Rh6CG160300

ribosome-binding factor A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012528
Physical Location & Seq
Reverse (-)
20791562 .. 20795753
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG160300.1

Sequence Viewer

Length: 552 bp
ATGCCATACTTGGTTCTCCACAGCCCACCACTCGCGTCCTTCCCTTGTCACCTTCCATCATCAAGGTTCCCAATTCAGACCCAGAAGCCAGCGGCCTGGATTCACCAAAGAAATCATCATGCGGCTCTGCTCCGCGGCATAAGGTGCATGGCGAAGCCGCGCAGAGTGGCAATGGTGGCTAAGCAGATACAGAGGGAGCTCTCTGACATGCTCTTAACAGATAAGGTGTTGCAATACGCTATTTTGCCTGAGGTTTCTTTGGGTGCCGACCGCTACCTCTCTTCTTTAACCACAATTAGTGATGTTGAGGTCTCTACCGACTTGCAGGTGGTTAAAGTATTTGTATCCGTTTTTGGCGATGAAAGAGGGAAGGAGGTTGCCCTTGCCGGGCTAAAGTCAAAAGCAAAGTACGTCCGTGGTGAATTGGGAAGGCGTATGAAACTGCGGTTGACTCCTGAGATACGCTTCATAGAAGATGAATCGTTAGAGAGAGGAAGCAGGGTAAAATTAATCATATATGCTTTACAAGTATCATTAGCTATACATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RBFA

Protein Analysis

183

Amino Acids

20.65

Weight (kDa)

9.9

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RBFA PF02033 55 - 169 1.6e-26 Ribosome-binding factor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34730 AT4G34730 AT4G34730
fragaria_vesca FvH4_2g10740 FvH4_2g10740
malus_domestica MD00G1066800.v1.1
prunus_persica Prupe.8G082300_v2.0.a1
pyrus_communis pycom05g04460 pycom10g04740
rosa_chinensis RchiOBHm_Chr6g0268531
rosa_laevigata RLG00000013905
rosa_multiflora Rmu_sc0012389.1_g000002
rosa_roxburghii Rroxscaffold_7G00199750
rosa_rugosa Rorug06G0042900
rosa_samantha Rh6AG162300 Rh6BG166500 Rh6CG160300 Rh6DG151700
rosa_wichuraiana Rw6G014010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 3 cut(s) 35, 135, 160
AciI CCGC 7 cut(s) 92, 122, 133, 135, 158, 271, 445
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 387
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 2 cut(s) 199, 539
AluI AGCT 2 cut(s) 199, 539
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 316
AoxI GGCC 1 cut(s) 93
AseI ATTAAT 1 cut(s) 509
AspLEI GCGC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 3 cut(s) 41, 95, 431
AxyI CCTNAGG 1 cut(s) 249
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 201
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 97
BciVI GTATCC 1 cut(s) 355
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 316
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 4 cut(s) 93, 123, 136, 158
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 4 cut(s) 94, 124, 137, 159
Bme1390I CCNGG 2 cut(s) 97, 388
BmiI GGNNCC 2 cut(s) 68, 265
BmrFI CCNGG 2 cut(s) 97, 388
Bpu1102I GCTNAGC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 388
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 133, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse21I CCTNAGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 133, 415
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 240, 447
Bsh1236I CGCG 3 cut(s) 35, 135, 160
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 316
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 201
Bsp1720I GCTNAGC 1 cut(s) 180
BspACI CCGC 7 cut(s) 92, 122, 133, 135, 158, 271, 445
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 241, 448
BspFNI CGCG 3 cut(s) 35, 135, 160
BspLI GGNNCC 2 cut(s) 68, 265
BspMI ACCTGC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 133, 415
Bst2UI CCWGG 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 286
BstAPI GCANNNNNTGC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 180, 249, 456
BstDSI CCRYGG 2 cut(s) 133, 415
BstFNI CGCG 3 cut(s) 35, 135, 160
BstHHI GCGC 1 cut(s) 162
BstMAI GTCTC 1 cut(s) 316
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 144, 176
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 95, 386
BstUI CGCG 3 cut(s) 35, 135, 160
BstXI CCANNNNNNTGG 1 cut(s) 96
Bsu36I CCTNAGG 1 cut(s) 249
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 2 cut(s) 133, 415
BtgZI GCGATG 1 cut(s) 372
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 162
Cfr42I CCGCGG 1 cut(s) 136
CseI GACGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 409
CviAII CATG 3 cut(s) 119, 148, 208
CviJI RGCY 9 cut(s) 24, 88, 95, 125, 157, 179, 199, 391, 539
CviKI_1 RGCY 9 cut(s) 24, 88, 95, 125, 157, 179, 199, 391, 539
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 180, 249, 456
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 3 cut(s) 122, 151, 211
FatI CATG 3 cut(s) 118, 147, 207
Fnu4HI GCNGC 4 cut(s) 93, 123, 136, 158
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 4 cut(s) 93, 123, 136, 158
GlaI GCGC 1 cut(s) 161
GluI GCNGC 4 cut(s) 93, 123, 136, 158
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 387
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 162
Hin1II CATG 3 cut(s) 122, 151, 211
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 3 cut(s) 100, 451, 479
HpaII CCGG 1 cut(s) 387
HphI GGTGA 3 cut(s) 41, 95, 431
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 2 cut(s) 78, 205
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 4 cut(s) 49, 62, 364, 423
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 3 cut(s) 147, 232, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 176
HpyF3I CTNAG 3 cut(s) 180, 249, 456
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 3 cut(s) 122, 151, 211
HspAI GCGC 1 cut(s) 160
KspI CCGCGG 1 cut(s) 136
LmnI GCTCC 2 cut(s) 135, 196
LpnPI CCDG 9 cut(s) 82, 95, 102, 109, 261, 311, 400, 468, 484
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 47
MboII GAAGA 2 cut(s) 273, 485
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 72, 294, 422, 506
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 7 cut(s) 186, 244, 287, 301, 359, 367, 485
MseI TTAA 4 cut(s) 215, 287, 333, 509
MspA1I CMGCKG 2 cut(s) 92, 135
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 2 cut(s) 97, 388
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 3 cut(s) 35, 135, 160
MwoI GCNNNNNNNGC 2 cut(s) 144, 176
NciI CCSGG 1 cut(s) 388
NlaIII CATG 3 cut(s) 122, 151, 211
NlaIV GGNNCC 2 cut(s) 68, 265
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 211
PaqCI CACCTGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 100, 479
PkrI GCNGC 4 cut(s) 94, 124, 137, 159
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 509
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 68, 265
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
SacI GAGCTC 1 cut(s) 201
SacII CCGCGG 1 cut(s) 136
SaqAI TTAA 4 cut(s) 215, 287, 333, 509
SatI GCNGC 4 cut(s) 93, 123, 136, 158
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 2 cut(s) 97, 388
SduI GDGCHC 1 cut(s) 201
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
Sse9I AATT 4 cut(s) 72, 294, 422, 506
SsiI CCGC 7 cut(s) 92, 122, 133, 135, 158, 271, 445
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 95, 386
TaiI ACGT 1 cut(s) 414
TasI AATT 4 cut(s) 72, 294, 422, 506
TauI GCSGC 4 cut(s) 95, 125, 138, 160
TfiI GAWTC 2 cut(s) 100, 479
Tru1I TTAA 4 cut(s) 215, 287, 333, 509
Tru9I TTAA 4 cut(s) 215, 287, 333, 509
TseFI GTSAC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 4 cut(s) 375, 452, 457, 492
TspGWI ACGGA 2 cut(s) 337, 404
VspI ATTAAT 1 cut(s) 509
XceI RCATGY 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.