RNA pseudourine synthase 3
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 69 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 293 |
| AgsI | TTSAA | 5 cut(s) | 56, 66, 101, 123, 147 |
| AluBI | AGCT | 6 cut(s) | 23, 44, 104, 134, 182, 260 |
| AluI | AGCT | 6 cut(s) | 23, 44, 104, 134, 182, 260 |
| AoxI | GGCC | 1 cut(s) | 29 |
| ApeKI | GCWGC | 1 cut(s) | 23 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 105 |
| AspA2I | CCTAGG | 1 cut(s) | 89 |
| AspS9I | GGNCC | 1 cut(s) | 296 |
| AsuHPI | GGTGA | 1 cut(s) | 69 |
| AvaII | GGWCC | 1 cut(s) | 296 |
| AvrII | CCTAGG | 1 cut(s) | 89 |
| BbsI | GAAGAC | 2 cut(s) | 63, 224 |
| BbvI | GCAGC | 1 cut(s) | 10 |
| BccI | CCATC | 1 cut(s) | 206 |
| BfaI | CTAG | 2 cut(s) | 6, 90 |
| BisI | GCNGC | 1 cut(s) | 24 |
| BlnI | CCTAGG | 1 cut(s) | 89 |
| BlsI | GCNGC | 1 cut(s) | 25 |
| Bme18I | GGWCC | 1 cut(s) | 296 |
| BmgT120I | GGNCC | 1 cut(s) | 296 |
| BmsI | GCATC | 1 cut(s) | 302 |
| BpiI | GAAGAC | 2 cut(s) | 63, 224 |
| BpmI | CTGGAG | 1 cut(s) | 96 |
| BsaJI | CCNNGG | 1 cut(s) | 89 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 293 |
| Bse118I | RCCGGY | 1 cut(s) | 268 |
| BseDI | CCNNGG | 1 cut(s) | 89 |
| BseGI | GGATG | 2 cut(s) | 34, 317 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 293 |
| BseMII | CTCAG | 1 cut(s) | 185 |
| BseXI | GCAGC | 1 cut(s) | 10 |
| BshFI | GGCC | 1 cut(s) | 31 |
| BsiSI | CCGG | 1 cut(s) | 269 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 293 |
| BsnI | GGCC | 1 cut(s) | 31 |
| BspACI | CCGC | 1 cut(s) | 69 |
| BspANI | GGCC | 1 cut(s) | 31 |
| BspCNI | CTCAG | 1 cut(s) | 186 |
| BspQI | GCTCTTC | 1 cut(s) | 111 |
| BsrFI | RCCGGY | 1 cut(s) | 268 |
| BssAI | RCCGGY | 1 cut(s) | 268 |
| BssECI | CCNNGG | 1 cut(s) | 89 |
| BssT1I | CCWWGG | 1 cut(s) | 89 |
| Bst6I | CTCTTC | 2 cut(s) | 67, 111 |
| BstC8I | GCNNGC | 1 cut(s) | 132 |
| BstDEI | CTNAG | 1 cut(s) | 194 |
| BstF5I | GGATG | 2 cut(s) | 34, 317 |
| BstV1I | GCAGC | 1 cut(s) | 10 |
| BstV2I | GAAGAC | 2 cut(s) | 63, 224 |
| BsuRI | GGCC | 1 cut(s) | 31 |
| BtsCI | GGATG | 2 cut(s) | 34, 317 |
| Cac8I | GCNNGC | 1 cut(s) | 132 |
| Cfr10I | RCCGGY | 1 cut(s) | 268 |
| Cfr13I | GGNCC | 1 cut(s) | 296 |
| DdeI | CTNAG | 1 cut(s) | 194 |
| Eam1104I | CTCTTC | 2 cut(s) | 67, 111 |
| EarI | CTCTTC | 2 cut(s) | 67, 111 |
| Eco130I | CCWWGG | 1 cut(s) | 89 |
| Eco47I | GGWCC | 1 cut(s) | 296 |
| EcoT14I | CCWWGG | 1 cut(s) | 89 |
| ErhI | CCWWGG | 1 cut(s) | 89 |
| FaiI | YATR | 1 cut(s) | 302 |
| Fnu4HI | GCNGC | 1 cut(s) | 24 |
| FokI | GGATG | 1 cut(s) | 21 |
| Fsp4HI | GCNGC | 1 cut(s) | 24 |
| FspBI | CTAG | 2 cut(s) | 6, 90 |
| GluI | GCNGC | 1 cut(s) | 24 |
| GsuI | CTGGAG | 1 cut(s) | 96 |
| HaeIII | GGCC | 1 cut(s) | 31 |
| HapII | CCGG | 1 cut(s) | 269 |
| HindIII | AAGCTT | 1 cut(s) | 258 |
| HinfI | GANTC | 1 cut(s) | 59 |
| HpaII | CCGG | 1 cut(s) | 269 |
| HphI | GGTGA | 1 cut(s) | 69 |
| Hpy188III | TCNNGA | 2 cut(s) | 206, 249 |
| HpyAV | CCTTC | 2 cut(s) | 10, 90 |
| HpyCH4V | TGCA | 2 cut(s) | 170, 188 |
| HpyF3I | CTNAG | 1 cut(s) | 194 |
| LguI | GCTCTTC | 1 cut(s) | 111 |
| LmnI | GCTCC | 2 cut(s) | 91, 187 |
| LpnPI | CCDG | 7 cut(s) | 126, 164, 180, 198, 234, 282, 300 |
| Lsp1109I | GCAGC | 1 cut(s) | 10 |
| LweI | GCATC | 1 cut(s) | 302 |
| MaeI | CTAG | 2 cut(s) | 6, 90 |
| MboII | GAAGA | 5 cut(s) | 25, 54, 68, 98, 229 |
| MluCI | AATT | 1 cut(s) | 96 |
| MlyI | GAGTC | 1 cut(s) | 53 |
| MmeI | TCCRAC | 1 cut(s) | 62 |
| MnlI | CCTC | 3 cut(s) | 42, 120, 219 |
| MroXI | GAANNNNTTC | 1 cut(s) | 105 |
| MspI | CCGG | 1 cut(s) | 269 |
| NmeAIII | GCCGAG | 1 cut(s) | 7 |
| PciSI | GCTCTTC | 1 cut(s) | 111 |
| PdmI | GAANNNNTTC | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 25 |
| PleI | GAGTC | 1 cut(s) | 53 |
| PpsI | GAGTC | 1 cut(s) | 53 |
| PspPI | GGNCC | 1 cut(s) | 296 |
| SapI | GCTCTTC | 1 cut(s) | 111 |
| SatI | GCNGC | 1 cut(s) | 24 |
| Sau96I | GGNCC | 1 cut(s) | 296 |
| SchI | GAGTC | 1 cut(s) | 53 |
| SetI | ASST | 8 cut(s) | 21, 25, 46, 82, 106, 136, 184, 262 |
| SfaNI | GCATC | 1 cut(s) | 302 |
| SinI | GGWCC | 1 cut(s) | 296 |
| Sse9I | AATT | 1 cut(s) | 96 |
| SsiI | CCGC | 1 cut(s) | 69 |
| SspMI | CTAG | 2 cut(s) | 6, 90 |
| StyI | CCWWGG | 1 cut(s) | 89 |
| TasI | AATT | 1 cut(s) | 96 |
| TseI | GCWGC | 1 cut(s) | 23 |
| TspDTI | ATGAA | 1 cut(s) | 192 |
| VpaK11BI | GGWCC | 1 cut(s) | 296 |
| XmaJI | CCTAGG | 1 cut(s) | 89 |
| XmnI | GAANNNNTTC | 1 cut(s) | 105 |
| XspI | CTAG | 2 cut(s) | 6, 90 |