FvH4_3g30932

BED zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001143
Physical Location & Seq
Forward (+)
24548733 .. 24552443
3711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30932.t1

Sequence Viewer

Length: 735 bp
ATGGCGAGAGGAAAGAAAGTAATTGTGCGACCCAACCGTTCTGCTTCTGGCCTTCAAAATTCATCAACAGCGACATCAGTAGCATCACCATCTCCTCTAGTTACATCCGTCTCTCTGGTCGAAGCTACAAACCCAAGTTCAAGTCAGCCTCCTGCAAGTGAACCCGAGATTGAAGTTGGTCAAGTTGCTGCATCTGTAGGCGAGGGTGGTGTGGCTTCTGCTGCTGCATCTGTAGGTGAGGATGGTGATGGTCTTGCACAATCAGGTACGAAATGGACTAGTCATGTTTGGGAGCATTTCAAAGAGTATGAGAAAATTGAGAGAGTGAAAGATGCAGAGGGGAAGATAATTGAGATAGTTCATAAAAGGGCTCATTGCATCTACTGTCATAAGGGTAAGATTGGGGACTTTTCTGTTGAGAGTAAGAGTGGCACCTCTGGATTGCTTAGGCACATGCACATCAACCAAAACTGTAGGTATTTTCCAGGTGAGATGATTGTGATTGATGAGCTACCTTTTAGCTTTGTGGAGAAGAAAGGGTTCCGTGGATTTTGTAGGAAAGTTTGTCCTCTATTTGATGTTCCAAGTAGAAGTAAATTGTGTAACGCCTTTCTAGTAACCACAATGGATATGGATGAGGGCAAGGGGGTTAGCTCTGATGGCGATGAGGGCAAGGGAGCAAAGCAGCTCGATACTGGCGAGGGCAAGAAGGCTTCTGCTGAGGCGGTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

245

Amino Acids

25.99

Weight (kDa)

6.66

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AciI CCGC 1 cut(s) 725
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 4 cut(s) 56, 141, 173, 301
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 5 cut(s) 125, 511, 522, 654, 688
AluI AGCT 5 cut(s) 125, 511, 522, 654, 688
Alw26I GTCTC 1 cut(s) 115
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 4 cut(s) 188, 221, 224, 685
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 539
AsuHPI GGTGA 4 cut(s) 78, 248, 257, 500
AvaI CYCGRG 1 cut(s) 164
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 373
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 4 cut(s) 175, 208, 211, 697
BccI CCATC 4 cut(s) 97, 236, 242, 653
BciT130I CCWGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 115
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 3 cut(s) 98, 279, 614
BfmI CTRYAG 3 cut(s) 195, 231, 472
BisI GCNGC 4 cut(s) 189, 222, 225, 686
BlsI GCNGC 4 cut(s) 190, 223, 226, 687
Bme1390I CCNGG 1 cut(s) 486
BmeT110I CYCGRG 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 433, 542
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 5 cut(s) 92, 200, 236, 322, 387
Bpu10I CCTNAGC 2 cut(s) 446, 720
BsaJI CCNNGG 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 700
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 3 cut(s) 104, 247, 640
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 4 cut(s) 175, 208, 211, 697
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 373
BspACI CCGC 1 cut(s) 725
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 712
BspHI TCATGA 1 cut(s) 731
BspLI GGNNCC 2 cut(s) 433, 542
BspT107I GGYRCC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 1 cut(s) 700
BssECI CCNNGG 1 cut(s) 544
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 3 cut(s) 38, 386, 473
BstDEI CTNAG 2 cut(s) 446, 720
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 3 cut(s) 104, 247, 640
BstMAI GTCTC 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 221, 660, 669
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 3 cut(s) 195, 231, 472
BstV1I GCAGC 4 cut(s) 175, 208, 211, 697
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 678
BtsCI GGATG 3 cut(s) 104, 247, 640
CciI TCATGA 1 cut(s) 731
Csp6I GTAC 1 cut(s) 267
CviAII CATG 3 cut(s) 284, 454, 732
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 446, 720
Eco24I GRGCYC 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 3 cut(s) 287, 457, 735
FaiI YATR 7 cut(s) 285, 309, 363, 390, 455, 632, 733
FaqI GGGAC 1 cut(s) 419
FatI CATG 3 cut(s) 283, 453, 731
Fnu4HI GCNGC 4 cut(s) 189, 222, 225, 686
FokI GGATG 3 cut(s) 91, 254, 647
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 4 cut(s) 189, 222, 225, 686
FspBI CTAG 3 cut(s) 98, 279, 614
GluI GCNGC 4 cut(s) 189, 222, 225, 686
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 3 cut(s) 287, 457, 735
HphI GGTGA 4 cut(s) 78, 248, 257, 500
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 658
Hpy188III TCNNGA 2 cut(s) 438, 732
Hpy8I GTNNAC 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 62, 703
HpyCH4III ACNGT 3 cut(s) 38, 386, 473
HpyCH4V TGCA 7 cut(s) 155, 191, 227, 257, 335, 378, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 660, 669
HpyF3I CTNAG 2 cut(s) 446, 720
Hsp92II CATG 3 cut(s) 287, 457, 735
LmnI GCTCC 2 cut(s) 292, 677
LpnPI CCDG 8 cut(s) 33, 101, 165, 249, 423, 471, 498, 681
Lsp1109I GCAGC 4 cut(s) 175, 208, 211, 697
LweI GCATC 5 cut(s) 92, 200, 236, 322, 387
MaeI CTAG 3 cut(s) 98, 279, 614
MaeIII GTNAC 3 cut(s) 100, 602, 616
MboII GAAGA 2 cut(s) 355, 544
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 5 cut(s) 21, 58, 315, 348, 596
MroXI GAANNNNTTC 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 221, 660, 669
NlaIII CATG 3 cut(s) 287, 457, 735
NlaIV GGNNCC 2 cut(s) 433, 542
NspI RCATGY 1 cut(s) 457
PagI TCATGA 1 cut(s) 731
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PdmI GAANNNNTTC 1 cut(s) 539
PkrI GCNGC 4 cut(s) 190, 223, 226, 687
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 433, 542
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SatI GCNGC 4 cut(s) 189, 222, 225, 686
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 5 cut(s) 92, 200, 236, 322, 387
SfcI CTRYAG 3 cut(s) 195, 231, 472
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 5 cut(s) 21, 58, 315, 348, 596
SsiI CCGC 1 cut(s) 725
SspMI CTAG 3 cut(s) 98, 279, 614
StyD4I CCNGG 1 cut(s) 484
TaaI ACNGT 3 cut(s) 38, 386, 473
TaqI TCGA 2 cut(s) 120, 690
TasI AATT 5 cut(s) 21, 58, 315, 348, 596
TseI GCWGC 4 cut(s) 188, 221, 224, 685
TspDTI ATGAA 2 cut(s) 51, 350
TspGWI ACGGA 2 cut(s) 97, 533
XapI RAATTY 1 cut(s) 58
XceI RCATGY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 3 cut(s) 98, 279, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.