Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0016043

Physical Location & Seq

Genomic Coordinates Reverse (-)

18828078 .. 18830224

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1088100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCTGTAGCTCAAATCTCCGCCTCGCTCTCCCTTTCAATCAGAGCTGCAAGTGGAATTAGCTCAGCAGCAGGTCCTGCTCGGCTTCCCCATTTTAATTCCGGTAGAATTGGGGCGACCTTTGCTTCTGGTTCTCCTCTCATTATTAAAAGAGCATACCAACAAAGGAATGCTGCATGTAAATCGATGCCAATTTCCATAAGGTGTGAGCAAAGCACCAAGGAGGGAGGTTTGGATGTATGGCTTGGCCGGCTCGCCATGATTGGCTTTGCTGTGGCTATTGGCGTTGAGGTATCAACCGGAAAGGGACTTCTGGAGAACTTTGGGCTTACAAGCCCCCTACCTACAGCTGCCTTGGGTGTTACAGCATTGGTGGGAGTTTTGACAGCAGTTTTCATCTTCCAATCCGGCTCAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0016020 GO:0016168 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055035 GO:0055085 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.29

Weight (kDa)

10.03

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34190
fragaria_vesca	FvH4_2g05321
malus_domestica	MD05G1088100.v1.1
prunus_persica	Prupe.8G134100_v2.0.a1
pyrus_communis	pycom05g08750 pycom10g08230
rosa_chinensis	RchiOBHm_Chr6g0255531
rosa_laevigata	RLG00000014833
rosa_multiflora	Rmu_sc0006202.1_g000006
rosa_roxburghii	Rroxscaffold_7G00209910
rosa_rugosa	Rorug05G0559200
rosa_samantha	Rh6AG077700 Rh6CG068600 Rh6DG065400
rosa_wichuraiana	Rw6G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	62
AciI	CCGC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	39
AluBI	AGCT	4 cut(s)	11, 47, 63, 350
AluI	AGCT	4 cut(s)	11, 47, 63, 350
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	4 cut(s)	47, 68, 173, 350
AspS9I	GGNCC	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	74
BbvI	GCAGC	4 cut(s)	34, 80, 160, 337
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BfmI	CTRYAG	2 cut(s)	6, 345
BfuAI	ACCTGC	1 cut(s)	62
BisI	GCNGC	4 cut(s)	48, 69, 174, 351
BlpI	GCTNAGC	1 cut(s)	64
BlsI	GCNGC	4 cut(s)	49, 70, 175, 352
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	335
Bpu1102I	GCTNAGC	1 cut(s)	64
Bsa29I	ATCGAT	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	219, 354
BsaWI	WCCGGW	2 cut(s)	101, 299
Bse118I	RCCGGY	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	219, 354
BseGI	GGATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	126
BseXI	GCAGC	4 cut(s)	34, 80, 160, 337
BshFI	GGCC	1 cut(s)	249
BshVI	ATCGAT	1 cut(s)	185
BsiSI	CCGG	4 cut(s)	102, 250, 300, 408
BslFI	GGGAC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	249
Bsp1720I	GCTNAGC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	77
BspDI	ATCGAT	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	219, 354
BssT1I	CCWWGG	2 cut(s)	219, 354
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	251, 255
BstDEI	CTNAG	2 cut(s)	64, 412
BstF5I	GGATG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 122, 250
BstNSI	RCATGY	1 cut(s)	180
BstSFI	CTRYAG	2 cut(s)	6, 345
BstV1I	GCAGC	4 cut(s)	34, 80, 160, 337
Bsu15I	ATCGAT	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	249
BsuTUI	ATCGAT	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	251, 255
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	74
ClaI	ATCGAT	1 cut(s)	185
CviAII	CATG	2 cut(s)	177, 259
DdeI	CTNAG	2 cut(s)	64, 412
EaeI	YGGCCR	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	10
Eco130I	CCWWGG	2 cut(s)	219, 354
Eco47I	GGWCC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	74
EcoT14I	CCWWGG	2 cut(s)	219, 354
ErhI	CCWWGG	2 cut(s)	219, 354
FaeI	CATG	2 cut(s)	180, 262
FaiI	YATR	5 cut(s)	157, 178, 200, 241, 260
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	2 cut(s)	176, 258
Fnu4HI	GCNGC	4 cut(s)	48, 69, 174, 351
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	4 cut(s)	48, 69, 174, 351
GluI	GCNGC	4 cut(s)	48, 69, 174, 351
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	4 cut(s)	102, 250, 300, 408
Hin1II	CATG	2 cut(s)	180, 262
HpaII	CCGG	4 cut(s)	102, 250, 300, 408
Hpy188I	TCNGA	2 cut(s)	44, 415
Hpy188III	TCNNGA	1 cut(s)	314
HpyCH4V	TGCA	2 cut(s)	50, 176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 122, 250
HpyF3I	CTNAG	2 cut(s)	64, 412
Hsp92II	CATG	2 cut(s)	180, 262
KroI	GCCGGC	1 cut(s)	249
KroNI	GCCGGC	1 cut(s)	251
LpnPI	CCDG	7 cut(s)	57, 90, 114, 115, 263, 299, 313
Lsp1109I	GCAGC	4 cut(s)	34, 80, 160, 337
LweI	GCATC	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	361
MboII	GAAGA	1 cut(s)	391
MluCI	AATT	4 cut(s)	57, 97, 108, 192
MnlI	CCTC	5 cut(s)	34, 147, 217, 221, 283
MroNI	GCCGGC	1 cut(s)	249
MseI	TTAA	2 cut(s)	96, 147
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	4 cut(s)	102, 250, 300, 408
Mva1269I	GAATGC	1 cut(s)	175
MwoI	GCNNNNNNNGC	3 cut(s)	77, 122, 250
NaeI	GCCGGC	1 cut(s)	251
NgoMIV	GCCGGC	1 cut(s)	249
NlaIII	CATG	2 cut(s)	180, 262
NmeAIII	GCCGAG	1 cut(s)	61
NspI	RCATGY	1 cut(s)	180
PctI	GAATGC	1 cut(s)	175
PdiI	GCCGGC	1 cut(s)	251
PkrI	GCNGC	4 cut(s)	49, 70, 175, 352
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	350
SaqAI	TTAA	2 cut(s)	96, 147
SatI	GCNGC	4 cut(s)	48, 69, 174, 351
Sau96I	GGNCC	1 cut(s)	74
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	2 cut(s)	6, 345
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	4 cut(s)	57, 97, 108, 192
SsiI	CCGC	1 cut(s)	21
StyI	CCWWGG	2 cut(s)	219, 354
TaqI	TCGA	1 cut(s)	185
TasI	AATT	4 cut(s)	57, 97, 108, 192
Tru1I	TTAA	2 cut(s)	96, 147
Tru9I	TTAA	2 cut(s)	96, 147
TseI	GCWGC	4 cut(s)	47, 68, 173, 350
TspDTI	ATGAA	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	74
XceI	RCATGY	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.