Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Reverse (-)

32211395 .. 32214437

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40821.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGAGAGGAAAGAAAGTAATTATGCGACCCAACCGTTCTACTTCTGGCCTTCAGAATTCGTCAACGGCGACATCAGTAGCATCACCATCTCCTCTAGTTACATCAGTCCCTCTGCTCAAAGCTACAAACCCAAGTTCAAGTGAACTCGGGATTGAAGTTGGTCAAGTTGCTGCATTTGTAGGCGAGGGTGGTGTGGATTCTGCTACTGCATCTGTAGGCGAGGGTGGTGTGGCTTCTGCTGCTGCATCTGTAGGTGAGGATGGTGATGGTCCTGCTCAATCAGGTACGAAACGTACTAGTCATGTTTGGGAGTATTTCAAAGAGTATGAGAAAATTGAGAGAGTGAAAGATGCTGAGGGGAAGATAGTTGAGATAGTTCATAAAAGGGCTCATTGCATCTACTGTCCTAAGGAGGAAGAATATGATGAAGATGGAGTTCTTTTACCAAGTAACAATAAGAGAGCAAGGGTGGGACCTCCAGAAGAAGGAGATTGGTTGAAGGCTGGTGTGTTTGTCGATATGTTAAGAGTTTTTTGGGAAGTGACTCTAAGAAATAGTGCATCATTGCACCCTACTATGCACACTGTTTTTGCTGATGTGATTGATATGGAAAACAACATAAATAGCTTGTTTGTGGCACCGGAGATGGCAACTGGATCAGAAACTGAAAAGACATTGCAAGATATGGCAGGCAATATGAGAAGCAGATGGATGAAGTATTTTGGCTCTTTTGGGGACCTTAACAACATCTTGATCATTGGACTAGTTTTGGATGCAAGATTTAAGTTGAAGAATGTGACTCACATGTATAATGAACAGAATCTGGATGTTGATGAGGTGGAGAGGAGAACAAAGGTGATTAAACACTTGCTTATGGCTCTCTATGATCAGAGCTCATTAACTCCTAAATCAGTGGAGGGACTGATTTGCATGCAAAACTGGATGTTAGGTGATGATATTGCAGAGGTTGTCGAAGATATTGATGAACCAACAATTGAAAACACAAAGTTTTATTACGATGTTGAGCGAGGTAATATTGGGGCGGGATGGCGGGATTGGGCCCGTCCCGTCCCGGTCCCGTCTGGGACGGGACTTGCGTGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

370

Amino Acids

40.6

Weight (kDa)

4.99

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	188 - 291	2e-09	hAT-like transposase, RNase-H fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	640
AciI	CCGC	2 cut(s)	1046, 1054
AclWI	GGATC	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	289, 298
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	6 cut(s)	141, 158, 322, 502, 793, 1001
AhlI	ACTAGT	2 cut(s)	299, 766
AluBI	AGCT	3 cut(s)	125, 630, 897
AluI	AGCT	3 cut(s)	125, 630, 897
Alw21I	GWGCWC	1 cut(s)	899
AlwI	GGATC	1 cut(s)	667
AlwNI	CAGNNNCTG	2 cut(s)	668, 826
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	49, 1062
ApaI	GGGCCC	1 cut(s)	1066
ApeKI	GCWGC	3 cut(s)	173, 242, 245
ApoI	RAATTY	1 cut(s)	58
AspS9I	GGNCC	6 cut(s)	272, 476, 739, 1062, 1063, 1078
AsuC2I	CCSGG	1 cut(s)	1076
AsuHPI	GGTGA	5 cut(s)	78, 269, 278, 871, 965
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	4 cut(s)	272, 476, 739, 1078
AxyI	CCTNAGG	1 cut(s)	411
BaeGI	GKGCMC	1 cut(s)	1066
BanI	GGYRCC	1 cut(s)	640
BanII	GRGCYC	3 cut(s)	394, 899, 1066
Bbv12I	GWGCWC	1 cut(s)	899
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	160, 229, 232
BccI	CCATC	7 cut(s)	97, 257, 263, 428, 643, 705, 1044
BceAI	ACGGC	1 cut(s)	84
BclI	TGATCA	2 cut(s)	756, 889
BcnI	CCSGG	1 cut(s)	1076
BcuI	ACTAGT	2 cut(s)	299, 766
BfaI	CTAG	3 cut(s)	98, 300, 767
BfmI	CTRYAG	2 cut(s)	216, 252
BisI	GCNGC	3 cut(s)	174, 243, 246
BlsI	GCNGC	3 cut(s)	175, 244, 247
Bme1390I	CCNGG	1 cut(s)	1076
Bme18I	GGWCC	4 cut(s)	272, 476, 739, 1078
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	6 cut(s)	272, 476, 739, 1062, 1063, 1078
BmiI	GGNNCC	5 cut(s)	477, 642, 740, 1064, 1080
BmrFI	CCNGG	1 cut(s)	1076
BmsI	GCATC	7 cut(s)	92, 221, 257, 343, 408, 572, 766
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	357
BpuMI	CCSGG	1 cut(s)	1076
BsaWI	WCCGGW	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	661, 947
Bse21I	CCTNAGG	1 cut(s)	411
Bse3DI	GCAATG	3 cut(s)	394, 566, 677
BseGI	GGATG	6 cut(s)	268, 720, 781, 835, 951, 1055
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	3 cut(s)	394, 566, 677
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	661, 947
BseRI	GAGGAG	2 cut(s)	84, 862
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	3 cut(s)	160, 229, 232
BshFI	GGCC	2 cut(s)	51, 1064
BshNI	GGYRCC	1 cut(s)	640
BsiHKAI	GWGCWC	1 cut(s)	899
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	644, 1076
BslFI	GGGAC	8 cut(s)	95, 489, 752, 936, 1053, 1058, 1064, 1102
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmFI	GGGAC	8 cut(s)	95, 489, 752, 936, 1053, 1058, 1064, 1102
BsnI	GGCC	2 cut(s)	51, 1064
BsoBI	CYCGRG	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	1062
Bsp1286I	GDGCHC	3 cut(s)	394, 899, 1066
Bsp143I	GATC	3 cut(s)	659, 756, 889
BspACI	CCGC	2 cut(s)	1046, 1054
BspANI	GGCC	2 cut(s)	51, 1064
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	5 cut(s)	477, 642, 740, 1064, 1080
BspPI	GGATC	1 cut(s)	667
BspT107I	GGYRCC	1 cut(s)	640
BsrDI	GCAATG	3 cut(s)	394, 566, 677
BsrI	ACTGG	2 cut(s)	661, 947
BssMI	GATC	3 cut(s)	659, 756, 889
Bst4CI	ACNGT	3 cut(s)	38, 407, 589
BstC8I	GCNNGC	2 cut(s)	694, 935
BstDEI	CTNAG	3 cut(s)	357, 411, 551
BstF5I	GGATG	6 cut(s)	268, 720, 781, 835, 951, 1055
BstKTI	GATC	3 cut(s)	662, 759, 892
BstMBI	GATC	3 cut(s)	659, 756, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	2 cut(s)	811, 937
BstSCI	CCNGG	1 cut(s)	1074
BstSFI	CTRYAG	2 cut(s)	216, 252
BstSLI	GKGCMC	1 cut(s)	1066
BstV1I	GCAGC	3 cut(s)	160, 229, 232
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	51, 1064
BtsCI	GGATG	6 cut(s)	268, 720, 781, 835, 951, 1055
BtsIMutI	CAGTG	2 cut(s)	585, 921
Cac8I	GCNNGC	2 cut(s)	694, 935
CaiI	CAGNNNCTG	2 cut(s)	668, 826
Cfr13I	GGNCC	6 cut(s)	272, 476, 739, 1062, 1063, 1078
Csp6I	GTAC	2 cut(s)	288, 297
CviAII	CATG	3 cut(s)	305, 808, 934
CviQI	GTAC	2 cut(s)	288, 297
DdeI	CTNAG	3 cut(s)	357, 411, 551
DpnI	GATC	3 cut(s)	661, 758, 891
DpnII	GATC	3 cut(s)	659, 756, 889
Ecl136II	GAGCTC	1 cut(s)	897
Eco24I	GRGCYC	3 cut(s)	394, 899, 1066
Eco47I	GGWCC	4 cut(s)	272, 476, 739, 1078
Eco53kI	GAGCTC	1 cut(s)	897
Eco57I	CTGAAG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	897
EcoO109I	RGGNCCY	2 cut(s)	476, 739
EcoRI	GAATTC	1 cut(s)	58
EcoT38I	GRGCYC	3 cut(s)	394, 899, 1066
FaeI	CATG	3 cut(s)	308, 811, 937
FaqI	GGGAC	8 cut(s)	95, 489, 752, 936, 1053, 1058, 1064, 1102
FatI	CATG	3 cut(s)	304, 807, 933
FauI	CCCGC	2 cut(s)	1039, 1047
FbaI	TGATCA	2 cut(s)	756, 889
Fnu4HI	GCNGC	3 cut(s)	174, 243, 246
FokI	GGATG	6 cut(s)	275, 727, 788, 842, 958, 1062
FriOI	GRGCYC	3 cut(s)	394, 899, 1066
Fsp4HI	GCNGC	3 cut(s)	174, 243, 246
FspBI	CTAG	3 cut(s)	98, 300, 767
GluI	GCNGC	3 cut(s)	174, 243, 246
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	51, 1064
HapII	CCGG	2 cut(s)	644, 1076
Hin1II	CATG	3 cut(s)	308, 811, 937
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	4 cut(s)	200, 547, 802, 823
HpaII	CCGG	2 cut(s)	644, 1076
HphI	GGTGA	5 cut(s)	78, 269, 278, 871, 965
Hpy166II	GTNNAC	2 cut(s)	66, 146
Hpy188I	TCNGA	3 cut(s)	57, 664, 894
Hpy188III	TCNNGA	4 cut(s)	151, 482, 754, 827
Hpy8I	GTNNAC	2 cut(s)	66, 146
HpyAV	CCTTC	3 cut(s)	62, 482, 496
HpyCH4III	ACNGT	3 cut(s)	38, 407, 589
HpyCH4IV	ACGT	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	3 cut(s)	357, 411, 551
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	3 cut(s)	308, 811, 937
Ksp22I	TGATCA	2 cut(s)	756, 889
Kzo9I	GATC	3 cut(s)	659, 756, 889
Lsp1109I	GCAGC	3 cut(s)	160, 229, 232
LweI	GCATC	7 cut(s)	92, 221, 257, 343, 408, 572, 766
MaeI	CTAG	3 cut(s)	98, 300, 767
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	4 cut(s)	100, 452, 544, 799
MalI	GATC	3 cut(s)	661, 758, 891
MboI	GATC	3 cut(s)	659, 756, 889
MboII	GAAGA	6 cut(s)	376, 431, 443, 497, 805, 989
MfeI	CAATTG	1 cut(s)	996
MhlI	GDGCHC	3 cut(s)	394, 899, 1066
MluCI	AATT	4 cut(s)	21, 58, 336, 996
MlyI	GAGTC	2 cut(s)	541, 796
MseI	TTAA	6 cut(s)	527, 744, 786, 864, 902, 1108
MspI	CCGG	2 cut(s)	644, 1076
MspR9I	CCNGG	1 cut(s)	1076
MunI	CAATTG	1 cut(s)	996
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	1076
NdeII	GATC	3 cut(s)	659, 756, 889
NlaIII	CATG	3 cut(s)	308, 811, 937
NlaIV	GGNNCC	5 cut(s)	477, 642, 740, 1064, 1080
NmuCI	GTSAC	2 cut(s)	544, 799
NspI	RCATGY	2 cut(s)	811, 937
PaeI	GCATGC	1 cut(s)	937
PciI	ACATGT	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 1097
PfeI	GAWTC	2 cut(s)	200, 823
PkrI	GCNGC	3 cut(s)	175, 244, 247
PleI	GAGTC	2 cut(s)	541, 796
PpsI	GAGTC	2 cut(s)	541, 796
PpuMI	RGGWCCY	2 cut(s)	476, 739
PscI	ACATGT	1 cut(s)	807
Psp124BI	GAGCTC	1 cut(s)	899
Psp5II	RGGWCCY	2 cut(s)	476, 739
PspN4I	GGNNCC	5 cut(s)	477, 642, 740, 1064, 1080
PspOMI	GGGCCC	1 cut(s)	1062
PspPI	GGNCC	6 cut(s)	272, 476, 739, 1062, 1063, 1078
PspPPI	RGGWCCY	2 cut(s)	476, 739
PstNI	CAGNNNCTG	2 cut(s)	668, 826
RsaI	GTAC	2 cut(s)	289, 298
RsaNI	GTAC	2 cut(s)	288, 297
SacI	GAGCTC	1 cut(s)	899
SaqAI	TTAA	6 cut(s)	527, 744, 786, 864, 902, 1108
SatI	GCNGC	3 cut(s)	174, 243, 246
Sau3AI	GATC	3 cut(s)	659, 756, 889
Sau96I	GGNCC	6 cut(s)	272, 476, 739, 1062, 1063, 1078
SchI	GAGTC	2 cut(s)	541, 796
ScrFI	CCNGG	1 cut(s)	1076
SduI	GDGCHC	3 cut(s)	394, 899, 1066
SfaNI	GCATC	7 cut(s)	92, 221, 257, 343, 408, 572, 766
SfcI	CTRYAG	2 cut(s)	216, 252
SinI	GGWCC	4 cut(s)	272, 476, 739, 1078
SpeI	ACTAGT	2 cut(s)	299, 766
SphI	GCATGC	1 cut(s)	937
Sse9I	AATT	4 cut(s)	21, 58, 336, 996
SsiI	CCGC	2 cut(s)	1046, 1054
SspI	AATATT	1 cut(s)	1039
SspMI	CTAG	3 cut(s)	98, 300, 767
SstI	GAGCTC	1 cut(s)	899
StyD4I	CCNGG	1 cut(s)	1074
TaaI	ACNGT	3 cut(s)	38, 407, 589
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	519, 975
TasI	AATT	4 cut(s)	21, 58, 336, 996
TfiI	GAWTC	2 cut(s)	200, 823
Tru1I	TTAA	6 cut(s)	527, 744, 786, 864, 902, 1108
Tru9I	TTAA	6 cut(s)	527, 744, 786, 864, 902, 1108
TscAI	CASTG	2 cut(s)	592, 921
TseFI	GTSAC	2 cut(s)	544, 799
TseI	GCWGC	3 cut(s)	173, 242, 245
Tsp45I	GTSAC	2 cut(s)	544, 799
TspDTI	ATGAA	5 cut(s)	371, 444, 731, 831, 1002
TspRI	CASTG	2 cut(s)	592, 921
VpaK11BI	GGWCC	4 cut(s)	272, 476, 739, 1078
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	2 cut(s)	811, 937
XspI	CTAG	3 cut(s)	98, 300, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.