Rmu_sc0001362.1_g000013
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001362.1
OG0001143
Physical Location & Seq
Reverse (-)
48726 .. 51624
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001362.1_g000013.1.cds

Sequence Viewer

Length: 648 bp
atgctagaagaattagtgacctgccaatggttgcaaaatagaaatgctgaactaagaagaacccgaggcccaatgatagatgaaaatgtacaaagggaaattataaaccaccggtcattgaggcatcctaacattgtccgattcaaagaggtaatattgacaccgactcatctggctattgtgatggaatatgcatctggaggagagctctttgagcggatatgcaatgcagggcggttcagtgaggatgaggcacgcttcttctttcaacaacttatatcaggagttagttactgtcatgcaatgcaagtgtgccatcgggacttgaagttggagaacacattgttagatggaagtcctgctcctcgtttaaaaatatgcgactttggctattcaaagatccgaagtcaaggcatgtggtgggcttttggatgtgggtttggggcagggggttcatgggatggttgtgaagatgggtttggcttcagatgtgtatgtgggtttgggtttgttggagatttagttaaggtgtttgagaagatgagtgagaggaacttggtgtcttggaattcaatgattgggctatcaattctggaggccttgttgtcagccgaagtggggtatagcttccggcgccggctagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005984 GO:0005985 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006638 GO:0006639 GO:0006641 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009311 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010119 GO:0010359 GO:0010646 GO:0010647 GO:0010857 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019432 GO:0019538 GO:0019752 GO:0019899 GO:0019902 GO:0019903 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0032409 GO:0032412 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0033559 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042742 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0043436 GO:0044070 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044262 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0046777 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0072330 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902456 GO:1903959 GO:1905957 GO:1905959 GO:2000377
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Pkinase

Protein Analysis

215

Amino Acids

24.55

Weight (kDa)

6.53

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 633
AccBSI CCGCTC 1 cut(s) 217
AciI CCGC 2 cut(s) 217, 235
AclWI GGATC 1 cut(s) 394
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 469
AcyI GRCGYC 1 cut(s) 634
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 27, 618
AgeI ACCGGT 1 cut(s) 111
AgsI TTSAA 5 cut(s) 145, 269, 328, 396, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AluBI AGCT 2 cut(s) 208, 627
AluI AGCT 2 cut(s) 208, 627
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 2 cut(s) 67, 597
ApoI RAATTY 1 cut(s) 568
AsiGI ACCGGT 1 cut(s) 111
AspLEI GCGC 1 cut(s) 636
AspS9I GGNCC 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 63
BanI GGYRCC 1 cut(s) 633
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BccI CCATC 5 cut(s) 178, 324, 344, 455, 467
BfaI CTAG 2 cut(s) 5, 641
BfoI RGCGCY 1 cut(s) 637
BfuAI ACCTGC 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 635
BmsI GCATC 2 cut(s) 133, 203
BplI GAGNNNNNCTC 2 cut(s) 192, 224
BpmI CTGGAG 2 cut(s) 219, 614
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 111
BsaXI ACNNNNNCTCC 4 cut(s) 507, 537, 587, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 618
Bse118I RCCGGY 2 cut(s) 111, 636
Bse3DI GCAATG 2 cut(s) 232, 309
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 4 cut(s) 124, 253, 437, 466
BseLI CCNNNNNNNGG 2 cut(s) 27, 618
BseMI GCAATG 2 cut(s) 232, 309
BseRI GAGGAG 2 cut(s) 216, 354
BshFI GGCC 2 cut(s) 69, 599
BshNI GGYRCC 1 cut(s) 633
BshTI ACCGGT 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 3 cut(s) 112, 631, 637
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 27, 618
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 2 cut(s) 69, 599
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 1 cut(s) 399
BspACI CCGC 2 cut(s) 217, 235
BspANI GGCC 2 cut(s) 69, 599
BspLI GGNNCC 1 cut(s) 635
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 1 cut(s) 394
BspT107I GGYRCC 1 cut(s) 633
BsrBI CCGCTC 1 cut(s) 217
BsrDI GCAATG 2 cut(s) 232, 309
BsrFI RCCGGY 2 cut(s) 111, 636
BsrGI TGTACA 1 cut(s) 88
BssAI RCCGGY 2 cut(s) 111, 636
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 399
BssNI GRCGYC 1 cut(s) 634
Bst4CI ACNGT 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 256, 638
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 4 cut(s) 124, 253, 437, 466
BstH2I RGCGCY 1 cut(s) 637
BstHHI GCGC 1 cut(s) 636
BstKTI GATC 1 cut(s) 402
BstMBI GATC 1 cut(s) 399
BstMWI GCNNNNNNNGC 3 cut(s) 214, 387, 633
BstNSI RCATGY 1 cut(s) 418
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
BsuRI GGCC 2 cut(s) 69, 599
BtsCI GGATG 4 cut(s) 124, 253, 437, 466
BtsIMutI CAGTG 1 cut(s) 247
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 256, 638
CfoI GCGC 1 cut(s) 636
Cfr10I RCCGGY 2 cut(s) 111, 636
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 89
CspAI ACCGGT 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 398, 433
CviAII CATG 3 cut(s) 299, 415, 456
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 1 cut(s) 53
DinI GGCGCC 1 cut(s) 635
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
DraI TTTAAA 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 599
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 469
Eco88I CYCGRG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 568
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 635
EheI GGCGCC 1 cut(s) 635
FaeI CATG 3 cut(s) 302, 418, 459
FaqI GGGAC 1 cut(s) 335
FatI CATG 3 cut(s) 298, 414, 455
FokI GGATG 4 cut(s) 111, 260, 444, 473
FriOI GRGCYC 1 cut(s) 210
FspBI CTAG 2 cut(s) 5, 641
GlaI GCGC 1 cut(s) 635
GsuI CTGGAG 2 cut(s) 219, 614
HaeII RGCGCY 1 cut(s) 637
HaeIII GGCC 2 cut(s) 69, 599
HapII CCGG 3 cut(s) 112, 631, 637
HhaI GCGC 1 cut(s) 636
Hin1I GRCGYC 1 cut(s) 634
Hin1II CATG 3 cut(s) 302, 418, 459
Hin6I GCGC 1 cut(s) 634
HinP1I GCGC 1 cut(s) 634
HinfI GANTC 2 cut(s) 141, 166
HpaII CCGG 3 cut(s) 112, 631, 637
Hpy188I TCNGA 3 cut(s) 140, 404, 488
Hpy188III TCNNGA 4 cut(s) 198, 282, 320, 593
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 6 cut(s) 34, 194, 225, 230, 302, 307
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 387, 633
HpyF3I CTNAG 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 634
Hsp92II CATG 3 cut(s) 302, 418, 459
HspAI GCGC 1 cut(s) 634
KasI GGCGCC 1 cut(s) 633
KroI GCCGGC 1 cut(s) 636
KroNI GCCGGC 1 cut(s) 638
Kzo9I GATC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 367
LweI GCATC 2 cut(s) 133, 203
MaeI CTAG 2 cut(s) 5, 641
MaeIII GTNAC 2 cut(s) 16, 290
MalI GATC 1 cut(s) 401
MbiI CCGCTC 1 cut(s) 217
MboI GATC 1 cut(s) 399
MboII GAAGA 5 cut(s) 20, 69, 253, 482, 550
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 4 cut(s) 11, 99, 568, 588
Mly113I GGCGCC 1 cut(s) 634
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 2 cut(s) 312, 493
MnlI CCTC 9 cut(s) 59, 114, 142, 194, 238, 244, 375, 543, 589
Mph1103I ATGCAT 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 636
MseI TTAA 2 cut(s) 371, 525
MspI CCGG 3 cut(s) 112, 631, 637
MwoI GCNNNNNNNGC 3 cut(s) 214, 387, 633
NaeI GCCGGC 1 cut(s) 638
NarI GGCGCC 1 cut(s) 634
NdeII GATC 1 cut(s) 399
NgoMIV GCCGGC 1 cut(s) 636
NlaIII CATG 3 cut(s) 302, 418, 459
NlaIV GGNNCC 1 cut(s) 635
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 1 cut(s) 418
PceI AGGCCT 1 cut(s) 599
PdiI GCCGGC 1 cut(s) 638
PfeI GAWTC 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 111
PleI GAGTC 1 cut(s) 160
PluTI GGCGCC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 160
PsiI TTATAA 1 cut(s) 104
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 635
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 1 cut(s) 399
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 371, 525
Sau3AI GATC 1 cut(s) 399
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 1 cut(s) 160
SduI GDGCHC 1 cut(s) 210
SetI ASST 5 cut(s) 23, 153, 210, 531, 629
SfaNI GCATC 2 cut(s) 133, 203
SfoI GGCGCC 1 cut(s) 635
Sse9I AATT 4 cut(s) 11, 99, 568, 588
SseBI AGGCCT 1 cut(s) 599
SsiI CCGC 2 cut(s) 217, 235
SspDI GGCGCC 1 cut(s) 633
SspI AATATT 1 cut(s) 156
SspMI CTAG 2 cut(s) 5, 641
SstI GAGCTC 1 cut(s) 210
StuI AGGCCT 1 cut(s) 599
TaaI ACNGT 1 cut(s) 296
TasI AATT 4 cut(s) 11, 99, 568, 588
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 371, 525
Tru9I TTAA 2 cut(s) 371, 525
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 96, 444
TspRI CASTG 1 cut(s) 247
XapI RAATTY 1 cut(s) 568
XceI RCATGY 1 cut(s) 418
XspI CTAG 2 cut(s) 5, 641
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.