Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Reverse (-)

9619490 .. 9622529

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g15421.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGAGAGGAAAGAAAGTAATTGTGCAACCCAACCGTTCTACTTCTGGCCTTCAACATTCATCAACGGCGACATCAATAACAACACCATCTCCTCCAGTTACAGCAGGCCCTCTGCTCGAAGCTACAAACCCAAGTTCAAGTCAGCCTCCTTCAAGTGAACCCAGGATTGAAGTTGGTCAAGTTGCTGCATCTGTAGGCGAGGGTGGTGTGGCTTCTGCTGCTGGATCTGTAGGTAATGATGGTGATGGTCCTGCTCAATCAGGTACGAAACGTACTAGTCATGTTTGGAAGCATTTCAAAGAGTATGAGAAAATTGAGAGAGTGAAAGATGCTAAGGGGAAGATAATTGAGGTAGTTTATAAAAGGGCTCATTGCATCTACTGTCCTAAGGGTAAGATTGGGGACTTTTCTGTTGAGAGTAAGAGTGGCACCTCTGGATTGCTTAGGCACATCAACCAAAAGTGTAGAGTTTTTTGGGAAGTGACTCTAAGGAATAGTGCATCATTGCACCCTACTGTGCACACTGTTTTTGCTGATGTGATTGATATGGAAAACAACATAAATAGCTTGTTTGTGGCGCCGGAGATGGCAACTAGATCAGAAACTGAAAAGACATTGCAAGATATGGCAGACAATATAAGAAGCAGATGGATGAAGTATTTTGACTCTTTTGGGGACCTTAACAACATATTGATCATTGGACTAGTTTTAGATGCAAGATTTAAGTTGAAGAATGTGACTCACATGTATACGGAACAGAATCTGCATGTTGATGAGGTGGAGAGGAGAACAAAGGTGATTAAAGACCTGCTTATGGCTCTCTATGATCAGGTAATATTGGGGCGAGATAGCGGGATTAGGCCCGTCCCGTCCCGGTCCCGTTTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

298

Amino Acids

32.66

Weight (kDa)

9.26

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	168 - 276	5.8e-09	hAT-like transposase, RNase-H fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
Acc36I	ACCTGC	1 cut(s)	819
AccB1I	GGYRCC	2 cut(s)	431, 580
AccI	GTMKAC	1 cut(s)	752
AciI	CCGC	1 cut(s)	855
AclWI	GGATC	1 cut(s)	235
AcyI	GRCGYC	1 cut(s)	581
AfaI	GTAC	2 cut(s)	268, 277
AfiI	CCNNNNNNNGG	1 cut(s)	817
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	6 cut(s)	56, 141, 156, 173, 301, 733
AhlI	ACTAGT	2 cut(s)	278, 706
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	125, 570
AluI	AGCT	2 cut(s)	125, 570
Alw21I	GWGCWC	1 cut(s)	525
Alw44I	GTGCAC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	2 cut(s)	608, 766
AoxI	GGCC	3 cut(s)	49, 109, 863
ApaLI	GTGCAC	1 cut(s)	521
ApeKI	GCWGC	2 cut(s)	188, 221
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	5 cut(s)	110, 251, 679, 864, 879
AsuC2I	CCSGG	1 cut(s)	877
AsuHPI	GGTGA	2 cut(s)	257, 811
AvaII	GGWCC	3 cut(s)	251, 679, 879
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	2 cut(s)	431, 580
BanII	GRGCYC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	175, 208
BccI	CCATC	5 cut(s)	97, 236, 242, 583, 645
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	2 cut(s)	696, 829
BcnI	CCSGG	1 cut(s)	877
BcuI	ACTAGT	2 cut(s)	278, 706
BfaI	CTAG	3 cut(s)	279, 597, 707
BfmI	CTRYAG	2 cut(s)	195, 231
BfoI	RGCGCY	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	819
BisI	GCNGC	2 cut(s)	189, 222
BlsI	GCNGC	2 cut(s)	190, 223
Bme1390I	CCNGG	2 cut(s)	166, 877
Bme18I	GGWCC	3 cut(s)	251, 679, 879
BmgT120I	GGNCC	5 cut(s)	110, 251, 679, 864, 879
BmiI	GGNNCC	4 cut(s)	433, 582, 680, 881
BmrFI	CCNGG	2 cut(s)	166, 877
BmsI	GCATC	5 cut(s)	200, 322, 387, 512, 706
BpmI	CTGGAG	1 cut(s)	81
Bpu10I	CCTNAGC	2 cut(s)	336, 446
BpuMI	CCSGG	1 cut(s)	877
BsaHI	GRCGYC	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse1I	ACTGG	1 cut(s)	98
Bse21I	CCTNAGG	1 cut(s)	390
Bse3DI	GCAATG	3 cut(s)	373, 506, 617
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	660
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMI	GCAATG	3 cut(s)	373, 506, 617
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	2 cut(s)	84, 802
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	175, 208
BshFI	GGCC	3 cut(s)	51, 111, 865
BshNI	GGYRCC	2 cut(s)	431, 580
BsiHKAI	GWGCWC	1 cut(s)	525
BsiSI	CCGG	2 cut(s)	584, 877
BslFI	GGGAC	5 cut(s)	419, 692, 854, 859, 865
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmFI	GGGAC	5 cut(s)	419, 692, 854, 859, 865
BsnI	GGCC	3 cut(s)	51, 111, 865
Bsp1286I	GDGCHC	2 cut(s)	373, 525
Bsp143I	GATC	4 cut(s)	227, 599, 696, 829
BspACI	CCGC	1 cut(s)	855
BspANI	GGCC	3 cut(s)	51, 111, 865
BspLI	GGNNCC	4 cut(s)	433, 582, 680, 881
BspMI	ACCTGC	1 cut(s)	819
BspPI	GGATC	1 cut(s)	235
BspT107I	GGYRCC	2 cut(s)	431, 580
BsrDI	GCAATG	3 cut(s)	373, 506, 617
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	4 cut(s)	227, 599, 696, 829
BssNAI	GTATAC	1 cut(s)	753
BssNI	GRCGYC	1 cut(s)	581
Bst1107I	GTATAC	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	4 cut(s)	38, 386, 520, 529
BstACI	GRCGYC	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	4 cut(s)	336, 390, 446, 491
BstF5I	GGATG	1 cut(s)	660
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	4 cut(s)	230, 602, 699, 832
BstMBI	GATC	4 cut(s)	227, 599, 696, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	2 cut(s)	751, 773
BstSCI	CCNGG	2 cut(s)	164, 875
BstSFI	CTRYAG	2 cut(s)	195, 231
BstSLI	GKGCMC	1 cut(s)	525
BstV1I	GCAGC	2 cut(s)	175, 208
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BstZ17I	GTATAC	1 cut(s)	753
Bsu36I	CCTNAGG	1 cut(s)	390
BsuRI	GGCC	3 cut(s)	51, 111, 865
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	819
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	2 cut(s)	608, 766
CfoI	GCGC	1 cut(s)	583
Cfr13I	GGNCC	5 cut(s)	110, 251, 679, 864, 879
Csp6I	GTAC	2 cut(s)	267, 276
CviAII	CATG	3 cut(s)	284, 748, 770
CviJI	RGCY	9 cut(s)	51, 111, 125, 148, 215, 371, 570, 821, 865
CviKI_1	RGCY	9 cut(s)	51, 111, 125, 148, 215, 371, 570, 821, 865
CviQI	GTAC	2 cut(s)	267, 276
DdeI	CTNAG	4 cut(s)	336, 390, 446, 491
DinI	GGCGCC	1 cut(s)	582
DpnI	GATC	4 cut(s)	229, 601, 698, 831
DpnII	GATC	4 cut(s)	227, 599, 696, 829
Eco24I	GRGCYC	1 cut(s)	373
Eco47I	GGWCC	3 cut(s)	251, 679, 879
Eco81I	CCTNAGG	1 cut(s)	390
EcoO109I	RGGNCCY	2 cut(s)	110, 679
EcoRII	CCWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	373
EgeI	GGCGCC	1 cut(s)	582
EheI	GGCGCC	1 cut(s)	582
FaeI	CATG	3 cut(s)	287, 751, 773
FalI	AAGNNNNNCTT	2 cut(s)	798, 830
FaqI	GGGAC	5 cut(s)	419, 692, 854, 859, 865
FatI	CATG	3 cut(s)	283, 747, 769
FauI	CCCGC	1 cut(s)	848
FbaI	TGATCA	2 cut(s)	696, 829
FblI	GTMKAC	1 cut(s)	752
Fnu4HI	GCNGC	2 cut(s)	189, 222
FokI	GGATG	1 cut(s)	667
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	2 cut(s)	189, 222
FspBI	CTAG	3 cut(s)	279, 597, 707
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	2 cut(s)	189, 222
GsuI	CTGGAG	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	584
HaeIII	GGCC	3 cut(s)	51, 111, 865
HapII	CCGG	2 cut(s)	584, 877
HhaI	GCGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	3 cut(s)	287, 751, 773
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	4 cut(s)	487, 668, 742, 763
HpaII	CCGG	2 cut(s)	584, 877
HphI	GGTGA	2 cut(s)	257, 811
Hpy166II	GTNNAC	3 cut(s)	161, 523, 753
Hpy188I	TCNGA	1 cut(s)	604
Hpy188III	TCNNGA	1 cut(s)	438
Hpy8I	GTNNAC	3 cut(s)	161, 523, 753
HpyAV	CCTTC	2 cut(s)	62, 162
HpyCH4III	ACNGT	4 cut(s)	38, 386, 520, 529
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	9 cut(s)	28, 191, 378, 503, 511, 523, 622, 719, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	4 cut(s)	336, 390, 446, 491
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	3 cut(s)	287, 751, 773
HspAI	GCGC	1 cut(s)	581
KasI	GGCGCC	1 cut(s)	580
Ksp22I	TGATCA	2 cut(s)	696, 829
Kzo9I	GATC	4 cut(s)	227, 599, 696, 829
Lsp1109I	GCAGC	2 cut(s)	175, 208
LweI	GCATC	5 cut(s)	200, 322, 387, 512, 706
MaeI	CTAG	3 cut(s)	279, 597, 707
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	3 cut(s)	100, 484, 739
MalI	GATC	4 cut(s)	229, 601, 698, 831
MboI	GATC	4 cut(s)	227, 599, 696, 829
MboII	GAAGA	2 cut(s)	355, 745
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	2 cut(s)	373, 525
MluCI	AATT	3 cut(s)	21, 315, 348
Mly113I	GGCGCC	1 cut(s)	581
MlyI	GAGTC	3 cut(s)	481, 662, 736
MnlI	CCTC	8 cut(s)	105, 123, 159, 196, 346, 445, 772, 780
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	3 cut(s)	684, 726, 804
MslI	CAYNNNNRTG	1 cut(s)	774
MspI	CCGG	2 cut(s)	584, 877
MspR9I	CCNGG	2 cut(s)	166, 877
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	221
NarI	GGCGCC	1 cut(s)	581
NciI	CCSGG	1 cut(s)	877
NdeII	GATC	4 cut(s)	227, 599, 696, 829
NlaIII	CATG	3 cut(s)	287, 751, 773
NlaIV	GGNNCC	4 cut(s)	433, 582, 680, 881
NmuCI	GTSAC	2 cut(s)	484, 739
NspI	RCATGY	2 cut(s)	751, 773
PciI	ACATGT	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	763
PkrI	GCNGC	2 cut(s)	190, 223
PleI	GAGTC	3 cut(s)	481, 662, 736
PluTI	GGCGCC	1 cut(s)	584
PpsI	GAGTC	3 cut(s)	481, 662, 736
PpuMI	RGGWCCY	1 cut(s)	679
PscI	ACATGT	1 cut(s)	747
PsiI	TTATAA	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	4 cut(s)	433, 582, 680, 881
PspPI	GGNCC	5 cut(s)	110, 251, 679, 864, 879
PspPPI	RGGWCCY	1 cut(s)	679
PstNI	CAGNNNCTG	2 cut(s)	608, 766
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	2 cut(s)	268, 277
RsaNI	GTAC	2 cut(s)	267, 276
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	3 cut(s)	684, 726, 804
SatI	GCNGC	2 cut(s)	189, 222
Sau3AI	GATC	4 cut(s)	227, 599, 696, 829
Sau96I	GGNCC	5 cut(s)	110, 251, 679, 864, 879
SchI	GAGTC	3 cut(s)	481, 662, 736
ScrFI	CCNGG	2 cut(s)	166, 877
SduI	GDGCHC	2 cut(s)	373, 525
SfaNI	GCATC	5 cut(s)	200, 322, 387, 512, 706
SfcI	CTRYAG	2 cut(s)	195, 231
SfoI	GGCGCC	1 cut(s)	582
SinI	GGWCC	3 cut(s)	251, 679, 879
SmiMI	CAYNNNNRTG	1 cut(s)	774
SpeI	ACTAGT	2 cut(s)	278, 706
Sse9I	AATT	3 cut(s)	21, 315, 348
SsiI	CCGC	1 cut(s)	855
SspDI	GGCGCC	1 cut(s)	580
SspI	AATATT	1 cut(s)	840
SspMI	CTAG	3 cut(s)	279, 597, 707
StyD4I	CCNGG	2 cut(s)	164, 875
TaaI	ACNGT	4 cut(s)	38, 386, 520, 529
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	21, 315, 348
TfiI	GAWTC	1 cut(s)	763
Tru1I	TTAA	3 cut(s)	684, 726, 804
Tru9I	TTAA	3 cut(s)	684, 726, 804
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	2 cut(s)	484, 739
TseI	GCWGC	2 cut(s)	188, 221
Tsp45I	GTSAC	2 cut(s)	484, 739
TspDTI	ATGAA	2 cut(s)	51, 671
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	1 cut(s)	532
VneI	GTGCAC	1 cut(s)	521
VpaK11BI	GGWCC	3 cut(s)	251, 679, 879
XceI	RCATGY	2 cut(s)	751, 773
XmiI	GTMKAC	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	3 cut(s)	279, 597, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.