RchiOBHm_Chr2g0162861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001143
Physical Location & Seq
Forward (+)
78513523 .. 78516365
2843 bp
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UTR
Exon/CDS
Intron
PRQ53108

Sequence Viewer

Length: 141 bp
ATGGCTAGGGAGAAGAAAACTGCTCGACCTCGACCAGGTGCTTCTGGTCTTGAGGATTCTTCAACAGCCACATCACCGGCTTCTCCTCCACTGCTCGAAGCTGCAAGCCAACATGAAGTTTTGTGTGCACATTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

46

Amino Acids

4.83

Weight (kDa)

6.7

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 2 cut(s) 63, 137
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 130
Alw44I GTGCAC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 36
BfaI CTAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 76
BseBI CCWGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 33
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 76
CsiI ACCWGGT 1 cut(s) 34
CviAII CATG 1 cut(s) 113
CviJI RGCY 5 cut(s) 5, 68, 80, 101, 108
CviKI_1 RGCY 5 cut(s) 5, 68, 80, 101, 108
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 34
FaeI CATG 1 cut(s) 116
FaiI YATR 1 cut(s) 114
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 102
HapII CCGG 1 cut(s) 77
Hin1II CATG 1 cut(s) 116
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 104, 128
Hsp92II CATG 1 cut(s) 116
LpnPI CCDG 4 cut(s) 21, 30, 48, 90
Lsp1109I GCAGC 1 cut(s) 88
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 1 cut(s) 6
MboII GAAGA 2 cut(s) 25, 51
MhlI GDGCHC 1 cut(s) 130
MnlI CCTC 3 cut(s) 39, 46, 96
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
NlaIII CATG 1 cut(s) 116
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
SatI GCNGC 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 130
SetI ASST 3 cut(s) 31, 40, 103
SexAI ACCWGGT 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 34
TaqI TCGA 3 cut(s) 25, 31, 96
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 1 cut(s) 96
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 96
VneI GTGCAC 1 cut(s) 126
XagI CCTNNNNNAGG 1 cut(s) 33
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.