Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004675

Physical Location & Seq

Genomic Coordinates Reverse (-)

16574544 .. 16576753

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGGCGGCCACCTCTAGCATCTCTTCTTCTCTATCTCTCAATGCTAAACCCAACAAGCTCTCTAACAACAACAACAACAATAAGCCTCACCGTTTCCTCCGTAATCCCTTCCTTAACCCCTCCTCCTCCTCTTTCTCTCCTCTTCCGGCTTCTATCTCCTCTTCTTCTTCTTCTCCTTCGTTTCCGCTCAGAGTTTCAAACCCTCTTACCCTGTTGGCGGCAGACAACGATGATTATGACGAGAAGCCTCGGGAAGAGTGTGGAGTTGTCGGAATCTACGGTGACTCAGAAGCTTCACGACTCTGTTACTTAGCTCTCCATGCGCTTCAGCATCGAGGTCAAGAAGGTGCAGGTATTGTTACCGTTAGTAAAGATAAGGTTCTTCAGACCATTACAGGTGTTGGTTTGGTCTCTGAGGTTTTCAGTGAATCCAAACTCGATCAATTACCAGGAGACATAGCCATTGGTCATGTCAGGTACTCGACTGCTGGTTCTTCTATGCTCAAGAACGTTCAGCCGTTTGTTGCTGGTTATCGATTTGGCTCTGTTGGTGTTGCTCACAATGGCAATTTAGTGAATTACACGAAATTGAGAGCTGATTTAGAGGAAAATGGTTCGATTTTCAATACTAGCTCTGATACTGAGGTTGTGCTTCATTTGATTGCCATTTCTAAAGCTAGACCCTTTTTCATGAGAATTGTTGATGCTTGTGAGAAGCTTCAAGGTGCTTATTCGATGGTGTTTGTGACTGAGGATAAGCTTGTTGCTGTTCGTGACCCACATGGGTTTAGGCCTTTAGTTATGGGTAGGAGAAGTAATGGAGCTGTTGTGTTTGCTTCTGAGACTTGTGCTCTTGATTTGATTGAAGCTACTTATGAGAGAGAGGTTTATCCTGGTGAGGTTTTAGTTGTGGATAAAGATGGTGTCAAATGTCAGTGTTTGATGCCTCATCCTGAGCCAAAGCAATGCATTTTCGAACATATTTACTTCTCGTTGCCTAATTCGATTGTCTTTGGTCGGTCTGTGTATGAGTCTAGGCATGTCTTTGGTGAGATTTTAGCTACTGAGTCACCTGTTGATTGTGATGTGGTGATCGCTGTGCCTGACTCGGGTGTTGTGGCTGCTCTTGGTTACGCGGCTAAAGCTGGTGTAGCGTTTCAGCAAGGTTTGATTAGGTCTCATTATGTTGGAAGGACTTTCATTGAGCCGTCTCAGAAAATCAGAGATTTTGGAGTGAAGCTGAAGCTATCGCCAGTCCGAGGAGTTTTAGAAGGGAAAAGAGTTGTTGTTGTTGATGATTCGATTGTTAGAGGAACAACTTCGTCCAAGATTGTGCGTTTATTGAGAGAAGCGGGTGCGAAAGAGGTTCACATGAGGATCGCGAGTCCTCCTATTATTGCATCTTGTTACTACGGAGTGGACACGCCTAGCTCAAATGAGTTGATATCGAATAGGATGAGTGTTGATGAAATCAGGGATTACATCGGATGTGATTCCCTTGCGTTTTTGTCGTTTGAGACGTTAAAGAAACATTTGGGGGAAGATTCTAGAAGCTTCTGCTATGCATGCTTCACGGGGGACTATCCGGTGAAGCCTACAGAGGATAAGGTGAAGCGAGGAGGAGATTTTATCGATGATGGTCTCGTTGGAGGAATCCACAACATTGAAGGAGGTTGGGTACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004044 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009113 GO:0009117 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019637 GO:0030312 GO:0034641 GO:0034654 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046112 GO:0046148 GO:0046483 GO:0055086 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 ko01110 ko01130 map00230 map00250 map01100 map01110 map01130

Pfam Domains

Protein Families

GATase_7 Pribosyltran

Protein Analysis

561

Amino Acids

61.03

Weight (kDa)

6.3

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	150 - 281	7.8e-21	Glutamine amidotransferase domain
GATase_7	PF13537	168 - 285	1.3e-22	Glutamine amidotransferase domain
Pribosyltran	PF00156	361 - 457	1.9e-08	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16570 AT4G34740 AT4G38880
fragaria_vesca	FvH4_1g25950 FvH4_7g05510
malus_domestica	MD00G1066600.v1.1 MD10G1061900.v1.1
prunus_persica	Prupe.8G082700_v2.0.a1
pyrus_communis	pycom05g04470 pycom10g04760
rosa_chinensis	RchiOBHm_Chr6g0268481 RchiOBHm_Chr6g0268491
rosa_laevigata	RLG00000013908 RLG00000013909
rosa_multiflora	Rmu_co8446293.1_g000001 Rmu_sc0002404.1_g000018 Rmu_sc0002404.1_g000024 Rmu_sc0008184.1_g000006
rosa_roxburghii	Rroxscaffold_7G00199790 Rroxscaffold_7G00199800
rosa_rugosa	Rorug06G0042200 Rorug06G0042300
rosa_samantha	Rh6AG161600 Rh6AG161900 Rh6BG165900 Rh6CG159500 Rh6CG159700 Rh6DG151500 Rh6DG151600
rosa_wichuraiana	Rw6G013970 Rw6G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	341
AccBSI	CCGCTC	1 cut(s)	187
AccII	CGCG	2 cut(s)	1136, 1382
AciI	CCGC	5 cut(s)	5, 185, 218, 1136, 1352
AclI	AACGTT	1 cut(s)	510
AclWI	GGATC	1 cut(s)	1385
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	3 cut(s)	311, 368, 1262
AfaI	GTAC	2 cut(s)	479, 1680
AfiI	CCNNNNNNNGG	3 cut(s)	217, 1109, 1259
AgsI	TTSAA	5 cut(s)	198, 625, 722, 866, 1667
AjnI	CCWGG	2 cut(s)	448, 892
Alw21I	GWGCWC	1 cut(s)	853
Alw26I	GTCTC	7 cut(s)	415, 447, 836, 1182, 1215, 1511, 1646
AlwI	GGATC	1 cut(s)	1385
Ama87I	CYCGRG	2 cut(s)	249, 1108
AoxI	GGCC	2 cut(s)	6, 791
ApeKI	GCWGC	1 cut(s)	1121
Asp700I	GAANNNNTTC	1 cut(s)	1318
AspLEI	GCGC	1 cut(s)	325
AsuHPI	GGTGA	8 cut(s)	80, 293, 908, 1061, 1062, 1102, 1600, 1621
AsuII	TTCGAA	1 cut(s)	975
AvaI	CYCGRG	2 cut(s)	249, 1108
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
Bbv12I	GWGCWC	1 cut(s)	853
BbvI	GCAGC	1 cut(s)	1108
BccI	CCATC	3 cut(s)	730, 914, 1631
BceAI	ACGGC	2 cut(s)	502, 1192
BciT130I	CCWGG	2 cut(s)	450, 894
BcoDI	GTCTC	7 cut(s)	415, 447, 836, 1182, 1215, 1511, 1646
BfaI	CTAG	6 cut(s)	15, 630, 678, 1035, 1428, 1548
BfmI	CTRYAG	1 cut(s)	1596
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	4 cut(s)	6, 219, 1122, 1137
BlsI	GCNGC	4 cut(s)	7, 220, 1123, 1138
Bme1390I	CCNGG	2 cut(s)	450, 894
BmeT110I	CYCGRG	2 cut(s)	249, 1108
BmrFI	CCNGG	2 cut(s)	450, 894
BmsI	GCATC	5 cut(s)	27, 340, 694, 933, 1409
Bpu10I	CCTNAGC	1 cut(s)	954
Bpu14I	TTCGAA	1 cut(s)	975
BpuEI	CTTGAG	1 cut(s)	488
Bsa29I	ATCGAT	2 cut(s)	535, 1632
BsaI	GGTCTC	3 cut(s)	415, 1182, 1646
BsaJI	CCNNGG	2 cut(s)	248, 1258
BsaWI	WCCGGW	1 cut(s)	1585
BsaXI	ACNNNNNCTCC	5 cut(s)	107, 137, 813, 843, 1662
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 1109, 1259
Bse1I	ACTGG	1 cut(s)	1253
Bse3DI	GCAATG	1 cut(s)	971
BseBI	CCWGG	2 cut(s)	450, 894
BseCI	ATCGAT	2 cut(s)	535, 1632
BseDI	CCNNGG	2 cut(s)	248, 1258
BseGI	GGATG	3 cut(s)	949, 1461, 1493
BseLI	CCNNNNNNNGG	3 cut(s)	217, 1109, 1259
BseMI	GCAATG	1 cut(s)	971
BseMII	CTCAG	9 cut(s)	202, 300, 405, 633, 741, 831, 945, 1056, 1226
BseNI	ACTGG	1 cut(s)	1253
BseRI	GAGGAG	8 cut(s)	112, 115, 118, 129, 148, 1275, 1632, 1635
BseXI	GCAGC	1 cut(s)	1108
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	2 cut(s)	1136, 1382
BshFI	GGCC	2 cut(s)	8, 793
BshVI	ATCGAT	2 cut(s)	535, 1632
BsiHKAI	GWGCWC	1 cut(s)	853
BsiHKCI	CYCGRG	2 cut(s)	249, 1108
BsiSI	CCGG	2 cut(s)	146, 1586
BslFI	GGGAC	1 cut(s)	1592
BslI	CCNNNNNNNGG	3 cut(s)	217, 1109, 1259
BsmAI	GTCTC	7 cut(s)	415, 447, 836, 1182, 1215, 1511, 1646
BsmBI	CGTCTC	2 cut(s)	1215, 1511
BsmFI	GGGAC	1 cut(s)	1592
BsnI	GGCC	2 cut(s)	8, 793
Bso31I	GGTCTC	3 cut(s)	415, 1182, 1646
BsoBI	CYCGRG	2 cut(s)	249, 1108
Bsp119I	TTCGAA	1 cut(s)	975
Bsp1286I	GDGCHC	1 cut(s)	853
Bsp143I	GATC	3 cut(s)	439, 1092, 1377
Bsp68I	TCGCGA	1 cut(s)	1382
BspACI	CCGC	5 cut(s)	5, 185, 218, 1136, 1352
BspANI	GGCC	2 cut(s)	8, 793
BspCNI	CTCAG	9 cut(s)	201, 299, 406, 634, 742, 832, 946, 1057, 1225
BspDI	ATCGAT	2 cut(s)	535, 1632
BspFNI	CGCG	2 cut(s)	1136, 1382
BspHI	TCATGA	1 cut(s)	690
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	1385
BspT104I	TTCGAA	1 cut(s)	975
BspTNI	GGTCTC	3 cut(s)	415, 1182, 1646
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	971
BsrI	ACTGG	1 cut(s)	1253
BssECI	CCNNGG	2 cut(s)	248, 1258
BssMI	GATC	3 cut(s)	439, 1092, 1377
Bst2UI	CCWGG	2 cut(s)	450, 894
Bst4CI	ACNGT	4 cut(s)	92, 281, 364, 1683
Bst6I	CTCTTC	4 cut(s)	28, 147, 166, 249
BstBI	TTCGAA	1 cut(s)	975
BstC8I	GCNNGC	1 cut(s)	1567
BstF5I	GGATG	3 cut(s)	949, 1461, 1493
BstFNI	CGCG	2 cut(s)	1136, 1382
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	3 cut(s)	442, 1095, 1380
BstMAI	GTCTC	7 cut(s)	415, 447, 836, 1182, 1215, 1511, 1646
BstMBI	GATC	3 cut(s)	439, 1092, 1377
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 1142, 1151, 1566
BstNI	CCWGG	2 cut(s)	450, 894
BstNSI	RCATGY	2 cut(s)	1043, 1569
BstSCI	CCNGG	2 cut(s)	448, 892
BstSFI	CTRYAG	1 cut(s)	1596
BstUI	CGCG	2 cut(s)	1136, 1382
BstV1I	GCAGC	1 cut(s)	1108
Bsu15I	ATCGAT	2 cut(s)	535, 1632
BsuRI	GGCC	2 cut(s)	8, 793
BsuTUI	ATCGAT	2 cut(s)	535, 1632
BtsCI	GGATG	3 cut(s)	949, 1461, 1493
BtsIMutI	CAGTG	2 cut(s)	430, 941
BtuMI	TCGCGA	1 cut(s)	1382
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	1567
CciI	TCATGA	1 cut(s)	690
CfoI	GCGC	1 cut(s)	325
ClaI	ATCGAT	2 cut(s)	535, 1632
Csp6I	GTAC	2 cut(s)	478, 1679
CviAII	CATG	7 cut(s)	320, 470, 691, 782, 1040, 1372, 1566
CviQI	GTAC	2 cut(s)	478, 1679
DpnI	GATC	3 cut(s)	441, 1094, 1379
DpnII	GATC	3 cut(s)	439, 1092, 1377
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	4 cut(s)	28, 147, 166, 249
EarI	CTCTTC	4 cut(s)	28, 147, 166, 249
Eco147I	AGGCCT	1 cut(s)	793
Eco31I	GGTCTC	3 cut(s)	415, 1182, 1646
Eco32I	GATATC	1 cut(s)	1446
Eco57I	CTGAAG	3 cut(s)	311, 368, 1262
Eco88I	CYCGRG	2 cut(s)	249, 1108
EcoRII	CCWGG	2 cut(s)	448, 892
EcoRV	GATATC	1 cut(s)	1446
EcoT22I	ATGCAT	2 cut(s)	971, 1567
Esp3I	CGTCTC	2 cut(s)	1215, 1511
FaeI	CATG	7 cut(s)	323, 473, 694, 785, 1043, 1375, 1569
FaqI	GGGAC	1 cut(s)	1592
FatI	CATG	7 cut(s)	319, 469, 690, 781, 1039, 1371, 1565
FauI	CCCGC	1 cut(s)	1345
Fnu4HI	GCNGC	4 cut(s)	6, 219, 1122, 1137
FokI	GGATG	3 cut(s)	936, 1468, 1500
Fsp4HI	GCNGC	4 cut(s)	6, 219, 1122, 1137
FspBI	CTAG	6 cut(s)	15, 630, 678, 1035, 1428, 1548
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	4 cut(s)	6, 219, 1122, 1137
HaeIII	GGCC	2 cut(s)	8, 793
HapII	CCGG	2 cut(s)	146, 1586
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	7 cut(s)	323, 473, 694, 785, 1043, 1375, 1569
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	4 cut(s)	291, 716, 758, 1552
HpaII	CCGG	2 cut(s)	146, 1586
HphI	GGTGA	8 cut(s)	80, 293, 908, 1061, 1062, 1102, 1600, 1621
Hpy166II	GTNNAC	2 cut(s)	1369, 1420
Hpy8I	GTNNAC	2 cut(s)	1369, 1420
HpyAV	CCTTC	6 cut(s)	118, 186, 338, 1185, 1265, 1661
HpyCH4III	ACNGT	4 cut(s)	92, 281, 364, 1683
HpyCH4IV	ACGT	2 cut(s)	510, 1520
HpyCH4V	TGCA	4 cut(s)	350, 969, 1400, 1565
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 1142, 1151, 1566
HpySE526I	ACGT	2 cut(s)	510, 1520
Hsp92II	CATG	7 cut(s)	323, 473, 694, 785, 1043, 1375, 1569
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	439, 1092, 1377
LmnI	GCTCC	1 cut(s)	821
Lsp1109I	GCAGC	1 cut(s)	1108
LweI	GCATC	5 cut(s)	27, 340, 694, 933, 1409
MaeI	CTAG	6 cut(s)	15, 630, 678, 1035, 1428, 1548
MaeII	ACGT	2 cut(s)	510, 1520
MaeIII	GTNAC	8 cut(s)	281, 305, 358, 745, 773, 1068, 1130, 1406
MalI	GATC	3 cut(s)	441, 1094, 1379
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	3 cut(s)	439, 1092, 1377
MhlI	GDGCHC	1 cut(s)	853
MluCI	AATT	6 cut(s)	443, 568, 577, 587, 696, 1000
MlyI	GAGTC	6 cut(s)	278, 294, 1040, 1076, 1100, 1393
MmeI	TCCRAC	3 cut(s)	250, 1168, 1627
Mph1103I	ATGCAT	2 cut(s)	971, 1567
MroXI	GAANNNNTTC	1 cut(s)	1318
MseI	TTAA	2 cut(s)	114, 1523
MspI	CCGG	2 cut(s)	146, 1586
MspR9I	CCNGG	2 cut(s)	450, 894
MvaI	CCWGG	2 cut(s)	450, 894
MvnI	CGCG	2 cut(s)	1136, 1382
MwoI	GCNNNNNNNGC	4 cut(s)	320, 1142, 1151, 1566
NdeII	GATC	3 cut(s)	439, 1092, 1377
NlaIII	CATG	7 cut(s)	323, 473, 694, 785, 1043, 1375, 1569
NmuCI	GTSAC	4 cut(s)	281, 745, 773, 1068
NruI	TCGCGA	1 cut(s)	1382
NsiI	ATGCAT	2 cut(s)	971, 1567
NspI	RCATGY	2 cut(s)	1043, 1569
NspV	TTCGAA	1 cut(s)	975
PaeI	GCATGC	1 cut(s)	1569
PagI	TCATGA	1 cut(s)	690
PceI	AGGCCT	1 cut(s)	793
PcsI	WCGNNNNNNNCGW	1 cut(s)	1517
PdmI	GAANNNNTTC	1 cut(s)	1318
PfeI	GAWTC	6 cut(s)	273, 428, 1298, 1493, 1544, 1653
PkrI	GCNGC	4 cut(s)	7, 220, 1123, 1138
PleI	GAGTC	6 cut(s)	278, 294, 1039, 1075, 1100, 1392
PpsI	GAGTC	6 cut(s)	278, 294, 1039, 1075, 1100, 1392
Psp1406I	AACGTT	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	448, 892
PspGI	CCWGG	2 cut(s)	448, 892
RruI	TCGCGA	1 cut(s)	1382
RsaI	GTAC	2 cut(s)	479, 1680
RsaNI	GTAC	2 cut(s)	478, 1679
SaqAI	TTAA	2 cut(s)	114, 1523
SatI	GCNGC	4 cut(s)	6, 219, 1122, 1137
Sau3AI	GATC	3 cut(s)	439, 1092, 1377
SchI	GAGTC	6 cut(s)	278, 294, 1040, 1076, 1100, 1393
ScrFI	CCNGG	2 cut(s)	450, 894
SduI	GDGCHC	1 cut(s)	853
SfaNI	GCATC	5 cut(s)	27, 340, 694, 933, 1409
SfcI	CTRYAG	1 cut(s)	1596
SfuI	TTCGAA	1 cut(s)	975
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SphI	GCATGC	1 cut(s)	1569
Sse9I	AATT	6 cut(s)	443, 568, 577, 587, 696, 1000
SseBI	AGGCCT	1 cut(s)	793
SsiI	CCGC	5 cut(s)	5, 185, 218, 1136, 1352
SspMI	CTAG	6 cut(s)	15, 630, 678, 1035, 1428, 1548
StuI	AGGCCT	1 cut(s)	793
StyD4I	CCNGG	2 cut(s)	448, 892
TaaI	ACNGT	4 cut(s)	92, 281, 364, 1683
TaiI	ACGT	2 cut(s)	513, 1523
TaqII	GACCGA	1 cut(s)	1008
TasI	AATT	6 cut(s)	443, 568, 577, 587, 696, 1000
TauI	GCSGC	3 cut(s)	8, 221, 1139
TfiI	GAWTC	6 cut(s)	273, 428, 1298, 1493, 1544, 1653
Tru1I	TTAA	2 cut(s)	114, 1523
Tru9I	TTAA	2 cut(s)	114, 1523
TscAI	CASTG	2 cut(s)	430, 941
TseFI	GTSAC	4 cut(s)	281, 745, 773, 1068
TseI	GCWGC	1 cut(s)	1121
Tsp45I	GTSAC	4 cut(s)	281, 745, 773, 1068
TspDTI	ATGAA	4 cut(s)	644, 679, 1189, 1482
TspGWI	ACGGA	2 cut(s)	89, 1428
TspRI	CASTG	2 cut(s)	430, 941
XbaI	TCTAGA	1 cut(s)	1547
XceI	RCATGY	2 cut(s)	1043, 1569
XmnI	GAANNNNTTC	1 cut(s)	1318
XspI	CTAG	6 cut(s)	15, 630, 678, 1035, 1428, 1548
Zsp2I	ATGCAT	2 cut(s)	971, 1567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.