FvH4_1g22411

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001143
Physical Location & Seq
Reverse (-)
14318311 .. 14321352
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22411.t1

Sequence Viewer

Length: 1296 bp
ATGGCGAGAGGAAAGAAAGTAATTGTGCGACCCAACCTTTCTGCTTCTGGCCTTCAGAATTCGTCAACGGCGACATCAGTAGCATCACCATCTCCTCCAGTTACATCAGTCCCTCTGCTCAAAGCTACAAACCGGGTTCACTACCCAAGTTCAAGTGAACCCGGGATTGAAGTTGGTCAAGTTGCTGCATCTATAGGCGAGGGTGGTGTGGCTTCTGCTACTGCATCTGTAGGCGAGGGTGGTGTGGCTTCTGCTGCTGCATCTGTAGGTGAGGATGGTGATGGTCCTGCTCAATCAGGTACGAAACGTACTAGTCATGTTTGGGAGTATTTCAAAGAGTATGAGAAAATTGAGAGAGTGAAAGATGCTGAGGGGAAGATAGTTGAGATAGTTCATAAAAGGGCTCATTGCATCTACTGTCCTAAGGGTAAGATTGGGGACTTTTCTGTTGAGAATAAGAGTGGCACCTCTGGATTGCTTAGGCACATCAACCATAACGAGGAAGAATATGATGAAGATGGAGTTCTTTTACCAAGCAACAATAAGAGAGCAAGGGTGGGACCTCCAGAAGAAGGAGATTGGTTGAAGGCTGGTGTGTTTGTCGATATGTTAAGAGTTTTTTGGGAAGTGACTCTAAGAAACAGTGCATCATTGCACCCTACTGTGCACACTGTTTTTGCTGATGTGATTGATATGGAAAACAACATAAATAACTTGTTTGTGGCGCCGGAGATGGCAACTGGATCAGAAACTAAAAAGACATTGCAAGATATGGCAGGCAATATGAGAAGCAGATGGATGAAGTATTTTGGCTCTTTTGGGGACCTTAACAACATATTGATCATTGGACTAGTTTTGGATGCAAGATTTAAGTTGAAGAATGTGACTCACATGTATAATGAACAGAATCTGGATGTTGATGAGGTGGAGAGGAGAACAAAGGTGATTAAAGACTTGCTTATGGCTCTCTATGATCAGGTTATTGATTGTTTTAGGAGCTCATTAACTCCTAAATCAGTGGAGGGACTCATTTGCATGCAAAACTGGATGTTAGGTGATGATATTGCAGAGGTTGTCGAAGATATTGATGAACCAACAATTGAAAACACAGAGTTTTATTACGATGTTGAGCGAGAGCATGAGAGCACTGCTTCAAGCAAGAACAATTGTCCACCTCCAACTGCAAAAGTGAAAGGGAAAGGGAAGTCTGTTGCAACCGGTAATATTGGGACGGGATGGCGGGATTGGGCCCGTCCCGTCCCGGTCCCGTCTGGGACGGGACTTGCGTGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

432

Amino Acids

47.07

Weight (kDa)

5.44

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
hAT-like_RNase-H PF14372 216 - 324 7.6e-10 hAT-like transposase, RNase-H fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 464, 724
AciI CCGC 1 cut(s) 1240
AclWI GGATC 1 cut(s) 751
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 725
AfaI GTAC 2 cut(s) 301, 310
AfiI CCNNNNNNNGG 2 cut(s) 499, 572
AflIII ACRYGT 1 cut(s) 891
AgeI ACCGGT 1 cut(s) 1217
AgsI TTSAA 7 cut(s) 153, 170, 334, 586, 877, 1103, 1155
AhlI ACTAGT 2 cut(s) 311, 850
AluBI AGCT 2 cut(s) 125, 999
AluI AGCT 2 cut(s) 125, 999
Alw21I GWGCWC 3 cut(s) 669, 1001, 1148
Alw44I GTGCAC 1 cut(s) 665
AlwI GGATC 1 cut(s) 751
AlwNI CAGNNNCTG 1 cut(s) 910
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 2 cut(s) 49, 1248
ApaI GGGCCC 1 cut(s) 1252
ApaLI GTGCAC 1 cut(s) 665
ApeKI GCWGC 3 cut(s) 185, 254, 257
ApoI RAATTY 1 cut(s) 58
AsiGI ACCGGT 1 cut(s) 1217
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 6 cut(s) 284, 560, 823, 1248, 1249, 1264
AsuC2I CCSGG 4 cut(s) 134, 162, 163, 1262
AsuHPI GGTGA 5 cut(s) 78, 281, 290, 955, 1067
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 4 cut(s) 284, 560, 823, 1264
AxyI CCTNAGG 1 cut(s) 423
BaeGI GKGCMC 2 cut(s) 669, 1252
BanI GGYRCC 2 cut(s) 464, 724
BanII GRGCYC 3 cut(s) 406, 1001, 1252
Bbv12I GWGCWC 3 cut(s) 669, 1001, 1148
BbvCI CCTCAGC 1 cut(s) 369
BbvI GCAGC 3 cut(s) 172, 241, 244
BccI CCATC 7 cut(s) 97, 269, 275, 512, 727, 789, 1230
BceAI ACGGC 1 cut(s) 84
BclI TGATCA 2 cut(s) 840, 973
BcnI CCSGG 4 cut(s) 134, 162, 163, 1262
BcuI ACTAGT 2 cut(s) 311, 850
BfaI CTAG 2 cut(s) 312, 851
BfmI CTRYAG 3 cut(s) 192, 228, 264
BfoI RGCGCY 1 cut(s) 728
BisI GCNGC 3 cut(s) 186, 255, 258
BlsI GCNGC 3 cut(s) 187, 256, 259
Bme1390I CCNGG 4 cut(s) 134, 162, 163, 1262
Bme18I GGWCC 4 cut(s) 284, 560, 823, 1264
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 6 cut(s) 284, 560, 823, 1248, 1249, 1264
BmiI GGNNCC 6 cut(s) 466, 561, 726, 824, 1250, 1266
BmrFI CCNGG 4 cut(s) 134, 162, 163, 1262
BmsI GCATC 8 cut(s) 92, 197, 233, 269, 355, 420, 656, 850
BpmI CTGGAG 2 cut(s) 81, 549
Bpu10I CCTNAGC 2 cut(s) 369, 479
BpuMI CCSGG 4 cut(s) 134, 162, 163, 1262
BsaHI GRCGYC 1 cut(s) 725
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 1217
Bsc4I CCNNNNNNNGG 2 cut(s) 499, 572
Bse118I RCCGGY 1 cut(s) 1217
Bse1I ACTGG 3 cut(s) 98, 745, 1049
Bse21I CCTNAGG 1 cut(s) 423
Bse3DI GCAATG 3 cut(s) 406, 650, 761
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 6 cut(s) 280, 804, 865, 919, 1053, 1241
BseLI CCNNNNNNNGG 2 cut(s) 499, 572
BseMI GCAATG 3 cut(s) 406, 650, 761
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 3 cut(s) 98, 745, 1049
BseRI GAGGAG 2 cut(s) 84, 946
BseSI GKGCMC 2 cut(s) 669, 1252
BseXI GCAGC 3 cut(s) 172, 241, 244
BshFI GGCC 2 cut(s) 51, 1250
BshNI GGYRCC 2 cut(s) 464, 724
BshTI ACCGGT 1 cut(s) 1217
BsiHKAI GWGCWC 3 cut(s) 669, 1001, 1148
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 5 cut(s) 133, 162, 728, 1218, 1262
BslI CCNNNNNNNGG 2 cut(s) 499, 572
BsnI GGCC 2 cut(s) 51, 1250
BsoBI CYCGRG 1 cut(s) 161
Bsp120I GGGCCC 1 cut(s) 1248
Bsp1286I GDGCHC 5 cut(s) 406, 669, 1001, 1148, 1252
Bsp143I GATC 3 cut(s) 743, 840, 973
BspACI CCGC 1 cut(s) 1240
BspANI GGCC 2 cut(s) 51, 1250
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 6 cut(s) 466, 561, 726, 824, 1250, 1266
BspPI GGATC 1 cut(s) 751
BspT107I GGYRCC 2 cut(s) 464, 724
BsrDI GCAATG 3 cut(s) 406, 650, 761
BsrFI RCCGGY 1 cut(s) 1217
BsrI ACTGG 3 cut(s) 98, 745, 1049
BssAI RCCGGY 1 cut(s) 1217
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 743, 840, 973
BssNI GRCGYC 1 cut(s) 725
Bst4CI ACNGT 4 cut(s) 419, 644, 664, 673
BstACI GRCGYC 1 cut(s) 725
BstC8I GCNNGC 2 cut(s) 778, 1037
BstDEI CTNAG 4 cut(s) 369, 423, 479, 635
BstF5I GGATG 6 cut(s) 280, 804, 865, 919, 1053, 1241
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 3 cut(s) 746, 843, 976
BstMBI GATC 3 cut(s) 743, 840, 973
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNSI RCATGY 2 cut(s) 895, 1039
BstSCI CCNGG 4 cut(s) 132, 160, 161, 1260
BstSFI CTRYAG 3 cut(s) 192, 228, 264
BstSLI GKGCMC 2 cut(s) 669, 1252
BstV1I GCAGC 3 cut(s) 172, 241, 244
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 2 cut(s) 51, 1250
BtsCI GGATG 6 cut(s) 280, 804, 865, 919, 1053, 1241
BtsI GCAGTG 1 cut(s) 1146
BtsIMutI CAGTG 4 cut(s) 649, 669, 1023, 1146
Cac8I GCNNGC 2 cut(s) 778, 1037
CaiI CAGNNNCTG 1 cut(s) 910
CfoI GCGC 1 cut(s) 727
Cfr10I RCCGGY 1 cut(s) 1217
Cfr13I GGNCC 6 cut(s) 284, 560, 823, 1248, 1249, 1264
Cfr9I CCCGGG 1 cut(s) 161
Csp6I GTAC 2 cut(s) 300, 309
CspAI ACCGGT 1 cut(s) 1217
CviAII CATG 4 cut(s) 317, 892, 1036, 1139
CviQI GTAC 2 cut(s) 300, 309
DdeI CTNAG 4 cut(s) 369, 423, 479, 635
DinI GGCGCC 1 cut(s) 726
DpnI GATC 3 cut(s) 745, 842, 975
DpnII GATC 3 cut(s) 743, 840, 973
Ecl136II GAGCTC 1 cut(s) 999
Eco24I GRGCYC 3 cut(s) 406, 1001, 1252
Eco47I GGWCC 4 cut(s) 284, 560, 823, 1264
Eco53kI GAGCTC 1 cut(s) 999
Eco57I CTGAAG 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 999
EcoO109I RGGNCCY 2 cut(s) 560, 823
EcoRI GAATTC 1 cut(s) 58
EcoT38I GRGCYC 3 cut(s) 406, 1001, 1252
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
FaeI CATG 4 cut(s) 320, 895, 1039, 1142
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FatI CATG 4 cut(s) 316, 891, 1035, 1138
FauI CCCGC 1 cut(s) 1233
FbaI TGATCA 2 cut(s) 840, 973
Fnu4HI GCNGC 3 cut(s) 186, 255, 258
FokI GGATG 6 cut(s) 287, 811, 872, 926, 1060, 1248
FriOI GRGCYC 3 cut(s) 406, 1001, 1252
Fsp4HI GCNGC 3 cut(s) 186, 255, 258
FspBI CTAG 2 cut(s) 312, 851
GlaI GCGC 1 cut(s) 726
GluI GCNGC 3 cut(s) 186, 255, 258
GsuI CTGGAG 2 cut(s) 81, 549
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 2 cut(s) 51, 1250
HapII CCGG 5 cut(s) 133, 162, 728, 1218, 1262
HhaI GCGC 1 cut(s) 727
Hin1I GRCGYC 1 cut(s) 725
Hin1II CATG 4 cut(s) 320, 895, 1039, 1142
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 4 cut(s) 631, 886, 907, 1026
HpaII CCGG 5 cut(s) 133, 162, 728, 1218, 1262
HphI GGTGA 5 cut(s) 78, 281, 290, 955, 1067
Hpy166II GTNNAC 5 cut(s) 66, 139, 158, 667, 1172
Hpy188I TCNGA 2 cut(s) 57, 748
Hpy188III TCNNGA 3 cut(s) 471, 566, 911
Hpy8I GTNNAC 5 cut(s) 66, 139, 158, 667, 1172
HpyAV CCTTC 3 cut(s) 62, 566, 580
HpyCH4III ACNGT 4 cut(s) 419, 644, 664, 673
HpyCH4IV ACGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 4 cut(s) 369, 423, 479, 635
HpySE526I ACGT 1 cut(s) 307
Hsp92I GRCGYC 1 cut(s) 725
Hsp92II CATG 4 cut(s) 320, 895, 1039, 1142
HspAI GCGC 1 cut(s) 725
KasI GGCGCC 1 cut(s) 724
Ksp22I TGATCA 2 cut(s) 840, 973
Kzo9I GATC 3 cut(s) 743, 840, 973
LmnI GCTCC 1 cut(s) 996
Lsp1109I GCAGC 3 cut(s) 172, 241, 244
LweI GCATC 8 cut(s) 92, 197, 233, 269, 355, 420, 656, 850
MaeI CTAG 2 cut(s) 312, 851
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 3 cut(s) 100, 628, 883
MalI GATC 3 cut(s) 745, 842, 975
MboI GATC 3 cut(s) 743, 840, 973
MboII GAAGA 6 cut(s) 388, 515, 527, 581, 889, 1091
MfeI CAATTG 2 cut(s) 1098, 1165
MhlI GDGCHC 5 cut(s) 406, 669, 1001, 1148, 1252
MluCI AATT 5 cut(s) 21, 58, 348, 1098, 1165
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 3 cut(s) 625, 880, 1020
MmeI TCCRAC 1 cut(s) 1202
MseI TTAA 6 cut(s) 611, 828, 870, 948, 1004, 1294
MslI CAYNNNNRTG 1 cut(s) 1034
MspI CCGG 5 cut(s) 133, 162, 728, 1218, 1262
MspR9I CCNGG 4 cut(s) 134, 162, 163, 1262
MunI CAATTG 2 cut(s) 1098, 1165
MwoI GCNNNNNNNGC 1 cut(s) 254
NarI GGCGCC 1 cut(s) 725
NciI CCSGG 4 cut(s) 134, 162, 163, 1262
NdeII GATC 3 cut(s) 743, 840, 973
NlaIII CATG 4 cut(s) 320, 895, 1039, 1142
NlaIV GGNNCC 6 cut(s) 466, 561, 726, 824, 1250, 1266
NmuCI GTSAC 2 cut(s) 628, 883
NspI RCATGY 2 cut(s) 895, 1039
PaeI GCATGC 1 cut(s) 1039
PciI ACATGT 1 cut(s) 891
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 1283
PfeI GAWTC 1 cut(s) 907
PinAI ACCGGT 1 cut(s) 1217
PkrI GCNGC 3 cut(s) 187, 256, 259
PleI GAGTC 3 cut(s) 625, 880, 1020
PluTI GGCGCC 1 cut(s) 728
PpsI GAGTC 3 cut(s) 625, 880, 1020
PpuMI RGGWCCY 2 cut(s) 560, 823
PscI ACATGT 1 cut(s) 891
Psp124BI GAGCTC 1 cut(s) 1001
Psp5II RGGWCCY 2 cut(s) 560, 823
PspN4I GGNNCC 6 cut(s) 466, 561, 726, 824, 1250, 1266
PspOMI GGGCCC 1 cut(s) 1248
PspPI GGNCC 6 cut(s) 284, 560, 823, 1248, 1249, 1264
PspPPI RGGWCCY 2 cut(s) 560, 823
PstNI CAGNNNCTG 1 cut(s) 910
RsaI GTAC 2 cut(s) 301, 310
RsaNI GTAC 2 cut(s) 300, 309
RseI CAYNNNNRTG 1 cut(s) 1034
SacI GAGCTC 1 cut(s) 1001
SaqAI TTAA 6 cut(s) 611, 828, 870, 948, 1004, 1294
SatI GCNGC 3 cut(s) 186, 255, 258
Sau3AI GATC 3 cut(s) 743, 840, 973
Sau96I GGNCC 6 cut(s) 284, 560, 823, 1248, 1249, 1264
SchI GAGTC 3 cut(s) 625, 880, 1020
ScrFI CCNGG 4 cut(s) 134, 162, 163, 1262
SduI GDGCHC 5 cut(s) 406, 669, 1001, 1148, 1252
SfaNI GCATC 8 cut(s) 92, 197, 233, 269, 355, 420, 656, 850
SfcI CTRYAG 3 cut(s) 192, 228, 264
SfoI GGCGCC 1 cut(s) 726
SinI GGWCC 4 cut(s) 284, 560, 823, 1264
SmaI CCCGGG 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 1034
SpeI ACTAGT 2 cut(s) 311, 850
SphI GCATGC 1 cut(s) 1039
Sse9I AATT 5 cut(s) 21, 58, 348, 1098, 1165
SsiI CCGC 1 cut(s) 1240
SspDI GGCGCC 1 cut(s) 724
SspI AATATT 1 cut(s) 1225
SspMI CTAG 2 cut(s) 312, 851
SstI GAGCTC 1 cut(s) 1001
StyD4I CCNGG 4 cut(s) 132, 160, 161, 1260
TaaI ACNGT 4 cut(s) 419, 644, 664, 673
TaiI ACGT 1 cut(s) 310
TaqI TCGA 2 cut(s) 603, 1077
TasI AATT 5 cut(s) 21, 58, 348, 1098, 1165
TfiI GAWTC 1 cut(s) 907
Tru1I TTAA 6 cut(s) 611, 828, 870, 948, 1004, 1294
Tru9I TTAA 6 cut(s) 611, 828, 870, 948, 1004, 1294
TscAI CASTG 4 cut(s) 649, 676, 1023, 1153
TseFI GTSAC 2 cut(s) 628, 883
TseI GCWGC 3 cut(s) 185, 254, 257
Tsp45I GTSAC 2 cut(s) 628, 883
TspDTI ATGAA 5 cut(s) 383, 528, 815, 915, 1104
TspMI CCCGGG 1 cut(s) 161
TspRI CASTG 4 cut(s) 649, 676, 1023, 1153
VneI GTGCAC 1 cut(s) 665
VpaK11BI GGWCC 4 cut(s) 284, 560, 823, 1264
XapI RAATTY 1 cut(s) 58
XceI RCATGY 2 cut(s) 895, 1039
XmaI CCCGGG 1 cut(s) 161
XspI CTAG 2 cut(s) 312, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.