Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Forward (+)

14743895 .. 14744468

Gene Structure 574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17601

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCGGAACCTTGAAATAGATGAAAATGTGCAAAGGGGAATCATGAACCACAGATCCTTGAAGCACCCCAATATTGTTGAATTTAAAGAGGTCCTGCTGACACCAACTCATCAAGGTATAGTAATGGAGTATGCTGAAGGAGGAGAACTGTATGAGAGAATTTGCAAGGCTGGTAAATTTAGTGAGGATGATGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

66

Amino Acids

7.63

Weight (kDa)

5.52

Isoelectric Point (pI)

24.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	7 - 66	2.9e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	3 cut(s)	80, 159, 176
AcuI	CTGAAG	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	14, 61, 80
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AlwI	GGATC	1 cut(s)	48
ApoI	RAATTY	3 cut(s)	80, 159, 176
AspS9I	GGNCC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	8
BmsI	GCATC	1 cut(s)	181
BseGI	GGATG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	53
BspACI	CCGC	1 cut(s)	4
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	48
BssMI	GATC	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	193
CciI	TCATGA	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	91
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	1 cut(s)	170
CviKI_1	RGCY	1 cut(s)	170
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
DraI	TTTAAA	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	91
FaeI	CATG	1 cut(s)	46
FaiI	YATR	4 cut(s)	44, 119, 132, 153
FatI	CATG	1 cut(s)	42
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	31, 165, 194
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	53
LpnPI	CCDG	2 cut(s)	107, 156
LweI	GCATC	1 cut(s)	181
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	3 cut(s)	80, 159, 176
MnlI	CCTC	3 cut(s)	82, 134, 178
MseI	TTAA	1 cut(s)	84
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	1 cut(s)	91
SetI	ASST	3 cut(s)	12, 93, 118
SfaNI	GCATC	1 cut(s)	181
SgeI	CNNG	7 cut(s)	23, 55, 70, 106, 125, 178, 183
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	3 cut(s)	80, 159, 176
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	150
TasI	AATT	3 cut(s)	80, 159, 176
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	36, 59
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	3 cut(s)	80, 159, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.