Rroxscaffold_4G00319880

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
48078122 .. 48084375
6254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319880.1

Sequence Viewer

Length: 288 bp
ATGGCTAGAGCGAAGAAGGTAGGTGCTCGGCCTCATCCAACAGCTTCGGGGCTTGAAGACTCTTCAACGCAACTTCACCTTCTGCTCCTCGGGAAATTGAAGCTCTTCCTCCAGCAAGTTCCTACTCCTGCAAGTGATGAAGCTCCTGCACAAGTTCCTACTACCGCAACTCAAAGTCGAATTCTAATCCGGTTAGTACTTCAACAACTATTAAGCGTAGTTTTGTTTGGGTCTTTAGAGTGTATGATAAGGTTGTCAAGGGAAAAGATGCTGAAGGGAATGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.41

Weight (kDa)

10.28

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 1 cut(s) 198
AgsI TTSAA 4 cut(s) 56, 66, 100, 203
AluBI AGCT 3 cut(s) 44, 103, 143
AluI AGCT 3 cut(s) 44, 103, 143
Alw21I GWGCWC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 28
BfaI CTAG 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 89
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 28
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 31
BspQI GCTCTTC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 88
Bst6I CTCTTC 2 cut(s) 67, 110
BstF5I GGATG 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 34
Csp6I GTAC 1 cut(s) 197
CviJI RGCY 6 cut(s) 5, 31, 44, 52, 103, 143
CviKI_1 RGCY 6 cut(s) 5, 31, 44, 52, 103, 143
CviQI GTAC 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 67, 110
EarI CTCTTC 2 cut(s) 67, 110
Eco88I CYCGRG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 180
FaiI YATR 1 cut(s) 245
FokI GGATG 1 cut(s) 21
FspBI CTAG 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 190
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 190
HphI GGTGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 91
HpyAV CCTTC 3 cut(s) 10, 89, 268
HpyCH4V TGCA 2 cut(s) 131, 149
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 90, 148
LpnPI CCDG 4 cut(s) 125, 141, 159, 203
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 6
MboII GAAGA 4 cut(s) 25, 54, 68, 97
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 95, 180
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 3 cut(s) 42, 98, 119
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 1 cut(s) 212
MspI CCGG 1 cut(s) 190
NmeAIII GCCGAG 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 104
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 212
ScaI AGTACT 1 cut(s) 198
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 28
SetI ASST 7 cut(s) 21, 25, 46, 81, 105, 145, 254
SfaNI GCATC 1 cut(s) 258
Sse9I AATT 2 cut(s) 95, 180
SsiI CCGC 1 cut(s) 165
SspMI CTAG 1 cut(s) 6
TaqI TCGA 1 cut(s) 178
TasI AATT 2 cut(s) 95, 180
TatI WGTACW 1 cut(s) 196
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 153
XapI RAATTY 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.