RLG00000029746

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001143
Physical Location & Seq
Forward (+)
48306919 .. 48311764
4846 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029746

Sequence Viewer

Length: 408 bp
ATGGTGGCCGCTAGTCTCTCTGGTAGGAGATGGCCGGCGGAGCAGTGGGTCTGCTCTTGCTGCCCTGACCTTGCGAGGCCTGGCAGTGCTACTATGCAGCGCTTTGGCCAGCGGAAATGTTGCTCAGCGGAGTTTGGTGGAGACTTGGAACTGAATGGAGCAGAAGTGCTCGAAGGTCAGTTATTTGATTCAAATCGTTCGATGGCTAGAGCGAAGAAGGAAGTTGCTCGGCCTCATCCAACCTTTTCGGGGCTTGAAGACTCTTCAACCGCAACTTCACCTTCTGCTTCTCTTCAAATTGAAGCTCTTCCTCTAGCAACTTCAAGCCAGCAAGCTCCTACGGATTCAAACCAGCAAGCTCCTACGGGTTCAAATGTGTTTAATACTTCAAGACTTGTAGTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.36

Weight (kDa)

5.78

Isoelectric Point (pI)

58.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 9, 38, 112, 128, 270
AcoI YGGCCR 3 cut(s) 6, 32, 106
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 9 cut(s) 192, 257, 267, 296, 302, 324, 348, 372, 390
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 3 cut(s) 305, 335, 359
AluI AGCT 3 cut(s) 305, 335, 359
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 2 cut(s) 20, 135
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 5 cut(s) 6, 32, 77, 106, 230
ApeKI GCWGC 2 cut(s) 60, 97
Asp700I GAANNNNTTC 1 cut(s) 306
AspLEI GCGC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 270
BalI TGGCCA 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 47, 109
BccI CCATC 2 cut(s) 24, 196
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 20, 135
BfaI CTAG 4 cut(s) 12, 207, 314, 406
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 3 cut(s) 9, 61, 98
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 3 cut(s) 10, 62, 99
Bme1390I CCNGG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 47, 109
BshFI GGCC 5 cut(s) 8, 34, 79, 108, 232
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 2 cut(s) 20, 135
BsnI GGCC 5 cut(s) 8, 34, 79, 108, 232
Bsp1286I GDGCHC 1 cut(s) 171
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 5 cut(s) 9, 38, 112, 128, 270
BspANI GGCC 5 cut(s) 8, 34, 79, 108, 232
BspCNI CTCAG 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 81
Bst6I CTCTTC 3 cut(s) 268, 297, 312
BstC8I GCNNGC 5 cut(s) 36, 110, 329, 333, 357
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstMAI GTCTC 2 cut(s) 20, 135
BstMWI GCNNNNNNNGC 2 cut(s) 40, 60
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstV1I GCAGC 2 cut(s) 47, 109
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 5 cut(s) 8, 34, 79, 108, 232
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 2 cut(s) 50, 91
BtsIMutI CAGTG 2 cut(s) 50, 91
Cac8I GCNNGC 5 cut(s) 36, 110, 329, 333, 357
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 34
DdeI CTNAG 1 cut(s) 124
EaeI YGGCCR 3 cut(s) 6, 32, 106
Eam1104I CTCTTC 3 cut(s) 268, 297, 312
EarI CTCTTC 3 cut(s) 268, 297, 312
EciI GGCGGA 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 79
Eco47III AGCGCT 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 79
FaiI YATR 1 cut(s) 95
Fnu4HI GCNGC 3 cut(s) 9, 61, 98
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 9, 61, 98
FspBI CTAG 4 cut(s) 12, 207, 314, 406
GlaI GCGC 1 cut(s) 101
GluI GCNGC 3 cut(s) 9, 61, 98
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 5 cut(s) 8, 34, 79, 108, 232
HapII CCGG 1 cut(s) 35
HhaI GCGC 1 cut(s) 102
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 3 cut(s) 188, 260, 344
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 403
Hpy188III TCNNGA 1 cut(s) 390
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 3 cut(s) 167, 211, 291
HpyCH4V TGCA 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 60
HpyF3I CTNAG 1 cut(s) 124
HspAI GCGC 1 cut(s) 100
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 403
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 4 cut(s) 40, 158, 340, 364
LpnPI CCDG 8 cut(s) 6, 48, 66, 78, 93, 122, 341, 365
Lsp1109I GCAGC 2 cut(s) 47, 109
MaeI CTAG 4 cut(s) 12, 207, 314, 406
MboII GAAGA 5 cut(s) 226, 255, 269, 284, 299
MhlI GDGCHC 1 cut(s) 171
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 1 cut(s) 297
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 3 cut(s) 69, 243, 321
Mox20I TGGCCA 1 cut(s) 108
MroNI GCCGGC 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 381, 402
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 112, 128
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 40, 60
NaeI GCCGGC 1 cut(s) 36
NgoMIV GCCGGC 1 cut(s) 34
NmeAIII GCCGAG 1 cut(s) 208
PceI AGGCCT 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 188, 344
PkrI GCNGC 3 cut(s) 10, 62, 99
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 381, 402
SatI GCNGC 3 cut(s) 9, 61, 98
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 171
SetI ASST 7 cut(s) 72, 178, 245, 283, 307, 337, 361
Sse9I AATT 1 cut(s) 297
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 5 cut(s) 9, 38, 112, 128, 270
SspMI CTAG 4 cut(s) 12, 207, 314, 406
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 79
TaqI TCGA 2 cut(s) 171, 200
TasI AATT 1 cut(s) 297
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 188, 344
Tru1I TTAA 2 cut(s) 381, 402
Tru9I TTAA 2 cut(s) 381, 402
TscAI CASTG 2 cut(s) 50, 91
TseI GCWGC 2 cut(s) 60, 97
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 2 cut(s) 50, 91
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 4 cut(s) 12, 207, 314, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.