Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Forward (+)

7950732 .. 7959114

Gene Structure 8383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0051500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGCTCTCCATTGTTGGCAGTGCGCAAAGCTCACTCTGGTCCTCGTCGGGTGTTTTGATGAAGTTTGTGTGGTTATGTGAACTCTGTTTGCTTTCATTTCTGAAGGTTTCTATGTGGAGCACCCGTAATGCGAAGGTCAATCTGTTGCGATTGTTTGGAGAGCATATCCTAAGTGTTGATGTTGAAGATGGGCAGCCTCTTCTAGCATCTGGAGGTTCTTCTGGTGTTATAAGCATATGGAATCTCGAAAAAAGAAGGCTTCAATCAGTTATAAAAGAGGCCCACGATGGTTCTATACTTTCACTGCACTTCTTTGTGAATGAATCAGTGTTAATGAGTTCATCATCAGACAATTCTATTAAAATGTGGATTTTTGACACAAGCAATGGAGATGCTCGTCTTTTACGGTTTAGAAGTGGTCATAGTGCTCCTCCACAATGCATAAGGAAAGGATTCATTCTTATGATACTATGCTTCATGGACTTGATTGTACTAGTCCATTTTCTAGAAACATACTTGGTTTTCTCCCCTGTTTCTGGTTATGATCTGATAACCTCGGAGGAAGAGATAAAACTGAAACCTGTCATTGCTTTTGATTGTGCTGAAATAAGAGAGCGAGACTGGTGCAATGTTGTTACATGTCATATGGATACTGCACAGGCATATGTTTGGAGACTTCGAAACTTTGTTCTTGGGGAGCATATTCTGAAACCAAGACCAGAAAACCCAACACCTGCGAAGTTGGATATTTCTTCTCTTTTTTGGTTTCCATATGAGTTTTATTTTATTTTATTTGAAATGCCTGTGATCAGTGCATGTGGAAATTTTGCCATACTAGGGACCACTGGTGGTTGGATTGAGCGGTTCAACCTGCAGTCAGGAAGCAGCCGAGGTAATTATGTGGACCCATCGGAAAGAAGCATCTGTGCCCATGACGGGGAAGTTGTTGGAATTGCTTGTGATTCAACTAATACTCTCATGATTAGTGCCGGATATCATGGAGACATAAAGGTCTGGGATTTCAAGGGACGTGGAGTGCCATCTAGATGGGAAGTTGGGAGCTCTGTTGTCAGGATTGTATTCAATCGTTTGAATGGTCTCTTGGCTGTTGGGGCTGATGACTTATCCGCTTGTTTGATGTTGTGGCATCAAGAATGGTTAGTAAATTTGAAGGCCATACTGATCATGTCACAGACATGTGCTTTAGTGAGGATGGAAAGTGGCTCGTCTTCCCGTATGGATGGAGGTCTTCGAGTTTGGGATGTTCTCTTAGCAAGAAAAATCGATGCATTGCATGTTGATGTATCTGTGACGGCACTGTCTCTATCACCGAACATGGATATTTTAGCGACCTCCCATGTTGATCAAAATGGGGTCTATCTTTGGGTGAATCAATCAATGTTTTCGGGAGCTTCAAAGGTAGATACCTATGCAAGTGGAAAGCGAGTTGAACAAAATAAACTGATTGAGCCCCCAAAGAAACCCGAAAAGGCTCCTTTCTTTTTGCCTTCAGTTCCATCTCTTTCAGGAGAAATAATGTTTAAGCCTACTTGGTCAACAAATGAGGAGGCAAAAGGTGGTGAAGAATCATCTAGAATAAAGGCTGCTCTGACACCATCAATATTCCTTCAAGCGCTTCAGTCATCTGCAGAAATGAAGAATTTTTCAGAATTTACTGATTTCATCAAAACTTTGTCTCCATCATCCCTGGATATGGAACTTCGAATTCTTCGGATTGTAGGTGATGAGGATGAAGAAGAGCCAGAAAAGTTGCTTCCAATTGAACTGCTTCTCGACTATTTTATACACGAGACTGCATGCAGAAACAATTTTGACTTTGTACAAGCTGTGATCAGGGTTTTTCTGAAGATACATGGCGAAACAATTCGACGCCAGTCTAGACTACAGGATAAGGCAAGCAAACTCCAAGACGTTCAATGCAACACATGGCAAAGAGTAGATAAAATGTTTCAAAGTTCCAGGTGCATTGTCACTTTGGTTAGCAATTCACAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

672

Amino Acids

75.5

Weight (kDa)

5.86

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	35 - 126	9.5e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	36 - 130	7.2e-11	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	36 - 128	3.6e-09	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	47 - 128	2.9e-06	WDHD1 first WD40 domain
WD40_Prp19	PF24814	56 - 128	2.8e-06	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	62 - 126	2.2e-21	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	67 - 127	1.3e-06	THOC3 beta-propeller domain
Beta-prop_EML	PF23409	68 - 127	6.9e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	185 - 472	7.6e-57	WDR36/Utp21 second beta-propeller domain
Utp21	PF04192	484 - 667	4e-36	Utp21 specific WD40 associated putative domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	230, 272
AarI	CACCTGC	1 cut(s)	742
AasI	GACNNNNNNGTC	2 cut(s)	1010, 1318
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	2 cut(s)	742, 879
AccBSI	CCGCTC	1 cut(s)	862
AciI	CCGC	2 cut(s)	862, 1128
AcsI	RAATTY	5 cut(s)	823, 1165, 1660, 1670, 1725
AcuI	CTGAAG	4 cut(s)	122, 1494, 1622, 1886
AcyI	GRCGYC	1 cut(s)	1891
AfaI	GTAC	2 cut(s)	492, 1842
AfeI	AGCGCT	1 cut(s)	1635
AfiI	CCNNNNNNNGG	5 cut(s)	536, 837, 936, 937, 1714
AflIII	ACRYGT	2 cut(s)	638, 1196
AhlI	ACTAGT	1 cut(s)	493
AjiI	CACGTC	1 cut(s)	1031
AjnI	CCWGG	2 cut(s)	1707, 1979
AjuI	GAANNNNNNNTTGG	2 cut(s)	1085, 1117
AluBI	AGCT	4 cut(s)	30, 1062, 1412, 1847
AluI	AGCT	4 cut(s)	30, 1062, 1412, 1847
Alw21I	GWGCWC	3 cut(s)	122, 430, 1064
Alw26I	GTCTC	7 cut(s)	612, 667, 996, 1103, 1326, 1701, 1805
Aor51HI	AGCGCT	1 cut(s)	1635
AoxI	GGCC	2 cut(s)	279, 1173
ApeKI	GCWGC	3 cut(s)	193, 885, 1604
ApoI	RAATTY	5 cut(s)	823, 1165, 1660, 1670, 1725
Asp700I	GAANNNNTTC	3 cut(s)	452, 1788, 1884
AspLEI	GCGC	2 cut(s)	25, 1636
AspS9I	GGNCC	4 cut(s)	39, 280, 840, 904
AsuHPI	GGTGA	4 cut(s)	1320, 1399, 1592, 1754
AsuII	TTCGAA	2 cut(s)	679, 1723
AvaII	GGWCC	3 cut(s)	39, 840, 904
BaeGI	GKGCMC	1 cut(s)	931
BanII	GRGCYC	2 cut(s)	1064, 1473
BauI	CACGAG	1 cut(s)	1808
BbsI	GAAGAC	2 cut(s)	1221, 1241
Bbv12I	GWGCWC	3 cut(s)	122, 430, 1064
BbvI	GCAGC	3 cut(s)	205, 897, 1591
BceAI	ACGGC	1 cut(s)	1329
BcgI	CGANNNNNNTGC	2 cut(s)	606, 640
BciT130I	CCWGG	2 cut(s)	1709, 1981
BciVI	GTATCC	1 cut(s)	643
BclI	TGATCA	4 cut(s)	807, 1182, 1363, 1851
BcoDI	GTCTC	7 cut(s)	612, 667, 996, 1103, 1326, 1701, 1805
BcuI	ACTAGT	1 cut(s)	493
BfaI	CTAG	7 cut(s)	203, 494, 506, 836, 1044, 1593, 1899
BfmI	CTRYAG	3 cut(s)	872, 1647, 1904
BfoI	RGCGCY	1 cut(s)	1637
BfuAI	ACCTGC	2 cut(s)	742, 879
BfuI	GTATCC	1 cut(s)	643
BisI	GCNGC	3 cut(s)	194, 886, 1605
BlsI	GCNGC	3 cut(s)	195, 887, 1606
Bme1390I	CCNGG	2 cut(s)	1709, 1981
Bme18I	GGWCC	3 cut(s)	39, 840, 904
BmgBI	CACGTC	1 cut(s)	1031
BmgT120I	GGNCC	4 cut(s)	39, 280, 840, 904
BmiI	GGNNCC	3 cut(s)	841, 906, 1494
BmrFI	CCNGG	2 cut(s)	1709, 1981
BmsI	GCATC	5 cut(s)	215, 382, 930, 1156, 1276
BoxI	GACNNNNGTC	1 cut(s)	1894
BpiI	GAAGAC	2 cut(s)	1221, 1241
BpmI	CTGGAG	1 cut(s)	231
Bpu14I	TTCGAA	2 cut(s)	679, 1723
Bsa29I	ATCGAT	1 cut(s)	1284
BsaHI	GRCGYC	1 cut(s)	1891
BsaI	GGTCTC	1 cut(s)	1103
BsaJI	CCNNGG	3 cut(s)	555, 889, 1707
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 1681, 1711
Bsc4I	CCNNNNNNNGG	5 cut(s)	536, 837, 936, 937, 1714
Bse1I	ACTGG	3 cut(s)	626, 850, 1894
Bse3DI	GCAATG	4 cut(s)	391, 585, 634, 1289
BseBI	CCWGG	2 cut(s)	1709, 1981
BseCI	ATCGAT	1 cut(s)	1284
BseDI	CCNNGG	3 cut(s)	555, 889, 1707
BseGI	GGATG	5 cut(s)	1218, 1246, 1267, 1703, 1756
BseLI	CCNNNNNNNGG	5 cut(s)	536, 837, 936, 937, 1714
BseMI	GCAATG	4 cut(s)	391, 585, 634, 1289
BseNI	ACTGG	3 cut(s)	626, 850, 1894
BseRI	GAGGAG	2 cut(s)	420, 1580
BseSI	GKGCMC	1 cut(s)	931
BseXI	GCAGC	3 cut(s)	205, 897, 1591
BsgI	GTGCAG	2 cut(s)	290, 639
BshFI	GGCC	2 cut(s)	281, 1175
BshVI	ATCGAT	1 cut(s)	1284
BsiHKAI	GWGCWC	3 cut(s)	122, 430, 1064
BsiSI	CCGG	1 cut(s)	990
BslFI	GGGAC	2 cut(s)	853, 1041
BslI	CCNNNNNNNGG	5 cut(s)	536, 837, 936, 937, 1714
BsmAI	GTCTC	7 cut(s)	612, 667, 996, 1103, 1326, 1701, 1805
BsmFI	GGGAC	2 cut(s)	853, 1041
BsnI	GGCC	2 cut(s)	281, 1175
Bso31I	GGTCTC	1 cut(s)	1103
Bsp119I	TTCGAA	2 cut(s)	679, 1723
Bsp1286I	GDGCHC	5 cut(s)	122, 430, 931, 1064, 1473
Bsp1407I	TGTACA	1 cut(s)	1840
Bsp143I	GATC	5 cut(s)	544, 807, 1182, 1363, 1851
BspACI	CCGC	2 cut(s)	862, 1128
BspANI	GGCC	2 cut(s)	281, 1175
BspDI	ATCGAT	1 cut(s)	1284
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	3 cut(s)	841, 906, 1494
BspMAI	CTGCAG	2 cut(s)	876, 1651
BspMI	ACCTGC	2 cut(s)	742, 879
BspQI	GCTCTTC	1 cut(s)	1752
BspT104I	TTCGAA	2 cut(s)	679, 1723
BspTNI	GGTCTC	1 cut(s)	1103
BsrBI	CCGCTC	1 cut(s)	862
BsrDI	GCAATG	4 cut(s)	391, 585, 634, 1289
BsrGI	TGTACA	1 cut(s)	1840
BsrI	ACTGG	3 cut(s)	626, 850, 1894
BssECI	CCNNGG	3 cut(s)	555, 889, 1707
BssMI	GATC	5 cut(s)	544, 807, 1182, 1363, 1851
BssNI	GRCGYC	1 cut(s)	1891
BssSI	CACGAG	1 cut(s)	1808
Bst2BI	CACGAG	1 cut(s)	1808
Bst2UI	CCWGG	2 cut(s)	1709, 1981
Bst4CI	ACNGT	3 cut(s)	408, 1320, 2013
Bst6I	CTCTTC	3 cut(s)	204, 558, 1752
BstACI	GRCGYC	1 cut(s)	1891
BstAUI	TGTACA	1 cut(s)	1840
BstBI	TTCGAA	2 cut(s)	679, 1723
BstC8I	GCNNGC	2 cut(s)	1819, 1918
BstDEI	CTNAG	2 cut(s)	170, 1270
BstF5I	GGATG	5 cut(s)	1218, 1246, 1267, 1703, 1756
BstH2I	RGCGCY	1 cut(s)	1637
BstHHI	GCGC	2 cut(s)	25, 1636
BstKTI	GATC	5 cut(s)	547, 810, 1185, 1366, 1854
BstMAI	GTCTC	7 cut(s)	612, 667, 996, 1103, 1326, 1701, 1805
BstMBI	GATC	5 cut(s)	544, 807, 1182, 1363, 1851
BstMWI	GCNNNNNNNGC	1 cut(s)	1112
BstNI	CCWGG	2 cut(s)	1709, 1981
BstNSI	RCATGY	5 cut(s)	642, 819, 1200, 1298, 1821
BstPAI	GACNNNNGTC	1 cut(s)	1894
BstSCI	CCNGG	2 cut(s)	1707, 1979
BstSFI	CTRYAG	3 cut(s)	872, 1647, 1904
BstSLI	GKGCMC	1 cut(s)	931
BstV1I	GCAGC	3 cut(s)	205, 897, 1591
BstV2I	GAAGAC	2 cut(s)	1221, 1241
BstXI	CCANNNNNNTGG	1 cut(s)	1047
Bsu15I	ATCGAT	1 cut(s)	1284
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	2 cut(s)	281, 1175
BsuTUI	ATCGAT	1 cut(s)	1284
BtrI	CACGTC	1 cut(s)	1031
BtsCI	GGATG	5 cut(s)	1218, 1246, 1267, 1703, 1756
BtsI	GCAGTG	2 cut(s)	25, 302
BtsIMutI	CAGTG	6 cut(s)	25, 302, 333, 817, 843, 1316
BveI	ACCTGC	2 cut(s)	742, 879
Cac8I	GCNNGC	2 cut(s)	1819, 1918
CciI	TCATGA	1 cut(s)	978
CfoI	GCGC	2 cut(s)	25, 1636
Cfr13I	GGNCC	4 cut(s)	39, 280, 840, 904
ClaI	ATCGAT	1 cut(s)	1284
CseI	GACGC	1 cut(s)	1899
Csp6I	GTAC	2 cut(s)	491, 1841
CspCI	CAANNNNNGTGG	2 cut(s)	1012, 1047
CviQI	GTAC	2 cut(s)	491, 1841
DdeI	CTNAG	2 cut(s)	170, 1270
DpnI	GATC	5 cut(s)	546, 809, 1184, 1365, 1853
DpnII	GATC	5 cut(s)	544, 807, 1182, 1363, 1851
DrdI	GACNNNNNNGTC	2 cut(s)	1010, 1318
DseDI	GACNNNNNNGTC	2 cut(s)	1010, 1318
Eam1104I	CTCTTC	3 cut(s)	204, 558, 1752
EarI	CTCTTC	3 cut(s)	204, 558, 1752
Ecl136II	GAGCTC	1 cut(s)	1062
Eco24I	GRGCYC	2 cut(s)	1064, 1473
Eco31I	GGTCTC	1 cut(s)	1103
Eco32I	GATATC	1 cut(s)	995
Eco47I	GGWCC	3 cut(s)	39, 840, 904
Eco47III	AGCGCT	1 cut(s)	1635
Eco53kI	GAGCTC	1 cut(s)	1062
Eco57I	CTGAAG	4 cut(s)	122, 1494, 1622, 1886
EcoICRI	GAGCTC	1 cut(s)	1062
EcoRI	GAATTC	1 cut(s)	1725
EcoRII	CCWGG	2 cut(s)	1707, 1979
EcoRV	GATATC	1 cut(s)	995
EcoT22I	ATGCAT	2 cut(s)	443, 1291
EcoT38I	GRGCYC	2 cut(s)	1064, 1473
FaqI	GGGAC	2 cut(s)	853, 1041
FauNDI	CATATG	4 cut(s)	236, 645, 664, 772
FbaI	TGATCA	4 cut(s)	807, 1182, 1363, 1851
Fnu4HI	GCNGC	3 cut(s)	194, 886, 1605
FokI	GGATG	5 cut(s)	1225, 1253, 1274, 1690, 1763
FriOI	GRGCYC	2 cut(s)	1064, 1473
Fsp4HI	GCNGC	3 cut(s)	194, 886, 1605
FspBI	CTAG	7 cut(s)	203, 494, 506, 836, 1044, 1593, 1899
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	2 cut(s)	24, 1635
GluI	GCNGC	3 cut(s)	194, 886, 1605
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	1637
HaeIII	GGCC	2 cut(s)	281, 1175
HapII	CCGG	1 cut(s)	990
HgaI	GACGC	1 cut(s)	1899
HhaI	GCGC	2 cut(s)	25, 1636
Hin1I	GRCGYC	1 cut(s)	1891
Hin6I	GCGC	2 cut(s)	23, 1634
HinP1I	GCGC	2 cut(s)	23, 1634
HincII	GTYRAC	1 cut(s)	1557
HindII	GTYRAC	1 cut(s)	1557
HinfI	GANTC	6 cut(s)	241, 323, 453, 962, 1390, 1586
HpaII	CCGG	1 cut(s)	990
HphI	GGTGA	4 cut(s)	1320, 1399, 1592, 1754
Hpy166II	GTNNAC	3 cut(s)	80, 904, 1557
Hpy8I	GTNNAC	3 cut(s)	80, 904, 1557
Hpy99I	CGWCG	2 cut(s)	49, 1893
HpyAV	CCTTC	6 cut(s)	97, 127, 249, 1165, 1518, 1637
HpyCH4III	ACNGT	3 cut(s)	408, 1320, 2013
HpyCH4IV	ACGT	2 cut(s)	1030, 1932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1112
HpyF3I	CTNAG	2 cut(s)	170, 1270
HpySE526I	ACGT	2 cut(s)	1030, 1932
Hsp92I	GRCGYC	1 cut(s)	1891
HspAI	GCGC	2 cut(s)	23, 1634
Ksp22I	TGATCA	4 cut(s)	807, 1182, 1363, 1851
Kzo9I	GATC	5 cut(s)	544, 807, 1182, 1363, 1851
LguI	GCTCTTC	1 cut(s)	1752
LmnI	GCTCC	6 cut(s)	117, 433, 697, 1059, 1409, 1498
Lsp1109I	GCAGC	3 cut(s)	205, 897, 1591
LweI	GCATC	5 cut(s)	215, 382, 930, 1156, 1276
MaeI	CTAG	7 cut(s)	203, 494, 506, 836, 1044, 1593, 1899
MaeII	ACGT	2 cut(s)	1030, 1932
MaeIII	GTNAC	4 cut(s)	634, 1188, 1309, 1990
MalI	GATC	5 cut(s)	546, 809, 1184, 1365, 1853
MbiI	CCGCTC	1 cut(s)	862
MboI	GATC	5 cut(s)	544, 807, 1182, 1363, 1851
MfeI	CAATTG	1 cut(s)	1779
MhlI	GDGCHC	5 cut(s)	122, 430, 931, 1064, 1473
MmeI	TCCRAC	3 cut(s)	723, 833, 928
Mph1103I	ATGCAT	2 cut(s)	443, 1291
MroXI	GAANNNNTTC	3 cut(s)	452, 1788, 1884
MseI	TTAA	3 cut(s)	332, 360, 1542
MslI	CAYNNNNRTG	4 cut(s)	461, 1045, 1195, 1299
MspI	CCGG	1 cut(s)	990
MspR9I	CCNGG	2 cut(s)	1709, 1981
MunI	CAATTG	1 cut(s)	1779
MvaI	CCWGG	2 cut(s)	1709, 1981
MwoI	GCNNNNNNNGC	1 cut(s)	1112
NdeI	CATATG	4 cut(s)	236, 645, 664, 772
NdeII	GATC	5 cut(s)	544, 807, 1182, 1363, 1851
NlaIV	GGNNCC	3 cut(s)	841, 906, 1494
NmeAIII	GCCGAG	1 cut(s)	914
NmuCI	GTSAC	3 cut(s)	1188, 1309, 1990
NsbI	TGCGCA	1 cut(s)	24
NsiI	ATGCAT	2 cut(s)	443, 1291
NspI	RCATGY	5 cut(s)	642, 819, 1200, 1298, 1821
NspV	TTCGAA	2 cut(s)	679, 1723
PaeI	GCATGC	1 cut(s)	1821
PagI	TCATGA	1 cut(s)	978
PaqCI	CACCTGC	1 cut(s)	742
PciI	ACATGT	2 cut(s)	638, 1196
PciSI	GCTCTTC	1 cut(s)	1752
PdmI	GAANNNNTTC	3 cut(s)	452, 1788, 1884
PfeI	GAWTC	6 cut(s)	241, 323, 453, 962, 1390, 1586
PkrI	GCNGC	3 cut(s)	195, 887, 1606
PscI	ACATGT	2 cut(s)	638, 1196
PshAI	GACNNNNGTC	1 cut(s)	1894
PsiI	TTATAA	2 cut(s)	230, 272
Psp124BI	GAGCTC	1 cut(s)	1064
Psp6I	CCWGG	2 cut(s)	1707, 1979
PspGI	CCWGG	2 cut(s)	1707, 1979
PspN4I	GGNNCC	3 cut(s)	841, 906, 1494
PspPI	GGNCC	4 cut(s)	39, 280, 840, 904
PstI	CTGCAG	2 cut(s)	876, 1651
RsaI	GTAC	2 cut(s)	492, 1842
RsaNI	GTAC	2 cut(s)	491, 1841
RseI	CAYNNNNRTG	4 cut(s)	461, 1045, 1195, 1299
SacI	GAGCTC	1 cut(s)	1064
SapI	GCTCTTC	1 cut(s)	1752
SaqAI	TTAA	3 cut(s)	332, 360, 1542
SatI	GCNGC	3 cut(s)	194, 886, 1605
Sau3AI	GATC	5 cut(s)	544, 807, 1182, 1363, 1851
Sau96I	GGNCC	4 cut(s)	39, 280, 840, 904
ScrFI	CCNGG	2 cut(s)	1709, 1981
SduI	GDGCHC	5 cut(s)	122, 430, 931, 1064, 1473
SfaNI	GCATC	5 cut(s)	215, 382, 930, 1156, 1276
SfcI	CTRYAG	3 cut(s)	872, 1647, 1904
SfuI	TTCGAA	2 cut(s)	679, 1723
SinI	GGWCC	3 cut(s)	39, 840, 904
SmiMI	CAYNNNNRTG	4 cut(s)	461, 1045, 1195, 1299
SpeI	ACTAGT	1 cut(s)	493
SphI	GCATGC	1 cut(s)	1821
SsiI	CCGC	2 cut(s)	862, 1128
SspI	AATATT	1 cut(s)	1623
SspMI	CTAG	7 cut(s)	203, 494, 506, 836, 1044, 1593, 1899
SstI	GAGCTC	1 cut(s)	1064
StyD4I	CCNGG	2 cut(s)	1707, 1979
TaaI	ACNGT	3 cut(s)	408, 1320, 2013
TaiI	ACGT	2 cut(s)	1033, 1935
TaqI	TCGA	7 cut(s)	246, 679, 1252, 1284, 1723, 1794, 1888
TatI	WGTACW	2 cut(s)	490, 1840
TfiI	GAWTC	6 cut(s)	241, 323, 453, 962, 1390, 1586
Tru1I	TTAA	3 cut(s)	332, 360, 1542
Tru9I	TTAA	3 cut(s)	332, 360, 1542
TscAI	CASTG	6 cut(s)	25, 309, 333, 817, 850, 1323
TseFI	GTSAC	3 cut(s)	1188, 1309, 1990
TseI	GCWGC	3 cut(s)	193, 885, 1604
Tsp45I	GTSAC	3 cut(s)	1188, 1309, 1990
TspDTI	ATGAA	9 cut(s)	74, 84, 330, 336, 445, 466, 1670, 1672, 1767
TspRI	CASTG	6 cut(s)	25, 309, 333, 817, 850, 1323
VpaK11BI	GGWCC	3 cut(s)	39, 840, 904
XapI	RAATTY	5 cut(s)	823, 1165, 1660, 1670, 1725
XbaI	TCTAGA	4 cut(s)	505, 1043, 1592, 1898
XceI	RCATGY	5 cut(s)	642, 819, 1200, 1298, 1821
XmnI	GAANNNNTTC	3 cut(s)	452, 1788, 1884
XspI	CTAG	7 cut(s)	203, 494, 506, 836, 1044, 1593, 1899
Zsp2I	ATGCAT	2 cut(s)	443, 1291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.