Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004675

Physical Location & Seq

Genomic Coordinates Forward (+)

5378513 .. 5380096

Gene Structure 1584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAAACTGGTGAAAGAAATCTGTAGAGGATTTAATGGAGAAATCATTGAAATCCAAACCAAAGAAGTCTGGGTGATACAGCACAGCAGAACTGAAACAATGCCATCTAAAGTCTTGTACTCGTTGCTTCCATGTTTGACAAAGAAGGAAAAAGATGCCAATGGATCATATTTGCTTAATGGAAGCATCTTATTAGAAGATCTCATTGCCTCTAGTGATGGAAAATTAACTAATCCTATTCGCCACTACTCAGCTGATGAACTCATCAAGGCAACCAATAACTTTCATTCTTCTTGCCTTGTACTAGAGAATGCATTATACAATATATTCACCGGATTTTTAGACAACCGATTAGTTATCATTAAGAAGGAAGGGCGGAGGGATGACTCCTACTGCAATTTCGACCAAGCCAAGAATGAGGTCATTCGTGACATTATAATATCAATGCAGATGAGCAATCATAAGAATGTTTTGAAATTGTTGGGCTGCTGCTTAGAGTTCCCCATACCAGCTCTAGTGCTTGAACATGCAGGCAAAGGAGTTCTCAATGCTGTAGGAGGTTTGGGGGTTAATGACTCCTTAAACTGGAAAACTAGATTGCGTGTTGCAAAGCAGCTTGCTAATGCTATTACATATCTTCATACAGCCTTCCCCAGACCCATCATTCATAGGAACCTAAAACACAGCTGTATTTTTTTGGACGATGAGTTTGTTCCCAAAATCTCTGACTTCTCTGACTCCATAACCATTCCTCCTGAGCAATCACATGTTGAAGATCTTGTGAAAGGGACATTTGGGTACCTTGACCCTGCGTATAGGAAGTCTGGTTGCATTACAGAGCAGACTGATGTTTATAGCTTTGGTGTCATTTTACTTGTTTTCTTGACTGGACGAAATGCTTCAAAACAAAATCAAGCTGCAGAAAAGTGGGAGTCCCTTGTGTCATATGTAAAATTACATGCTTGTGATGACCAGTTTCAGATGATTGTTGATCCTAAAATACTCGAGGGTTTAGGAGGAGAAGATGAGCAAGCACAACGAAAGCAGTTGCTTGAGTTCCTATCACTGGCATTGTTATGCACTCAAGACAAAAGTGAAGCAAGGCCAGATATGATCGATGTGGCCAAGGAACTTGTACGAATTGAGAAGTCTACCTTTCCTCCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004044 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009113 GO:0009117 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019637 GO:0030312 GO:0034641 GO:0034654 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046112 GO:0046148 GO:0046483 GO:0055086 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 ko01110 ko01130 map00230 map00250 map01100 map01110 map01130

Pfam Domains

Protein Families

GATase_7 Pribosyltran

Protein Analysis

389

Amino Acids

43.83

Weight (kDa)

6.23

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	135 - 328	2.1e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	136 - 315	5.1e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16570 AT4G34740 AT4G38880
fragaria_vesca	FvH4_1g25950 FvH4_7g05510
malus_domestica	MD00G1066600.v1.1 MD10G1061900.v1.1
prunus_persica	Prupe.8G082700_v2.0.a1
pyrus_communis	pycom05g04470 pycom10g04760
rosa_chinensis	RchiOBHm_Chr6g0268481 RchiOBHm_Chr6g0268491
rosa_laevigata	RLG00000013908 RLG00000013909
rosa_multiflora	Rmu_co8446293.1_g000001 Rmu_sc0002404.1_g000018 Rmu_sc0002404.1_g000024 Rmu_sc0008184.1_g000006
rosa_roxburghii	Rroxscaffold_7G00199790 Rroxscaffold_7G00199800
rosa_rugosa	Rorug06G0042200 Rorug06G0042300
rosa_samantha	Rh6AG161600 Rh6AG161900 Rh6BG165900 Rh6CG159500 Rh6CG159700 Rh6DG151500 Rh6DG151600
rosa_wichuraiana	Rw6G013970 Rw6G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	798
AccB1I	GGYRCC	1 cut(s)	798
AccI	GTMKAC	1 cut(s)	1151
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	2 cut(s)	172, 986
AcoI	YGGCCR	1 cut(s)	1122
AfaI	GTAC	4 cut(s)	119, 303, 800, 1137
AfiI	CCNNNNNNNGG	2 cut(s)	585, 1066
AflIII	ACRYGT	1 cut(s)	766
AgsI	TTSAA	5 cut(s)	50, 475, 524, 773, 903
AluBI	AGCT	6 cut(s)	254, 512, 616, 687, 858, 917
AluI	AGCT	6 cut(s)	254, 512, 616, 687, 858, 917
AlwI	GGATC	2 cut(s)	172, 986
Ama87I	CYCGRG	1 cut(s)	1004
AoxI	GGCC	2 cut(s)	1103, 1122
ApeKI	GCWGC	4 cut(s)	486, 489, 613, 917
ArsI	GACNNNNNNTTYG	2 cut(s)	692, 724
Asp700I	GAANNNNTTC	1 cut(s)	898
Asp718I	GGTACC	1 cut(s)	798
AsuHPI	GGTGA	3 cut(s)	22, 85, 322
AvaI	CYCGRG	1 cut(s)	1004
BalI	TGGCCA	1 cut(s)	1124
BanI	GGYRCC	1 cut(s)	798
BbvI	GCAGC	4 cut(s)	473, 476, 625, 904
BccI	CCATC	3 cut(s)	112, 212, 668
BfaI	CTAG	5 cut(s)	213, 305, 515, 594, 1168
BfmI	CTRYAG	3 cut(s)	22, 552, 918
BglII	AGATCT	2 cut(s)	199, 775
BisI	GCNGC	4 cut(s)	487, 490, 614, 918
BlsI	GCNGC	4 cut(s)	488, 491, 615, 919
BmeT110I	CYCGRG	1 cut(s)	1004
BmiI	GGNNCC	2 cut(s)	674, 800
BmsI	GCATC	2 cut(s)	145, 195
Bpu10I	CCTNAGC	1 cut(s)	756
BpuEI	CTTGAG	2 cut(s)	1068, 1073
Bsa29I	ATCGAT	1 cut(s)	1116
BsaJI	CCNNGG	1 cut(s)	1125
BsaWI	WCCGGW	1 cut(s)	332
BsaXI	ACNNNNNCTCC	3 cut(s)	736, 766, 1144
Bsc4I	CCNNNNNNNGG	2 cut(s)	585, 1066
Bse1I	ACTGG	5 cut(s)	12, 590, 892, 973, 1071
Bse3DI	GCAATG	1 cut(s)	204
BseCI	ATCGAT	1 cut(s)	1116
BseDI	CCNNGG	1 cut(s)	1125
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	585, 1066
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	264, 747
BseNI	ACTGG	5 cut(s)	12, 590, 892, 973, 1071
BseRI	GAGGAG	2 cut(s)	1032, 1152
BseXI	GCAGC	4 cut(s)	473, 476, 625, 904
BshFI	GGCC	2 cut(s)	1105, 1124
BshNI	GGYRCC	1 cut(s)	798
BshVI	ATCGAT	1 cut(s)	1116
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	802, 919
BslI	CCNNNNNNNGG	2 cut(s)	585, 1066
BsmFI	GGGAC	2 cut(s)	802, 919
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	1105, 1124
BsoBI	CYCGRG	1 cut(s)	1004
Bsp143I	GATC	5 cut(s)	164, 199, 775, 991, 1113
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	2 cut(s)	1105, 1124
BspCNI	CTCAG	2 cut(s)	263, 748
BspDI	ATCGAT	1 cut(s)	1116
BspLI	GGNNCC	2 cut(s)	674, 800
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	2 cut(s)	172, 986
BspT107I	GGYRCC	1 cut(s)	798
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	5 cut(s)	12, 590, 892, 973, 1071
BssECI	CCNNGG	1 cut(s)	1125
BssMI	GATC	5 cut(s)	164, 199, 775, 991, 1113
BssT1I	CCWWGG	1 cut(s)	1125
BstC8I	GCNNGC	3 cut(s)	532, 618, 1032
BstDEI	CTNAG	3 cut(s)	250, 493, 756
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	5 cut(s)	167, 202, 778, 994, 1116
BstMBI	GATC	5 cut(s)	164, 199, 775, 991, 1113
BstNSI	RCATGY	3 cut(s)	530, 770, 962
BstSFI	CTRYAG	3 cut(s)	22, 552, 918
BstV1I	GCAGC	4 cut(s)	473, 476, 625, 904
BstX2I	RGATCY	2 cut(s)	199, 775
BstYI	RGATCY	2 cut(s)	199, 775
Bsu15I	ATCGAT	1 cut(s)	1116
BsuRI	GGCC	2 cut(s)	1105, 1124
BsuTUI	ATCGAT	1 cut(s)	1116
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	1064
Cac8I	GCNNGC	3 cut(s)	532, 618, 1032
ClaI	ATCGAT	1 cut(s)	1116
Csp6I	GTAC	4 cut(s)	118, 302, 799, 1136
CviAII	CATG	4 cut(s)	132, 527, 767, 959
CviQI	GTAC	4 cut(s)	118, 302, 799, 1136
DdeI	CTNAG	3 cut(s)	250, 493, 756
DpnI	GATC	5 cut(s)	166, 201, 777, 993, 1115
DpnII	GATC	5 cut(s)	164, 199, 775, 991, 1113
EaeI	YGGCCR	1 cut(s)	1122
EciI	GGCGGA	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	1125
Eco88I	CYCGRG	1 cut(s)	1004
EcoT14I	CCWWGG	1 cut(s)	1125
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	1125
FaeI	CATG	4 cut(s)	135, 530, 770, 962
FalI	AAGNNNNNCTT	1 cut(s)	1139
FaqI	GGGAC	2 cut(s)	802, 919
FatI	CATG	4 cut(s)	131, 526, 766, 958
FauNDI	CATATG	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	1151
Fnu4HI	GCNGC	4 cut(s)	487, 490, 614, 918
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	487, 490, 614, 918
FspBI	CTAG	5 cut(s)	213, 305, 515, 594, 1168
GluI	GCNGC	4 cut(s)	487, 490, 614, 918
HaeIII	GGCC	2 cut(s)	1105, 1124
HapII	CCGG	1 cut(s)	333
Hin1II	CATG	4 cut(s)	135, 530, 770, 962
HinfI	GANTC	4 cut(s)	386, 575, 737, 932
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	3 cut(s)	22, 85, 322
Hpy166II	GTNNAC	1 cut(s)	1152
Hpy188I	TCNGA	3 cut(s)	727, 736, 981
Hpy188III	TCNNGA	4 cut(s)	428, 755, 883, 1085
Hpy8I	GTNNAC	1 cut(s)	1152
HpyAV	CCTTC	4 cut(s)	139, 361, 365, 658
HpyCH4V	TGCA	8 cut(s)	314, 396, 448, 530, 608, 831, 920, 1080
HpyF3I	CTNAG	3 cut(s)	250, 493, 756
Hsp92II	CATG	4 cut(s)	135, 530, 770, 962
KpnI	GGTACC	1 cut(s)	802
Kzo9I	GATC	5 cut(s)	164, 199, 775, 991, 1113
Lsp1109I	GCAGC	4 cut(s)	473, 476, 625, 904
LweI	GCATC	2 cut(s)	145, 195
MaeI	CTAG	5 cut(s)	213, 305, 515, 594, 1168
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	5 cut(s)	166, 201, 777, 993, 1115
MboI	GATC	5 cut(s)	164, 199, 775, 991, 1113
MboII	GAAGA	5 cut(s)	209, 282, 629, 785, 1034
MflI	RGATCY	2 cut(s)	199, 775
MlsI	TGGCCA	1 cut(s)	1124
MluCI	AATT	5 cut(s)	224, 397, 476, 953, 1140
MluNI	TGGCCA	1 cut(s)	1124
MlyI	GAGTC	4 cut(s)	380, 569, 731, 941
MnlI	CCTC	9 cut(s)	20, 220, 372, 412, 551, 762, 1000, 1010, 1170
Mox20I	TGGCCA	1 cut(s)	1124
Mph1103I	ATGCAT	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	898
MscI	TGGCCA	1 cut(s)	1124
MseI	TTAA	6 cut(s)	33, 177, 227, 363, 570, 581
MslI	CAYNNNNRTG	3 cut(s)	465, 963, 1075
Msp20I	TGGCCA	1 cut(s)	1124
MspA1I	CMGCKG	2 cut(s)	254, 687
MspI	CCGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	316
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	5 cut(s)	164, 199, 775, 991, 1113
NlaIII	CATG	4 cut(s)	135, 530, 770, 962
NlaIV	GGNNCC	2 cut(s)	674, 800
NmuCI	GTSAC	1 cut(s)	428
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	3 cut(s)	530, 770, 962
PaeR7I	CTCGAG	1 cut(s)	1004
PciI	ACATGT	1 cut(s)	766
PctI	GAATGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	898
PkrI	GCNGC	4 cut(s)	488, 491, 615, 919
PleI	GAGTC	4 cut(s)	380, 569, 731, 940
PpsI	GAGTC	4 cut(s)	380, 569, 731, 940
PscI	ACATGT	1 cut(s)	766
PsiI	TTATAA	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	674, 800
PspXI	VCTCGAGB	1 cut(s)	1004
PstI	CTGCAG	1 cut(s)	922
PsuI	RGATCY	2 cut(s)	199, 775
PvuII	CAGCTG	2 cut(s)	254, 687
RsaI	GTAC	4 cut(s)	119, 303, 800, 1137
RsaNI	GTAC	4 cut(s)	118, 302, 799, 1136
RseI	CAYNNNNRTG	3 cut(s)	465, 963, 1075
SaqAI	TTAA	6 cut(s)	33, 177, 227, 363, 570, 581
SatI	GCNGC	4 cut(s)	487, 490, 614, 918
Sau3AI	GATC	5 cut(s)	164, 199, 775, 991, 1113
SchI	GAGTC	4 cut(s)	380, 569, 731, 941
SfaNI	GCATC	2 cut(s)	145, 195
SfcI	CTRYAG	3 cut(s)	22, 552, 918
Sfr274I	CTCGAG	1 cut(s)	1004
SlaI	CTCGAG	1 cut(s)	1004
SmiMI	CAYNNNNRTG	3 cut(s)	465, 963, 1075
SmlI	CTYRAG	3 cut(s)	1004, 1052, 1083
SmoI	CTYRAG	3 cut(s)	1004, 1052, 1083
Sse9I	AATT	5 cut(s)	224, 397, 476, 953, 1140
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	5 cut(s)	213, 305, 515, 594, 1168
StyI	CCWWGG	1 cut(s)	1125
TaqI	TCGA	3 cut(s)	402, 1005, 1116
TasI	AATT	5 cut(s)	224, 397, 476, 953, 1140
TatI	WGTACW	2 cut(s)	117, 301
Tru1I	TTAA	6 cut(s)	33, 177, 227, 363, 570, 581
Tru9I	TTAA	6 cut(s)	33, 177, 227, 363, 570, 581
TscAI	CASTG	1 cut(s)	1071
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	4 cut(s)	486, 489, 613, 917
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	5 cut(s)	17, 273, 275, 629, 656
TspRI	CASTG	1 cut(s)	1071
XceI	RCATGY	3 cut(s)	530, 770, 962
XhoI	CTCGAG	1 cut(s)	1004
XmiI	GTMKAC	1 cut(s)	1151
XmnI	GAANNNNTTC	1 cut(s)	898
XspI	CTAG	5 cut(s)	213, 305, 515, 594, 1168
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.