Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0016043

Physical Location & Seq

Genomic Coordinates Reverse (-)

15519901 .. 15522455

Gene Structure 2555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G134100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTGTAGCTCAAATCTCTGCCTCTCTCTCCCTTTCCATCAGAGATGCAAGTGGTATTAGCTCAGCAGCAGCAAGTCCTGCTCGGCTTCCCCTTTTCAATTCCCCTAGAATTGGGACTGCCTTTGCTACTGGTTCTCCACTCATCATTAGAACTGTATATCATCAAAGGAAGGCAGTATGCAAATCAATGCCACTTTCTGTAAGGTGTGAGCAAAGCACGAAGGAAGGTGGTTTGGATGTATGGCTTGGCCGGCTTGCCATGGTTGGCTTTGCTGTGGCTATTAGTGTTGAGGTAGCGACGGGAAAGGGACTTCTGGAGAATTTTGGGCTCACAAGCCCCCTGCCTACAGCTGCCTTGGCCGTTACAGCATTGGTGGGGGTTTTAACAGCAGTCTTCATTTTCCAGTCTGGCTCCGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0016020 GO:0016168 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055035 GO:0055085 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

14.52

Weight (kDa)

9.78

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34190
fragaria_vesca	FvH4_2g05321
malus_domestica	MD05G1088100.v1.1
prunus_persica	Prupe.8G134100_v2.0.a1
pyrus_communis	pycom05g08750 pycom10g08230
rosa_chinensis	RchiOBHm_Chr6g0255531
rosa_laevigata	RLG00000014833
rosa_multiflora	Rmu_sc0006202.1_g000006
rosa_roxburghii	Rroxscaffold_7G00209910
rosa_rugosa	Rorug05G0559200
rosa_samantha	Rh6AG077700 Rh6CG068600 Rh6DG065400
rosa_wichuraiana	Rw6G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	250, 360
AcsI	RAATTY	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	100
AluBI	AGCT	3 cut(s)	11, 63, 353
AluI	AGCT	3 cut(s)	11, 63, 353
AoxI	GGCC	2 cut(s)	250, 360
ApeKI	GCWGC	3 cut(s)	68, 71, 353
ApoI	RAATTY	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	80, 83, 340
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	2 cut(s)	6, 348
BisI	GCNGC	3 cut(s)	69, 72, 354
BlpI	GCTNAGC	1 cut(s)	64
BlsI	GCNGC	3 cut(s)	70, 73, 355
BmiI	GGNNCC	1 cut(s)	415
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	388
BpmI	CTGGAG	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	261, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	136, 406
BseDI	CCNNGG	2 cut(s)	261, 357
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	136, 406
BseXI	GCAGC	3 cut(s)	80, 83, 340
BshFI	GGCC	2 cut(s)	252, 362
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	2 cut(s)	130, 324
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	130, 324
BsnI	GGCC	2 cut(s)	252, 362
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp1720I	GCTNAGC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	261
BspANI	GGCC	2 cut(s)	252, 362
BspCNI	CTCAG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	252
BsrI	ACTGG	2 cut(s)	136, 406
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	261, 357
BssT1I	CCWWGG	2 cut(s)	261, 357
Bst4CI	ACNGT	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	254, 258
BstDEI	CTNAG	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 253, 359, 368
BstSFI	CTRYAG	2 cut(s)	6, 348
BstV1I	GCAGC	3 cut(s)	80, 83, 340
BstV2I	GAAGAC	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	252, 362
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	254, 258
Cfr10I	RCCGGY	1 cut(s)	252
CviAII	CATG	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	250, 360
Eco130I	CCWWGG	2 cut(s)	261, 357
Eco24I	GRGCYC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	261, 357
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	2 cut(s)	261, 357
FaeI	CATG	1 cut(s)	265
FaiI	YATR	4 cut(s)	160, 181, 244, 263
FaqI	GGGAC	2 cut(s)	130, 324
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	69, 72, 354
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	3 cut(s)	69, 72, 354
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	3 cut(s)	69, 72, 354
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	252, 362
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	1 cut(s)	265
HpaII	CCGG	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	44, 418
Hpy188III	TCNNGA	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	166, 217, 221
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	50, 183
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 253, 359, 368
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	265
KroI	GCCGGC	1 cut(s)	252
KroNI	GCCGGC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	7 cut(s)	93, 117, 266, 302, 356, 396, 419
Lsp1109I	GCAGC	3 cut(s)	80, 83, 340
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	364
MboII	GAAGA	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	3 cut(s)	100, 111, 322
MnlI	CCTC	2 cut(s)	34, 286
MroNI	GCCGGC	1 cut(s)	252
MseI	TTAA	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	4 cut(s)	80, 253, 359, 368
NaeI	GCCGGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	261
NgoMIV	GCCGGC	1 cut(s)	252
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	1 cut(s)	415
NmeAIII	GCCGAG	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	254
PkrI	GCNGC	3 cut(s)	70, 73, 355
PspN4I	GGNNCC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	3 cut(s)	69, 72, 354
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	6 cut(s)	13, 65, 209, 232, 297, 355
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	2 cut(s)	6, 348
Sse9I	AATT	3 cut(s)	100, 111, 322
SspMI	CTAG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	261, 357
TaaI	ACNGT	1 cut(s)	157
TasI	AATT	3 cut(s)	100, 111, 322
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TseI	GCWGC	3 cut(s)	68, 71, 353
TspDTI	ATGAA	1 cut(s)	388
XapI	RAATTY	1 cut(s)	322
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.