Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000266.1

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Reverse (-)

84759 .. 85328

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000266.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgcagatcgaagctggtgaagctgcaagtcaacctggaaatccaactcctgaagttgcaagtcaatctctaggtcaagttgcaagccaacctgcaagcgaagctgctgcatctgtaagtgaagcttcttctgaaaaatctagtataaaatgtagttttgtatgggagcatttcaaagagtatgataaagtagaggttcagaaagatgctgagggaaatgacattaagatagttcataaaagggcacattgcatcttctgtcctaggggaaaagtaggagattttgctgtggataattcgaagaatggaacttctggtatgattaggcacaggtattatccacctaatgtggataaatctcaaaaaaatcatgttggtgataaatttaagggtcataaattgacaacagtggcttatagccaagatgactatttagatgcttgtgttgagatgattgtgatcgatgagctgccttttagttttgtggaaaagaaagggtttaacatattttgtgagaaagtctgccctatatttgatgttccctctagaaggaaactgtgtagaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

189

Amino Acids

20.96

Weight (kDa)

6.59

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	5 cut(s)	14, 23, 104, 125, 469
AluI	AGCT	5 cut(s)	14, 23, 104, 125, 469
ApeKI	GCWGC	4 cut(s)	23, 104, 107, 469
ApoI	RAATTY	1 cut(s)	383
AspA2I	CCTAGG	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	29, 389
AsuII	TTCGAA	1 cut(s)	299
AvrII	CCTAGG	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	4 cut(s)	10, 91, 94, 456
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BciT130I	CCWGG	1 cut(s)	36
BfaI	CTAG	4 cut(s)	71, 141, 264, 546
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	4 cut(s)	24, 105, 108, 470
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	4 cut(s)	25, 106, 109, 471
Bme1390I	CCNGG	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	4 cut(s)	119, 196, 261, 427
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	263
BseJI	GATNNNNATC	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	4 cut(s)	10, 91, 94, 456
BshVI	ATCGAT	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	549
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	6, 459
BspCNI	CTCAG	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	2 cut(s)	6, 459
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	409, 558
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	85, 97
BstDEI	CTNAG	1 cut(s)	210
BstENI	CCTNNNNNAGG	1 cut(s)	547
BstKTI	GATC	2 cut(s)	9, 462
BstMBI	GATC	2 cut(s)	6, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 101
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	4 cut(s)	10, 91, 94, 456
Bsu15I	ATCGAT	1 cut(s)	462
BsuTUI	ATCGAT	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	85, 97
ClaI	ATCGAT	1 cut(s)	462
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	8 cut(s)	14, 23, 87, 104, 125, 413, 420, 469
CviKI_1	RGCY	8 cut(s)	14, 23, 87, 104, 125, 413, 420, 469
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	8, 461
DpnII	GATC	2 cut(s)	6, 459
Eco130I	CCWWGG	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	1 cut(s)	374
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FatI	CATG	1 cut(s)	370
Fnu4HI	GCNGC	4 cut(s)	24, 105, 108, 470
Fsp4HI	GCNGC	4 cut(s)	24, 105, 108, 470
FspBI	CTAG	4 cut(s)	71, 141, 264, 546
GluI	GCNGC	4 cut(s)	24, 105, 108, 470
Hin1II	CATG	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	123
HphI	GGTGA	2 cut(s)	29, 389
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	133, 201
Hpy188III	TCNNGA	2 cut(s)	50, 546
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	543
HpyCH4III	ACNGT	2 cut(s)	409, 558
HpyCH4V	TGCA	7 cut(s)	4, 26, 59, 83, 95, 110, 252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 101
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	6, 459
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	6 cut(s)	21, 48, 63, 105, 300, 316
Lsp1109I	GCAGC	4 cut(s)	10, 91, 94, 456
LweI	GCATC	4 cut(s)	119, 196, 261, 427
MaeI	CTAG	4 cut(s)	71, 141, 264, 546
MalI	GATC	2 cut(s)	8, 461
MboI	GATC	2 cut(s)	6, 459
MboII	GAAGA	3 cut(s)	120, 247, 313
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	3 cut(s)	295, 383, 398
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	3 cut(s)	187, 205, 553
MseI	TTAA	3 cut(s)	225, 387, 501
MslI	CAYNNNNRTG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	20, 101
NdeII	GATC	2 cut(s)	6, 459
NlaIII	CATG	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	25, 106, 109, 471
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	225, 387, 501
SatI	GCNGC	4 cut(s)	24, 105, 108, 470
Sau3AI	GATC	2 cut(s)	6, 459
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	247
SfaNI	GCATC	4 cut(s)	119, 196, 261, 427
SfuI	TTCGAA	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	3 cut(s)	295, 383, 398
SspMI	CTAG	4 cut(s)	71, 141, 264, 546
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	409, 558
TaqI	TCGA	3 cut(s)	9, 299, 462
TasI	AATT	3 cut(s)	295, 383, 398
Tru1I	TTAA	3 cut(s)	225, 387, 501
Tru9I	TTAA	3 cut(s)	225, 387, 501
TscAI	CASTG	1 cut(s)	414
TseI	GCWGC	4 cut(s)	23, 104, 107, 469
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	414
XagI	CCTNNNNNAGG	1 cut(s)	547
XapI	RAATTY	1 cut(s)	383
XbaI	TCTAGA	1 cut(s)	545
XmaJI	CCTAGG	1 cut(s)	263
XspI	CTAG	4 cut(s)	71, 141, 264, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.