Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012528

Physical Location & Seq

Genomic Coordinates Reverse (-)

16569368 .. 16573955

Gene Structure 4588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCTAACTTGCTCCACACCAATCAATCTCACTTCTTCTTCCTCCATCATCCGCCAATCTACACCGTCAGTTCAAAGACGCAGGCTTTCCACTTCCCGCAATCAATGGCGCCGGTCAACCTCCGTACGAATCTCTCCGTGCGCAGGACCGTACGGTGTATGGCGAACCCGAGGAGAGTTAAGATGGTGGCTAAGCAGATAATGAGAGAACTCTCCGACATGCTTCTAACAGACACGGTTTTACAACACGCTGTCTTACCTGAAGCTGCACTTGGAGCTGACCGCTACCTCTCTTCTCTCACCACCATTAGCGATGTTGAAGTCTCTAATGATTTGCAGGTGGTTAAAGTATATGTATCCGTGTTTGGAGATGATAGAGGGAAAGACGTTGCAATTGCGGGGTTGAAATCGAAAGCTAAGTACGTTAGGAGTGAGCTTGGGAAGCGAATGAAGTTGAGATTGACGCCTGAGGTCAGGTTTATTGAGGATGAAGCCATGGAAAGAGGAAGCAGGGTAATTGCAATACTGGACAAAATAAAAGCTGAGAAAGGAAGCGGTGAAGGGAAAACAGAACCATCTGACTCAACAGAAGATGATCAAGATTGGGAAGTGGATGACCCCGACGAAGACATAATCTATGTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022613 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042254 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C RBFA

Protein Analysis

215

Amino Acids

24.29

Weight (kDa)

6.32

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RBFA	PF02033	59 - 175	3.9e-26	Ribosome-binding factor A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34730 AT4G34730 AT4G34730
fragaria_vesca	FvH4_2g10740 FvH4_2g10740
malus_domestica	MD00G1066800.v1.1
prunus_persica	Prupe.8G082300_v2.0.a1
pyrus_communis	pycom05g04460 pycom10g04740
rosa_chinensis	RchiOBHm_Chr6g0268531
rosa_laevigata	RLG00000013905
rosa_multiflora	Rmu_sc0012389.1_g000002
rosa_roxburghii	Rroxscaffold_7G00199750
rosa_rugosa	Rorug06G0042900
rosa_samantha	Rh6AG162300 Rh6BG166500 Rh6CG160300 Rh6DG151700
rosa_wichuraiana	Rw6G014010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
Acc16I	TGCGCA	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	109
AciI	CCGC	5 cut(s)	53, 98, 283, 398, 555
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	2 cut(s)	110, 464
AfaI	GTAC	3 cut(s)	127, 153, 422
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	3 cut(s)	75, 320, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AluBI	AGCT	5 cut(s)	266, 278, 416, 436, 542
AluI	AGCT	5 cut(s)	266, 278, 416, 436, 542
Alw26I	GTCTC	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	112, 144
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	292, 569
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	147
AxyI	CCTNAGG	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	633
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	54, 178, 583
BciVI	GTATCC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	267
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	192
BsaHI	GRCGYC	2 cut(s)	110, 464
BsaJI	CCNNGG	2 cut(s)	170, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	531
Bse21I	CCTNAGG	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	170, 495
BseGI	GGATG	3 cut(s)	49, 493, 619
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	459, 534
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	113
BsiWI	CGTACG	2 cut(s)	125, 151
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	595
Bsp1720I	GCTNAGC	1 cut(s)	192
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	5 cut(s)	53, 98, 283, 398, 555
BspCNI	CTCAG	2 cut(s)	460, 535
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	531
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	170, 495
BssMI	GATC	1 cut(s)	595
BssNI	GRCGYC	2 cut(s)	110, 464
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	4 cut(s)	67, 151, 156, 238
Bst6I	CTCTTC	1 cut(s)	298
BstACI	GRCGYC	2 cut(s)	110, 464
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	4 cut(s)	192, 417, 468, 543
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	49, 493, 619
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	112, 144
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 275, 442
BstNSI	RCATGY	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	633
Bsu36I	CCTNAGG	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	495
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	49, 493, 619
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	2 cut(s)	112, 144
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	147
CseI	GACGC	2 cut(s)	88, 472
Csp6I	GTAC	3 cut(s)	126, 152, 421
CviAII	CATG	2 cut(s)	220, 496
CviJI	RGCY	8 cut(s)	86, 191, 266, 278, 416, 436, 494, 542
CviKI_1	RGCY	8 cut(s)	86, 191, 266, 278, 416, 436, 494, 542
CviQI	GTAC	3 cut(s)	126, 152, 421
DdeI	CTNAG	4 cut(s)	192, 417, 468, 543
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	495
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	2 cut(s)	223, 499
FaiI	YATR	7 cut(s)	161, 221, 352, 354, 497, 632, 639
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	2 cut(s)	219, 495
FauI	CCCGC	2 cut(s)	105, 391
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	3 cut(s)	36, 500, 626
Fsp4HI	GCNGC	1 cut(s)	267
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	2 cut(s)	111, 143
GluI	GCNGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	113
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	2 cut(s)	88, 472
HhaI	GCGC	2 cut(s)	112, 144
Hin1I	GRCGYC	2 cut(s)	110, 464
Hin1II	CATG	2 cut(s)	223, 499
Hin6I	GCGC	2 cut(s)	110, 142
HinP1I	GCGC	2 cut(s)	110, 142
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	130, 581
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	292, 569
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	217, 580
Hpy188III	TCNNGA	1 cut(s)	599
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	4 cut(s)	67, 151, 156, 238
HpyCH4IV	ACGT	2 cut(s)	387, 423
HpyCH4V	TGCA	4 cut(s)	269, 337, 392, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 275, 442
HpyF3I	CTNAG	4 cut(s)	192, 417, 468, 543
HpySE526I	ACGT	2 cut(s)	387, 423
Hsp92I	GRCGYC	2 cut(s)	110, 464
Hsp92II	CATG	2 cut(s)	223, 499
HspAI	GCGC	2 cut(s)	110, 142
KasI	GGCGCC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	2 cut(s)	18, 275
LpnPI	CCDG	9 cut(s)	68, 126, 130, 273, 323, 460, 480, 496, 512
Lsp1109I	GCAGC	1 cut(s)	253
MaeII	ACGT	2 cut(s)	387, 423
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	5 cut(s)	28, 31, 285, 602, 638
MfeI	CAATTG	1 cut(s)	393
MluCI	AATT	2 cut(s)	393, 516
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	8 cut(s)	53, 131, 165, 299, 371, 463, 478, 497
MseI	TTAA	2 cut(s)	180, 345
MspI	CCGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	10, 275, 442
NarI	GGCGCC	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	2 cut(s)	223, 499
NlaIV	GGNNCC	1 cut(s)	111
NsbI	TGCGCA	1 cut(s)	143
NspI	RCATGY	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	130
Pfl23II	CGTACG	2 cut(s)	125, 151
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	575
PluTI	GGCGCC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	575
PspLI	CGTACG	2 cut(s)	125, 151
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	147
RsaI	GTAC	3 cut(s)	127, 153, 422
RsaNI	GTAC	3 cut(s)	126, 152, 421
SaqAI	TTAA	2 cut(s)	180, 345
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	575
SfoI	GGCGCC	1 cut(s)	111
SinI	GGWCC	1 cut(s)	147
Sse9I	AATT	2 cut(s)	393, 516
SsiI	CCGC	5 cut(s)	53, 98, 283, 398, 555
SspDI	GGCGCC	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	4 cut(s)	67, 151, 156, 238
TaiI	ACGT	2 cut(s)	390, 426
TaqI	TCGA	1 cut(s)	410
TasI	AATT	2 cut(s)	393, 516
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	180, 345
Tru9I	TTAA	2 cut(s)	180, 345
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	464, 504
TspGWI	ACGGA	3 cut(s)	113, 127, 349
VpaK11BI	GGWCC	1 cut(s)	147
XceI	RCATGY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.