Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Forward (+)

27055828 .. 27067847

Gene Structure 12020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00021980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCAGTCCAACAAAAAAGCAAATGCCAAACTCCAACGCTGCCGAGTGCCGTCAAACTTCCTCCAAGCAATCCAGCTCCTTCACTTCATTCCTTAGTGTCTACTGCGAATGCGACAGTTCTCAAGCTACACGGTTGTGAGGACATCATTTCCGCCTCAATGATTGCTGGAGGTTTGTATATCGTTCTTCAGTTCCTATTACACAAAGCTTTCATTGACTACATATCTGAGCAGGAGAGTGAAAACTTTCTCTCCCGAAGACATGACAATGAGACTTCTGTTACCTTGACTACCATCCATAAGAACAATGCAAAGCTGTCAGATGTTGGCTTGGCCAAGGATGGGCCAACAGGTGATAAAATCCATGTCTCTACTAGGGTGATGGACACATATAGATATGCAGCCCCAGAATATTTATCCACAGCAAAACTAGAGGAAGAAATCGAAATGCATCAAAGTATCAAACATTCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.37

Weight (kDa)

6.43

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	101
AciI	CCGC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	471
AleI	CACNNNNGTG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	77, 127, 209, 316
AluI	AGCT	4 cut(s)	77, 127, 209, 316
Alw26I	GTCTC	2 cut(s)	266, 373
AoxI	GGCC	2 cut(s)	333, 344
ApeKI	GCWGC	2 cut(s)	40, 401
Asp700I	GAANNNNTTC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	365, 391
BalI	TGGCCA	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	27, 413
BccI	CCATC	3 cut(s)	302, 335, 376
BceAI	ACGGC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	266, 373
BfaI	CTAG	3 cut(s)	375, 431, 475
BisI	GCNGC	2 cut(s)	41, 402
BlsI	GCNGC	2 cut(s)	42, 403
BmgT120I	GGNCC	1 cut(s)	344
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	2 cut(s)	294, 346
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	27, 413
BshFI	GGCC	2 cut(s)	335, 346
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	2 cut(s)	266, 373
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	335, 346
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	2 cut(s)	335, 346
BspCNI	CTCAG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	118, 134
BstDEI	CTNAG	2 cut(s)	94, 228
BstF5I	GGATG	2 cut(s)	294, 346
BstMAI	GTCTC	2 cut(s)	266, 373
BstV1I	GCAGC	2 cut(s)	27, 413
BstV2I	GAAGAC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	335, 346
BtsCI	GGATG	2 cut(s)	294, 346
Cfr13I	GGNCC	1 cut(s)	344
CviAII	CATG	2 cut(s)	263, 365
CviJI	RGCY	8 cut(s)	77, 127, 209, 316, 330, 335, 346, 404
CviKI_1	RGCY	8 cut(s)	77, 127, 209, 316, 330, 335, 346, 404
DdeI	CTNAG	2 cut(s)	94, 228
EaeI	YGGCCR	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	266, 368
FaiI	YATR	8 cut(s)	180, 224, 264, 300, 366, 391, 393, 399
FatI	CATG	2 cut(s)	262, 364
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	2 cut(s)	41, 402
FokI	GGATG	2 cut(s)	281, 353
Fsp4HI	GCNGC	2 cut(s)	41, 402
FspBI	CTAG	3 cut(s)	375, 431, 475
GluI	GCNGC	2 cut(s)	41, 402
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	335, 346
Hin1II	CATG	2 cut(s)	266, 368
HindIII	AAGCTT	1 cut(s)	207
HphI	GGTGA	2 cut(s)	365, 391
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	229, 322
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	2 cut(s)	118, 134
HpyCH4V	TGCA	3 cut(s)	311, 401, 451
HpyF3I	CTNAG	2 cut(s)	94, 228
Hsp92II	CATG	2 cut(s)	266, 368
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	87, 153, 218, 336, 420
Lsp1109I	GCAGC	2 cut(s)	27, 413
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	3 cut(s)	375, 431, 475
MaeIII	GTNAC	1 cut(s)	280
MboII	GAAGA	3 cut(s)	179, 270, 449
MlsI	TGGCCA	1 cut(s)	335
MluNI	TGGCCA	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	34, 59
MnlI	CCTC	5 cut(s)	72, 133, 164, 166, 427
Mox20I	TGGCCA	1 cut(s)	335
Mph1103I	ATGCAT	1 cut(s)	453
MroXI	GAANNNNTTC	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	135, 267
Msp20I	TGGCCA	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	266, 368
NmeAIII	GCCGAG	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	453
OliI	CACNNNNGTG	1 cut(s)	135
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	42, 403
PspPI	GGNCC	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	135, 267
SatI	GCNGC	2 cut(s)	41, 402
Sau96I	GGNCC	1 cut(s)	344
SetI	ASST	7 cut(s)	79, 129, 175, 211, 287, 318, 355
SfaNI	GCATC	1 cut(s)	460
SmiMI	CAYNNNNRTG	2 cut(s)	135, 267
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SsiI	CCGC	1 cut(s)	153
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	3 cut(s)	375, 431, 475
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	118, 134
TaqI	TCGA	1 cut(s)	444
TseI	GCWGC	2 cut(s)	40, 401
TspDTI	ATGAA	2 cut(s)	77, 202
XmiI	GTMKAC	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	3 cut(s)	375, 431, 475
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.