Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Forward (+)

18167005 .. 18168236

Gene Structure 1232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCTTCACAGCCTCCTCCCCCTTGCCGTCGGCCTCAGGCTGCTCAGGTAGAACCAAATCCTCTCCGGCGCCGGCGGACGACAGCATCCACTTTACGTGATTTGAAGGAAGCGAAAGAAGAGGTTGCTAAGTACAAGATTGATGAGAATGTTCAGAGGGAAACCATAAATCACAGATCCTTGAGGCATCCAAATATTGTCAGGTTCAAAGAGGTCTTGTTGACTCCAAGTCATTTAGCTATTGTCATGGAATATGTAGATGGTGGTGAGTTATTTGAGAGGATATATAGTGCTGGTAGATTTAGTGAAGCTGAGGTGTTGATTTTTCTTCCAGCAACTGATATGTGGAGTCAGATACTGTCAGTCCATGGTAAATTATATTTGATGCAGATACATTATGAAATGGTTTCCTTGTTTAAAATAATATTGCTTCTTTTCTCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

148

Amino Acids

17.2

Weight (kDa)

8.97

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	35 - 120	5.3e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	35 - 98	6.1e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	106, 208
AhdI	GACNNNNNGTC	1 cut(s)	228
AluBI	AGCT	2 cut(s)	239, 311
AluI	AGCT	2 cut(s)	239, 311
AlwI	GGATC	1 cut(s)	171
AlwNI	CAGNNNCTG	2 cut(s)	338, 358
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	278
AxyI	CCTNAGG	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	73
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	228
BmiI	GGNNCC	1 cut(s)	71
BmsI	GCATC	3 cut(s)	95, 196, 375
Bpu10I	CCTNAGC	2 cut(s)	45, 312
BpuEI	CTTGAG	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	367
Bse118I	RCCGGY	1 cut(s)	72
Bse21I	CCTNAGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	2 cut(s)	86, 187
BseMII	CTCAG	3 cut(s)	50, 59, 303
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	67, 73
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	176
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	3 cut(s)	49, 58, 304
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	1 cut(s)	176
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	4 cut(s)	36, 45, 129, 312
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	2 cut(s)	86, 187
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
Bsu36I	CCTNAGG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	86, 187
Cac8I	GCNNGC	1 cut(s)	74
CaiI	CAGNNNCTG	2 cut(s)	338, 358
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	3 cut(s)	247, 368, 441
CviJI	RGCY	5 cut(s)	13, 34, 41, 239, 311
CviKI_1	RGCY	5 cut(s)	13, 34, 41, 239, 311
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	4 cut(s)	36, 45, 129, 312
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
DraI	TTTAAA	1 cut(s)	418
DriI	GACNNNNNGTC	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	114
Eam1105I	GACNNNNNGTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	367
Eco81I	CCTNAGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	367
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	3 cut(s)	250, 371, 444
FatI	CATG	3 cut(s)	246, 367, 440
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	73, 174
Fsp4HI	GCNGC	1 cut(s)	42
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	2 cut(s)	67, 73
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	250, 371, 444
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	2 cut(s)	223, 349
HpaII	CCGG	2 cut(s)	67, 73
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	2 cut(s)	156, 354
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	15, 100
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	4 cut(s)	36, 45, 129, 312
HpySE526I	ACGT	1 cut(s)	97
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	250, 371, 444
HspAI	GCGC	1 cut(s)	70
KasI	GGCGCC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	176
LpnPI	CCDG	7 cut(s)	23, 32, 80, 86, 187, 279, 345
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	3 cut(s)	95, 196, 375
MaeII	ACGT	1 cut(s)	97
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	2 cut(s)	131, 320
MflI	RGATCY	1 cut(s)	176
MluCI	AATT	1 cut(s)	374
Mly113I	GGCGCC	1 cut(s)	70
MlyI	GAGTC	2 cut(s)	217, 358
MreI	CGCCGGCG	1 cut(s)	72
MroNI	GCCGGC	1 cut(s)	72
MseI	TTAA	2 cut(s)	417, 445
MspI	CCGG	2 cut(s)	67, 73
MwoI	GCNNNNNNNGC	1 cut(s)	10
NaeI	GCCGGC	1 cut(s)	74
NarI	GGCGCC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	1 cut(s)	176
NgoMIV	GCCGGC	1 cut(s)	72
NlaIII	CATG	3 cut(s)	250, 371, 444
NlaIV	GGNNCC	1 cut(s)	71
PdiI	GCCGGC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	2 cut(s)	217, 357
PluTI	GGCGCC	1 cut(s)	73
PpsI	GAGTC	2 cut(s)	217, 357
Ppu21I	YACGTR	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	71
PstNI	CAGNNNCTG	2 cut(s)	338, 358
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	2 cut(s)	417, 445
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	176
SchI	GAGTC	2 cut(s)	217, 358
SetI	ASST	8 cut(s)	51, 100, 126, 206, 216, 241, 313, 318
SfaNI	GCATC	3 cut(s)	95, 196, 375
SfoI	GGCGCC	1 cut(s)	71
SgrAI	CRCCGGYG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	1 cut(s)	374
SsiI	CCGC	1 cut(s)	76
SspDI	GGCGCC	1 cut(s)	69
SspI	AATATT	2 cut(s)	196, 426
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	360
TaiI	ACGT	1 cut(s)	100
TasI	AATT	1 cut(s)	374
TatI	WGTACW	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	417, 445
Tru9I	TTAA	2 cut(s)	417, 445
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.