Rroxscaffold_3G00228880

Zinc finger BED domain-containing protein RICESLEEPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001143
Physical Location & Seq
Reverse (-)
13303432 .. 13308335
4904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228880.1

Sequence Viewer

Length: 1215 bp
ATGGCTAGGGAGAAGAAAACTGCTCGACCTCGACCAGGTGCTTCTGGTCTTGAGGATTCTTCAACAGCCACATCACCGGCTTCTCCTCCACTGCTCGAAGCTGCAAGCCAACATGAAGTTGTAAGTGAACCTGCTGCAAGTCAACCTTCTAGAAGTGAAGCCGCAACATCTGTAGGTGAGGCTCCTTCTGAAAAATCAGGTATAAAGCGTAGCTTTGTTTGGGACCATTTTAAAGAGTATGCTAAGATTGAACATGCTAAAGATGCTAACGGAAAAGACATTGAGATAGTTCATAAGAGAGCTTATTGCATCTACTGTCCTAGGGGAAAAGTTGGTGATTTTTCTATTGAAAGTTCTAATGGCACTTCTGGTATGATTAGGCACATTAACCAAAAGTGTAGATATTATCCTCCTAATATGGATAAGTCACAGAAAAATCTTGTTGGCGATAAATTTAAGGGCAATAAACTGACCATAGTACCTTATAATCAAGATGATTATTTAGAAGCTTGTGTAGAGATGATTGTCATTGATGAGCTGCCTTTTAGTTTTGTGGAGAAGATAGGCTTTAACAGATTTTGTATAAAAGTCTGTCCTCTTTTTGATGTTCCCTCTAGAAGGAAATTGTGTAGGATCTTTCGAAGTATGTATGATACTTCAAAGAAGGATTTGAAGAAGACTTTGAGGAAGTATAGGTTGAGTCTAACCACCGATACTTGGACTAGTGTTCAAAATGTCAATTACATGGTGCTTATTGCCCATTTTATTGACATAGATTGGAAAATGCACAAGAGGGTCATTAATTTCTGTGTGATTCAAAATCATCAAGGGGCAACAATAGGGAAGCTTATTGAGTCATGTTTAGTGCAGTGGGGAATTGAGAAAGTCATGTGCATTACAGTTGATAATGCCTCTGCAAACAAGTCTGCTTTAGAGTGGCTTGTGTCGAGAATGAACAAGTCTACATCGTATGAGCAGATTTTGAGTGGCAAATACATGCATGTGAGATGCACTGCTCACATCACTAACTTAATAGTGGGGCATGGCTTAAAGAGGTTGCAAAAGTCTGTTTTAGCAATTAGGAATGCAGTGAAGTTTGTGAGATCTTCTCCAAAACGATTGGATTTTTTAAGAAGACTGTGGAGAGAGAGAAAATTCCTTGTAAGGGACTTGTGTGTTTGGATGTCCCAACTAGGTGGAACAGCACCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

404

Amino Acids

45.96

Weight (kDa)

9.59

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
Acc36I ACCTGC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 962
AciI CCGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 641
AcsI RAATTY 2 cut(s) 452, 1154
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 4 cut(s) 35, 618, 717, 1165
AgsI TTSAA 7 cut(s) 63, 251, 350, 660, 673, 731, 818
AhlI ACTAGT 1 cut(s) 722
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 6 cut(s) 101, 213, 302, 509, 538, 847
AluI AGCT 6 cut(s) 101, 213, 302, 509, 538, 847
AlwI GGATC 1 cut(s) 641
ApeKI GCWGC 3 cut(s) 101, 134, 538
ApoI RAATTY 2 cut(s) 452, 1154
AseI ATTAAT 1 cut(s) 801
AspA2I CCTAGG 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 66, 188, 347
AsuII TTCGAA 1 cut(s) 640
AvaII GGWCC 1 cut(s) 223
AvrII CCTAGG 1 cut(s) 320
BaeI ACNNNNGTAYC 2 cut(s) 462, 495
BbsI GAAGAC 2 cut(s) 683, 1141
BbvI GCAGC 3 cut(s) 88, 121, 525
BciT130I CCWGG 1 cut(s) 36
BcuI ACTAGT 1 cut(s) 722
BfaI CTAG 6 cut(s) 6, 150, 321, 615, 723, 1193
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 139
BglII AGATCT 1 cut(s) 1103
BisI GCNGC 4 cut(s) 102, 135, 162, 539
BlnI CCTAGG 1 cut(s) 320
BlsI GCNGC 4 cut(s) 103, 136, 163, 540
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 183, 224
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 3 cut(s) 253, 318, 998
BpiI GAAGAC 2 cut(s) 683, 1141
BplI GAGNNNNNCTC 2 cut(s) 1093, 1125
Bpu14I TTCGAA 1 cut(s) 640
BpuEI CTTGAG 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 320
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 618, 717, 1165
Bse118I RCCGGY 1 cut(s) 76
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 1188
BseLI CCNNNNNNNGG 4 cut(s) 35, 618, 717, 1165
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 88, 121, 525
BsgI GTGCAG 1 cut(s) 887
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 3 cut(s) 236, 1171, 1181
BslI CCNNNNNNNGG 4 cut(s) 35, 618, 717, 1165
BsmFI GGGAC 3 cut(s) 236, 1171, 1181
BsmI GAATGC 1 cut(s) 1090
Bsp119I TTCGAA 1 cut(s) 640
Bsp143I GATC 2 cut(s) 633, 1103
BspACI CCGC 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 183, 224
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 1 cut(s) 641
BspT104I TTCGAA 1 cut(s) 640
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 2 cut(s) 633, 1103
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 3 cut(s) 317, 901, 1140
BstBI TTCGAA 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 243
BstENI CCTNNNNNAGG 2 cut(s) 33, 616
BstF5I GGATG 1 cut(s) 1188
BstKTI GATC 2 cut(s) 636, 1106
BstMBI GATC 2 cut(s) 633, 1103
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 36
BstNSI RCATGY 3 cut(s) 257, 1000, 1004
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 88, 121, 525
BstV2I GAAGAC 2 cut(s) 683, 1141
BstX2I RGATCY 2 cut(s) 633, 1103
BstXI CCANNNNNNTGG 1 cut(s) 1196
BstYI RGATCY 2 cut(s) 633, 1103
BtsCI GGATG 1 cut(s) 1188
BtsI GCAGTG 4 cut(s) 89, 875, 1011, 1095
BtsIMutI CAGTG 4 cut(s) 89, 875, 1011, 1095
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 223
CsiI ACCWGGT 1 cut(s) 34
Csp6I GTAC 1 cut(s) 479
CviAII CATG 8 cut(s) 113, 254, 745, 858, 889, 997, 1001, 1043
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 635, 1105
DpnII GATC 2 cut(s) 633, 1103
DraI TTTAAA 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 223
EcoNI CCTNNNNNAGG 2 cut(s) 33, 616
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 320
EcoT22I ATGCAT 1 cut(s) 1002
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 8 cut(s) 116, 257, 748, 861, 892, 1000, 1004, 1046
FalI AAGNNNNNCTT 6 cut(s) 130, 162, 197, 229, 551, 583
FaqI GGGAC 3 cut(s) 236, 1171, 1181
FatI CATG 8 cut(s) 112, 253, 744, 857, 888, 996, 1000, 1042
FblI GTMKAC 1 cut(s) 962
Fnu4HI GCNGC 4 cut(s) 102, 135, 162, 539
FokI GGATG 1 cut(s) 1195
Fsp4HI GCNGC 4 cut(s) 102, 135, 162, 539
FspBI CTAG 6 cut(s) 6, 150, 321, 615, 723, 1193
GluI GCNGC 4 cut(s) 102, 135, 162, 539
HapII CCGG 1 cut(s) 77
Hin1II CATG 8 cut(s) 116, 257, 748, 861, 892, 1000, 1004, 1046
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HindIII AAGCTT 2 cut(s) 507, 845
HinfI GANTC 4 cut(s) 56, 700, 814, 854
HpaII CCGG 1 cut(s) 77
HphI GGTGA 3 cut(s) 66, 188, 347
Hpy166II GTNNAC 3 cut(s) 128, 143, 963
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 5 cut(s) 50, 150, 491, 615, 948
Hpy8I GTNNAC 3 cut(s) 128, 143, 963
HpyAV CCTTC 4 cut(s) 156, 195, 612, 658
HpyCH4III ACNGT 3 cut(s) 317, 901, 1140
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 8 cut(s) 116, 257, 748, 861, 892, 1000, 1004, 1046
Kzo9I GATC 2 cut(s) 633, 1103
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 21, 30, 48, 90, 144, 183, 354
Lsp1109I GCAGC 3 cut(s) 88, 121, 525
LweI GCATC 3 cut(s) 253, 318, 998
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 6 cut(s) 6, 150, 321, 615, 723, 1193
MaeIII GTNAC 1 cut(s) 426
MalI GATC 2 cut(s) 635, 1105
MboI GATC 2 cut(s) 633, 1103
MboII GAAGA 7 cut(s) 25, 51, 571, 685, 688, 1098, 1146
MflI RGATCY 2 cut(s) 633, 1103
MluCI AATT 7 cut(s) 452, 623, 739, 802, 876, 1077, 1154
MlyI GAGTC 2 cut(s) 709, 863
Mph1103I ATGCAT 1 cut(s) 1002
MseI TTAA 8 cut(s) 231, 387, 456, 570, 801, 1031, 1049, 1130
MslI CAYNNNNRTG 1 cut(s) 1001
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 1090
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 2 cut(s) 633, 1103
NlaIII CATG 8 cut(s) 116, 257, 748, 861, 892, 1000, 1004, 1046
NlaIV GGNNCC 2 cut(s) 183, 224
NmuCI GTSAC 1 cut(s) 426
NsiI ATGCAT 1 cut(s) 1002
NspI RCATGY 3 cut(s) 257, 1000, 1004
NspV TTCGAA 1 cut(s) 640
PctI GAATGC 1 cut(s) 1090
PfeI GAWTC 2 cut(s) 56, 814
PkrI GCNGC 4 cut(s) 103, 136, 163, 540
PleI GAGTC 2 cut(s) 708, 862
PpsI GAGTC 2 cut(s) 708, 862
PshBI ATTAAT 1 cut(s) 801
PsiI TTATAA 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 183, 224
PspPI GGNCC 1 cut(s) 223
PsuI RGATCY 2 cut(s) 633, 1103
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
RseI CAYNNNNRTG 1 cut(s) 1001
SaqAI TTAA 8 cut(s) 231, 387, 456, 570, 801, 1031, 1049, 1130
SatI GCNGC 4 cut(s) 102, 135, 162, 539
Sau3AI GATC 2 cut(s) 633, 1103
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 2 cut(s) 709, 863
ScrFI CCNGG 1 cut(s) 36
SexAI ACCWGGT 1 cut(s) 34
SfaNI GCATC 3 cut(s) 253, 318, 998
SfcI CTRYAG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 640
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 1001
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 722
Sse9I AATT 7 cut(s) 452, 623, 739, 802, 876, 1077, 1154
SsiI CCGC 1 cut(s) 162
SspMI CTAG 6 cut(s) 6, 150, 321, 615, 723, 1193
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 3 cut(s) 317, 901, 1140
TaqI TCGA 5 cut(s) 25, 31, 96, 640, 947
TasI AATT 7 cut(s) 452, 623, 739, 802, 876, 1077, 1154
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 56, 814
Tru1I TTAA 8 cut(s) 231, 387, 456, 570, 801, 1031, 1049, 1130
Tru9I TTAA 8 cut(s) 231, 387, 456, 570, 801, 1031, 1049, 1130
TscAI CASTG 4 cut(s) 96, 875, 1018, 1095
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 3 cut(s) 101, 134, 538
Tsp45I GTSAC 1 cut(s) 426
TspDTI ATGAA 3 cut(s) 129, 281, 968
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 4 cut(s) 96, 875, 1018, 1095
VpaK11BI GGWCC 1 cut(s) 223
VspI ATTAAT 1 cut(s) 801
XagI CCTNNNNNAGG 2 cut(s) 33, 616
XapI RAATTY 2 cut(s) 452, 1154
XbaI TCTAGA 2 cut(s) 149, 614
XceI RCATGY 3 cut(s) 257, 1000, 1004
XmaJI CCTAGG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 962
XspI CTAG 6 cut(s) 6, 150, 321, 615, 723, 1193
Zsp2I ATGCAT 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.