Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016043

Physical Location & Seq

Genomic Coordinates Reverse (-)

58178110 .. 58180158

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTGTGGCTCAGGTCTCTGCTTCTCTCTCGGTTTCCATCAGAGATGCAAGTGCAATTAGCTCAGCGAGTCCTGTTCGGCTTCCTGTCTTGAATTTCGGTAGAACTGGGACGGCCTTTGCTACTGGTTCTCCTCTTATCATTAGGACATGTCATCAAAGGAAGGAGACTGGAAGATCAATTGCACTTTCTGTAAGGAGTGAGCAAAGCACCAAGGAGGGCGGTTTGGATGTATGGCTTGGCCGGCTTGGGATGGTTGGCTTTACTGCGGCTATTGGTGTCGAGATAGCAACAGGGAAGGGACTTCTAGAGAACTTTGGGCTCACAAGTCCCCTACCCACCGCTGCTCTGGCTGTTACAGCATTGGTGGGAGTTTTAACAGCAGTTTTCATTTTCCAGTCTGGCTCAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

139

Amino Acids

14.13

Weight (kDa)

9.76

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34190
fragaria_vesca	FvH4_2g05321
malus_domestica	MD05G1088100.v1.1
prunus_persica	Prupe.8G134100_v2.0.a1
pyrus_communis	pycom05g08750 pycom10g08230
rosa_chinensis	RchiOBHm_Chr6g0255531
rosa_laevigata	RLG00000014833
rosa_multiflora	Rmu_sc0006202.1_g000006
rosa_roxburghii	Rroxscaffold_7G00209910
rosa_rugosa	Rorug05G0559200
rosa_samantha	Rh6AG077700 Rh6CG068600 Rh6DG065400
rosa_wichuraiana	Rw6G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	222, 269, 342
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	22, 161
AoxI	GGCC	2 cut(s)	114, 241
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	47, 247
BceAI	ACGGC	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	22, 161
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	270, 345
BlpI	GCTNAGC	1 cut(s)	64
BlsI	GCNGC	2 cut(s)	271, 346
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	37
BmuI	ACTGGG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	4 cut(s)	112, 130, 175, 397
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	235, 258
BseMII	CTCAG	2 cut(s)	26, 78
BseNI	ACTGG	4 cut(s)	112, 130, 175, 397
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	2 cut(s)	116, 243
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	3 cut(s)	124, 315, 315
BsmAI	GTCTC	2 cut(s)	22, 161
BsmFI	GGGAC	3 cut(s)	124, 315, 315
BsnI	GGCC	2 cut(s)	116, 243
Bso31I	GGTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	176
Bsp1720I	GCTNAGC	1 cut(s)	64
BspACI	CCGC	3 cut(s)	222, 269, 342
BspANI	GGCC	2 cut(s)	116, 243
BspCNI	CTCAG	2 cut(s)	25, 77
BspTNI	GGTCTC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	4 cut(s)	112, 130, 175, 397
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	12, 64, 406
BstF5I	GGATG	2 cut(s)	235, 258
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	2 cut(s)	22, 161
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	244, 350, 359
BstNSI	RCATGY	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	116, 243
BtsCI	GGATG	2 cut(s)	235, 258
Cac8I	GCNNGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	243
CviAII	CATG	1 cut(s)	150
DdeI	CTNAG	3 cut(s)	12, 64, 406
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	153
FaiI	YATR	2 cut(s)	151, 235
FaqI	GGGAC	3 cut(s)	124, 315, 315
FatI	CATG	1 cut(s)	149
Fnu4HI	GCNGC	2 cut(s)	270, 345
FokI	GGATG	2 cut(s)	242, 265
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	2 cut(s)	270, 345
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	2 cut(s)	270, 345
HaeIII	GGCC	2 cut(s)	116, 243
HapII	CCGG	1 cut(s)	244
Hin1II	CATG	1 cut(s)	153
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	44, 409
Hpy188III	TCNNGA	3 cut(s)	91, 283, 308
HpyAV	CCTTC	2 cut(s)	157, 292
HpyCH4V	TGCA	3 cut(s)	50, 56, 185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	244, 350, 359
HpyF3I	CTNAG	3 cut(s)	12, 64, 406
Hsp92II	CATG	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	243
KroNI	GCCGGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	176
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	186
MfeI	CAATTG	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	4 cut(s)	57, 94, 180, 412
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	144, 211
MroNI	GCCGGC	1 cut(s)	243
MseI	TTAA	2 cut(s)	377, 415
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	244
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	244, 350, 359
NaeI	GCCGGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	176
NgoMIV	GCCGGC	1 cut(s)	243
NlaIII	CATG	1 cut(s)	153
NspI	RCATGY	1 cut(s)	153
PciI	ACATGT	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	271, 346
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PscI	ACATGT	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	377, 415
SatI	GCNGC	2 cut(s)	270, 345
Sau3AI	GATC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	2 cut(s)	18, 65
SfaNI	GCATC	1 cut(s)	37
Sse9I	AATT	4 cut(s)	57, 94, 180, 412
SsiI	CCGC	3 cut(s)	222, 269, 342
SspMI	CTAG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	282
TasI	AATT	4 cut(s)	57, 94, 180, 412
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	377, 415
Tru9I	TTAA	2 cut(s)	377, 415
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	379
XapI	RAATTY	1 cut(s)	94
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	1 cut(s)	153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.