Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8446293.1

Orthogroup ID

OG0004675

Physical Location & Seq

Genomic Coordinates Reverse (-)

355 .. 1596

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8446293.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atgcttaagaatgtgcagccttttgttgcagggtataggtttgggtctgttggggttgcccacaatggtaatttggtaaattatggcgccctaagagctatgcttgaagagaatgggtctatttttaataccagctctgatacagaggtggttcttcacctcattgcaatttcaaaggctaggccttttcttttgaggattgttgatgcgtgtgagcagcttcggggtgcttattcgatggtgtttgtgacccaagataagcttgttgcggttcgggacccatacgggtttcggcctttggttatggggaggaggagcaatggttctgttgttttcgcctctgagacgtgtgcgcttgatttgattgaggctacatatgagagggaggtgtttccgggagaggttgtggtggtggacaaagacggggttcagtctctctgccttatgtctcatcctgaaccaaaacaatgtatatttgagcacatatacttttctctgccgaattctgttgttttcgggcgttctgtgtacgaatctcgtcgtgtgtttggtgagattcttgccactgaggccccagttgagtgtgatgttgtgatagcagtgcctgattctggtgtggtggctgcgcttggttatgctgccaaagctggtgtgccttttcagcagggtttgattaggtctcactatgtgggaaggaccttcattgagccatcgcagaagattagggactttggcgtgaagcttaagctctctccggtcagggctgtgttggagggtaagagggttgtggtcgtggatgactcaattgtgaggggaactacgtcttcgaagattgttaggttgttgaaggaggcaggtgctaaggaagttcacatgaggattgcaagcccgcctattataggctcctgttattatggtgtggacaccccaagttctgaggagttgatttcaaataggatgaaagttgaggagattagggagttcatcggatgtgattcacttgcttttctgccatttgatagcttgcaggggatgttgggaacacaagctcccaacttttgttatgcttgctttaccggaaattaccctgtggaacctagagaggataaagtgaaacgggttggtgattttatggatgatggcatgactggtaattttgattccattgatggtgcttggattccagcaaatcggattcacaaacaggagagggataaggaatttgaggggagtgttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004044 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009113 GO:0009117 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019637 GO:0030312 GO:0034641 GO:0034654 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046112 GO:0046148 GO:0046483 GO:0055086 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 ko01110 ko01130 map00230 map00250 map01100 map01110 map01130

Pfam Domains

Protein Families

GATase_7 Pribosyltran

Protein Analysis

413

Amino Acids

45.51

Weight (kDa)

5.77

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16570 AT4G34740 AT4G38880
fragaria_vesca	FvH4_1g25950 FvH4_7g05510
malus_domestica	MD00G1066600.v1.1 MD10G1061900.v1.1
prunus_persica	Prupe.8G082700_v2.0.a1
pyrus_communis	pycom05g04470 pycom10g04760
rosa_chinensis	RchiOBHm_Chr6g0268481 RchiOBHm_Chr6g0268491
rosa_laevigata	RLG00000013908 RLG00000013909
rosa_multiflora	Rmu_co8446293.1_g000001 Rmu_sc0002404.1_g000018 Rmu_sc0002404.1_g000024 Rmu_sc0008184.1_g000006
rosa_roxburghii	Rroxscaffold_7G00199790 Rroxscaffold_7G00199800
rosa_rugosa	Rorug06G0042200 Rorug06G0042300
rosa_samantha	Rh6AG161600 Rh6AG161900 Rh6BG165900 Rh6CG159500 Rh6CG159700 Rh6DG151500 Rh6DG151600
rosa_wichuraiana	Rw6G013970 Rw6G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	845
Acc36I	ACCTGC	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	86
AciI	CCGC	2 cut(s)	269, 890
AcsI	RAATTY	2 cut(s)	502, 1220
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	688
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	611, 899
AflII	CTTAAG	2 cut(s)	5, 743
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	4 cut(s)	107, 174, 847, 951
AjiI	CACGTC	1 cut(s)	348
AloI	GAACNNNNNNTCC	4 cut(s)	307, 339, 1033, 1065
AluBI	AGCT	9 cut(s)	98, 135, 220, 262, 647, 742, 748, 1023, 1049
AluI	AGCT	9 cut(s)	98, 135, 220, 262, 647, 742, 748, 1023, 1049
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	4 cut(s)	338, 438, 453, 684
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	3 cut(s)	182, 293, 570
ApeKI	GCWGC	4 cut(s)	16, 217, 623, 638
ApoI	RAATTY	2 cut(s)	502, 1220
AspLEI	GCGC	3 cut(s)	89, 355, 628
AspS9I	GGNCC	3 cut(s)	277, 571, 696
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	3 cut(s)	149, 563, 1136
AsuII	TTCGAA	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	277, 696
BaeI	ACNNNNGTAYC	2 cut(s)	132, 165
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	816
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	4 cut(s)	28, 229, 610, 625
BccI	CCATC	4 cut(s)	232, 718, 1133, 1163
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	4 cut(s)	338, 438, 453, 684
BfaI	CTAG	2 cut(s)	180, 1098
BfoI	RGCGCY	1 cut(s)	90
BfrI	CTTAAG	2 cut(s)	5, 743
BfuAI	ACCTGC	1 cut(s)	845
BglI	GCCNNNNNGGC	1 cut(s)	569
BisI	GCNGC	4 cut(s)	17, 218, 624, 639
BlsI	GCNGC	4 cut(s)	18, 219, 625, 640
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	2 cut(s)	277, 696
BmgBI	CACGTC	1 cut(s)	348
BmgT120I	GGNCC	3 cut(s)	277, 571, 696
BmiI	GGNNCC	6 cut(s)	88, 278, 279, 573, 904, 1095
BmrFI	CCNGG	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	816
Bpu10I	CCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	684
BsaWI	WCCGGW	2 cut(s)	754, 1076
BsaXI	ACNNNNNCTCC	6 cut(s)	307, 337, 390, 420, 1033, 1063
Bsc4I	CCNNNNNNNGG	2 cut(s)	611, 899
Bse1I	ACTGG	2 cut(s)	575, 1153
Bse3DI	GCAATG	2 cut(s)	162, 325
BseGI	GGATG	6 cut(s)	451, 802, 963, 995, 1038, 1141
BseLI	CCNNNNNNNGG	2 cut(s)	611, 899
BseMI	GCAATG	2 cut(s)	162, 325
BseMII	CTCAG	3 cut(s)	333, 558, 927
BseNI	ACTGG	2 cut(s)	575, 1153
BseRI	GAGGAG	4 cut(s)	325, 328, 953, 983
BseXI	GCAGC	4 cut(s)	28, 229, 610, 625
BsgI	GTGCAG	1 cut(s)	35
BshFI	GGCC	3 cut(s)	184, 295, 572
BshNI	GGYRCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	3 cut(s)	395, 755, 1077
BslFI	GGGAC	2 cut(s)	290, 740
BslI	CCNNNNNNNGG	2 cut(s)	611, 899
BsmAI	GTCTC	4 cut(s)	338, 438, 453, 684
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	290, 740
BsnI	GGCC	3 cut(s)	184, 295, 572
Bso31I	GGTCTC	1 cut(s)	684
Bsp119I	TTCGAA	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	483
BspACI	CCGC	2 cut(s)	269, 890
BspANI	GGCC	3 cut(s)	184, 295, 572
BspCNI	CTCAG	3 cut(s)	334, 559, 928
BspLI	GGNNCC	6 cut(s)	88, 278, 279, 573, 904, 1095
BspMI	ACCTGC	1 cut(s)	845
BspT104I	TTCGAA	1 cut(s)	827
BspT107I	GGYRCC	1 cut(s)	86
BspTI	CTTAAG	2 cut(s)	5, 743
BspTNI	GGTCTC	1 cut(s)	684
BsrDI	GCAATG	2 cut(s)	162, 325
BsrI	ACTGG	2 cut(s)	575, 1153
BssNI	GRCGYC	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	2 cut(s)	5, 743
BstBI	TTCGAA	1 cut(s)	827
BstC8I	GCNNGC	4 cut(s)	886, 890, 1025, 1069
BstDEI	CTNAG	5 cut(s)	92, 342, 567, 861, 936
BstENI	CCTNNNNNAGG	1 cut(s)	897
BstF5I	GGATG	6 cut(s)	451, 802, 963, 995, 1038, 1141
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	3 cut(s)	89, 355, 628
BstMAI	GTCTC	4 cut(s)	338, 438, 453, 684
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 569, 644, 661
BstSCI	CCNGG	1 cut(s)	394
BstV1I	GCAGC	4 cut(s)	28, 229, 610, 625
BstV2I	GAAGAC	1 cut(s)	816
BsuRI	GGCC	3 cut(s)	184, 295, 572
BtgZI	GCGATG	1 cut(s)	696
BtrI	CACGTC	1 cut(s)	348
BtsCI	GGATG	6 cut(s)	451, 802, 963, 995, 1038, 1141
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	2 cut(s)	564, 606
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	4 cut(s)	886, 890, 1025, 1069
CaiI	CAGNNNCTG	1 cut(s)	605
CfoI	GCGC	3 cut(s)	89, 355, 628
Cfr13I	GGNCC	3 cut(s)	277, 571, 696
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	2 cut(s)	874, 1144
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	5 cut(s)	92, 342, 567, 861, 936
DinI	GGCGCC	1 cut(s)	88
DraIII	CACNNNGTG	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	684
Eco47I	GGWCC	2 cut(s)	277, 696
EcoNI	CCTNNNNNAGG	1 cut(s)	897
EcoO109I	RGGNCCY	3 cut(s)	277, 571, 696
EcoRI	GAATTC	1 cut(s)	502
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	2 cut(s)	877, 1147
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	2 cut(s)	290, 740
FatI	CATG	2 cut(s)	873, 1143
FauI	CCCGC	1 cut(s)	897
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	4 cut(s)	17, 218, 624, 639
FokI	GGATG	6 cut(s)	438, 809, 970, 1002, 1045, 1148
Fsp4HI	GCNGC	4 cut(s)	17, 218, 624, 639
FspBI	CTAG	2 cut(s)	180, 1098
GlaI	GCGC	3 cut(s)	88, 354, 627
GluI	GCNGC	4 cut(s)	17, 218, 624, 639
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	184, 295, 572
HapII	CCGG	3 cut(s)	395, 755, 1077
HhaI	GCGC	3 cut(s)	89, 355, 628
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	877, 1147
Hin6I	GCGC	3 cut(s)	87, 353, 626
HinP1I	GCGC	3 cut(s)	87, 353, 626
HindIII	AAGCTT	2 cut(s)	260, 740
HinfI	GANTC	8 cut(s)	533, 556, 608, 800, 995, 1160, 1180, 1195
HpaII	CCGG	3 cut(s)	395, 755, 1077
HphI	GGTGA	3 cut(s)	149, 563, 1136
Hpy166II	GTNNAC	4 cut(s)	415, 529, 871, 922
Hpy188I	TCNGA	5 cut(s)	139, 343, 937, 989, 1194
Hpy188III	TCNNGA	2 cut(s)	275, 455
Hpy8I	GTNNAC	4 cut(s)	415, 529, 871, 922
Hpy99I	CGWCG	1 cut(s)	543
HpyAV	CCTTC	3 cut(s)	687, 709, 841
HpyCH4IV	ACGT	2 cut(s)	347, 821
HpyCH4V	TGCA	5 cut(s)	16, 29, 167, 884, 1027
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 569, 644, 661
HpyF3I	CTNAG	5 cut(s)	92, 342, 567, 861, 936
HpySE526I	ACGT	2 cut(s)	347, 821
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	877, 1147
HspAI	GCGC	3 cut(s)	87, 353, 626
KasI	GGCGCC	1 cut(s)	86
KflI	GGGWCCC	1 cut(s)	277
LmnI	GCTCC	3 cut(s)	315, 908, 1054
Lsp1109I	GCAGC	4 cut(s)	28, 229, 610, 625
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	180, 1098
MaeII	ACGT	2 cut(s)	347, 821
MaeIII	GTNAC	1 cut(s)	247
MboII	GAAGA	5 cut(s)	119, 146, 730, 816, 841
MfeI	CAATTG	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	8 cut(s)	70, 79, 168, 502, 804, 1081, 1153, 1220
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	1 cut(s)	750
MseI	TTAA	3 cut(s)	6, 126, 744
MspCI	CTTAAG	2 cut(s)	5, 743
MspI	CCGG	3 cut(s)	395, 755, 1077
MspR9I	CCNGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	804
MwoI	GCNNNNNNNGC	4 cut(s)	95, 569, 644, 661
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	376
NlaIII	CATG	2 cut(s)	877, 1147
NlaIV	GGNNCC	6 cut(s)	88, 278, 279, 573, 904, 1095
NmuCI	GTSAC	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	827
PaqCI	CACCTGC	1 cut(s)	845
PceI	AGGCCT	1 cut(s)	184
PfeI	GAWTC	7 cut(s)	533, 556, 608, 995, 1160, 1180, 1195
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	18, 219, 625, 640
PleI	GAGTC	1 cut(s)	794
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	794
PpuMI	RGGWCCY	2 cut(s)	277, 696
Psp5II	RGGWCCY	2 cut(s)	277, 696
PspN4I	GGNNCC	6 cut(s)	88, 278, 279, 573, 904, 1095
PspPI	GGNCC	3 cut(s)	277, 571, 696
PspPPI	RGGWCCY	2 cut(s)	277, 696
PstNI	CAGNNNCTG	1 cut(s)	605
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SaqAI	TTAA	3 cut(s)	6, 126, 744
SatI	GCNGC	4 cut(s)	17, 218, 624, 639
Sau96I	GGNCC	3 cut(s)	277, 571, 696
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	1 cut(s)	196
SfoI	GGCGCC	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	827
SinI	GGWCC	2 cut(s)	277, 696
SmlI	CTYRAG	2 cut(s)	5, 743
SmoI	CTYRAG	2 cut(s)	5, 743
Sse9I	AATT	8 cut(s)	70, 79, 168, 502, 804, 1081, 1153, 1220
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	2 cut(s)	269, 890
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	180, 1098
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	394
TaiI	ACGT	2 cut(s)	350, 824
TaqI	TCGA	2 cut(s)	236, 827
TasI	AATT	8 cut(s)	70, 79, 168, 502, 804, 1081, 1153, 1220
TfiI	GAWTC	7 cut(s)	533, 556, 608, 995, 1160, 1180, 1195
Tru1I	TTAA	3 cut(s)	6, 126, 744
Tru9I	TTAA	3 cut(s)	6, 126, 744
TscAI	CASTG	2 cut(s)	571, 606
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	4 cut(s)	16, 217, 623, 638
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	691, 973, 974
TspRI	CASTG	2 cut(s)	571, 606
Vha464I	CTTAAG	2 cut(s)	5, 743
VpaK11BI	GGWCC	2 cut(s)	277, 696
XagI	CCTNNNNNAGG	1 cut(s)	897
XapI	RAATTY	2 cut(s)	502, 1220
XspI	CTAG	2 cut(s)	180, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.