Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Forward (+)

5385014 .. 5389104

Gene Structure 4091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0042300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATAGAGCTGTTTAATGGGAAAGGAGGTTTGGTAGAAGGAGTAATACAAACGGTGGACCGGTCCGGGCTTGATTTCGTGGCGTTGGAAGATCCAAAGTTGGTTCTTCCACAGAGCACGCAGTGGCATGTGTTTGTAGCTTTTGGTACTTTAAAGGGCGGTCGAGCTGATTGGCTTGTTGAGAAATGCACGGAGCTGGGGGCTAGTAGTGTAACTCCTCTGCTGACAGAACGTTCTCCTACTATCTCGGAAAATAGGCTGGATAGGTTGCAGAGAGTCAATATGGCAGCTGCTAAACAATGTCAACGGCTCCATGAAATGGTATTGAATCCCCCAATGAAAATTGATCGTCTTTTGCCCCTTGTTGCACAGTCCAAGCTATCTTTTTTGGCGGTTGCAGAAGCTACTCCTCTTGTTACTGCATTAACTTCGTCAAGAAGGGAGACCAGTGGGCTGATTGTGGTTGGACCAGAAGGCGACTTCACGGAGAAAGAGGTGTATGAATTGTTAAAAGCTGGGTCAATCTCTGTTGGTCTTGGCCCACATCGACTCCGGGTAGAAACTGCTACAGTGGCTCTTCTGGCAACTCTGATGTTATGGTCTGATTCTCAAGAAAAGTGTGGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004044 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006144 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009112 GO:0009113 GO:0009117 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019637 GO:0030312 GO:0034641 GO:0034654 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046112 GO:0046148 GO:0046483 GO:0055086 GO:0071704 GO:0071840 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00250 ko01100 ko01110 ko01130 map00230 map00250 map01100 map01110 map01130

Pfam Domains

Protein Families

GATase_7 Pribosyltran

Protein Analysis

209

Amino Acids

22.72

Weight (kDa)

5.97

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltrans_RNA	PF04452	42 - 197	6.1e-38	RNA methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AciI	CCGC	2 cut(s)	159, 392
AclI	AACGTT	1 cut(s)	232
AclWI	GGATC	1 cut(s)	86
AdeI	CACNNNGTG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	8 cut(s)	10, 140, 167, 196, 290, 379, 404, 515
AluI	AGCT	8 cut(s)	10, 140, 167, 196, 290, 379, 404, 515
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	2 cut(s)	287, 290
AsiGI	ACCGGT	1 cut(s)	60
AspS9I	GGNCC	4 cut(s)	58, 63, 467, 539
AsuC2I	CCSGG	2 cut(s)	67, 554
AvaII	GGWCC	3 cut(s)	58, 63, 467
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	277, 299
BceAI	ACGGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BcnI	CCSGG	2 cut(s)	67, 554
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	567
BisI	GCNGC	2 cut(s)	288, 291
BlsI	GCNGC	2 cut(s)	289, 292
Bme1390I	CCNGG	2 cut(s)	67, 554
Bme18I	GGWCC	3 cut(s)	58, 63, 467
BmgT120I	GGNCC	4 cut(s)	58, 63, 467, 539
BmiI	GGNNCC	2 cut(s)	311, 625
BmrFI	CCNGG	2 cut(s)	67, 554
BpuEI	CTTGAG	1 cut(s)	594
BpuMI	CCSGG	2 cut(s)	67, 554
BsaI	GGTCTC	1 cut(s)	437
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse118I	RCCGGY	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	2 cut(s)	207, 399
BseXI	GCAGC	2 cut(s)	277, 299
BseYI	CCCAGC	2 cut(s)	196, 515
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	540
BshTI	ACCGGT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	61, 66, 553
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	540
Bso31I	GGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	91, 346
BspACI	CCGC	2 cut(s)	159, 392
BspANI	GGCC	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	311, 625
BspPI	GGATC	1 cut(s)	86
BspQI	GCTCTTC	1 cut(s)	582
BspTNI	GGTCTC	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	60
BssMI	GATC	2 cut(s)	91, 346
Bst4CI	ACNGT	3 cut(s)	55, 372, 571
Bst6I	CTCTTC	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	94, 349
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	2 cut(s)	91, 346
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	2 cut(s)	572, 581
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	65, 552
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	277, 299
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	540
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	3 cut(s)	128, 454, 576
Cac8I	GCNNGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	60
Cfr13I	GGNCC	4 cut(s)	58, 63, 467, 539
CpoI	CGGWCCG	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	147
CspAI	ACCGGT	1 cut(s)	60
CspI	CGGWCCG	1 cut(s)	63
CviAII	CATG	2 cut(s)	128, 314
CviQI	GTAC	1 cut(s)	147
DpnI	GATC	2 cut(s)	93, 348
DpnII	GATC	2 cut(s)	91, 346
DraI	TTTAAA	1 cut(s)	153
DraIII	CACNNNGTG	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco31I	GGTCTC	1 cut(s)	437
Eco47I	GGWCC	3 cut(s)	58, 63, 467
FaeI	CATG	2 cut(s)	131, 317
FaiI	YATR	5 cut(s)	129, 284, 315, 501, 598
FatI	CATG	2 cut(s)	127, 313
Fnu4HI	GCNGC	2 cut(s)	288, 291
Fsp4HI	GCNGC	2 cut(s)	288, 291
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	2 cut(s)	288, 291
GsaI	CCCAGC	2 cut(s)	200, 519
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	3 cut(s)	61, 66, 553
Hin1II	CATG	2 cut(s)	131, 317
HincII	GTYRAC	1 cut(s)	305
HindII	GTYRAC	1 cut(s)	305
HinfI	GANTC	4 cut(s)	276, 328, 549, 605
HpaII	CCGG	3 cut(s)	61, 66, 553
Hpy166II	GTNNAC	2 cut(s)	58, 305
Hpy188I	TCNGA	3 cut(s)	250, 591, 604
Hpy188III	TCNNGA	2 cut(s)	435, 611
Hpy8I	GTNNAC	2 cut(s)	58, 305
HpyAV	CCTTC	3 cut(s)	32, 432, 467
HpyCH4III	ACNGT	3 cut(s)	55, 372, 571
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	189, 271, 368, 398, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	572, 581
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	2 cut(s)	131, 317
Kzo9I	GATC	2 cut(s)	91, 346
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	2 cut(s)	193, 315
LpnPI	CCDG	9 cut(s)	74, 79, 182, 245, 460, 483, 501, 566, 566
Lsp1109I	GCAGC	2 cut(s)	277, 299
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	211, 415
MalI	GATC	2 cut(s)	93, 348
MboI	GATC	2 cut(s)	91, 346
MboII	GAAGA	3 cut(s)	98, 101, 569
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	2 cut(s)	342, 503
MlyI	GAGTC	2 cut(s)	285, 543
MmeI	TCCRAC	2 cut(s)	66, 445
MnlI	CCTC	4 cut(s)	20, 228, 420, 487
MseI	TTAA	4 cut(s)	15, 152, 425, 509
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	3 cut(s)	61, 66, 553
MspR9I	CCNGG	2 cut(s)	67, 554
MwoI	GCNNNNNNNGC	2 cut(s)	572, 581
NciI	CCSGG	2 cut(s)	67, 554
NdeII	GATC	2 cut(s)	91, 346
NlaIII	CATG	2 cut(s)	131, 317
NlaIV	GGNNCC	2 cut(s)	311, 625
NspI	RCATGY	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	328, 605
PflMI	CCANNNNNTGG	1 cut(s)	319
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	289, 292
PleI	GAGTC	2 cut(s)	284, 543
PpsI	GAGTC	2 cut(s)	284, 543
Psp1406I	AACGTT	1 cut(s)	232
PspFI	CCCAGC	2 cut(s)	196, 515
PspN4I	GGNNCC	2 cut(s)	311, 625
PspPI	GGNCC	4 cut(s)	58, 63, 467, 539
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
Rsr2I	CGGWCCG	1 cut(s)	63
RsrII	CGGWCCG	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	4 cut(s)	15, 152, 425, 509
SatI	GCNGC	2 cut(s)	288, 291
Sau3AI	GATC	2 cut(s)	91, 346
Sau96I	GGNCC	4 cut(s)	58, 63, 467, 539
SchI	GAGTC	2 cut(s)	285, 543
ScrFI	CCNGG	2 cut(s)	67, 554
SduI	GDGCHC	1 cut(s)	119
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	3 cut(s)	58, 63, 467
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	2 cut(s)	342, 503
SsiI	CCGC	2 cut(s)	159, 392
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	65, 552
TaaI	ACNGT	3 cut(s)	55, 372, 571
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	163, 547
TasI	AATT	2 cut(s)	342, 503
TfiI	GAWTC	2 cut(s)	328, 605
Tru1I	TTAA	4 cut(s)	15, 152, 425, 509
Tru9I	TTAA	4 cut(s)	15, 152, 425, 509
TscAI	CASTG	3 cut(s)	128, 454, 576
TseI	GCWGC	2 cut(s)	287, 290
TspDTI	ATGAA	3 cut(s)	330, 353, 516
TspGWI	ACGGA	2 cut(s)	206, 500
TspRI	CASTG	3 cut(s)	128, 454, 576
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	3 cut(s)	58, 63, 467
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.