Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Reverse (-)

10075756 .. 10077859

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16042.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGAGAGGAAAGAAAGTAATTGTGCGACCCAACCGTTCTGCTTCTGGCCTTCAGAATTCGTCAACGACGACATCAGTAGCATCACCATCTCCTCCAGTTACATCAGTCCCTCTGCTCAAAGCTACAAACCCAAGTTCAAGTGAACCCGGGATTGAAGTTGGTCAAGTTGCTGCATCTGTAGGCGAGGGTGGTGTGGCTTCTGCTGCTGCATTTGTAGTGAGGATGGTGATGGTCTTGCTCAATCAGGGTAAGATTGGGGACTTTTCTGTTAAGAGTAAGAGTGGCACCTCTGGATTGCTTAGGCACATCAACCAAAACTATAGAGTTTTTTGGGGAGTGACTCTAAGGAATAGTGCATCATTGCACCCTACTCTGCACACTGTTTTTGTTGATGTGATTGATATGGAAAACAACATAAATAGCTTGTTTGTGGCGTCGGAGATGACAACTGGATCAGAAACTGAAAAGACATTGCAAGATATGGCAGGCAATATGAGAAGCAGATGGATGAAGTATTTTGGCTCTTTTGGGGACCTTAACAACATATTGATCATTGGACTAGTTTTGGATGCAAGATTTAAGTTGAAGAATGTGACTCATATGTATAATGAACAGAATCTGGATGTTGATGAGGTGGAGAGGAGAACAAAGGTGATTAAAGACCTGCTTATGGCTCTCTATGATCAGGTAATACTGGGGCGGGATGGCGGGATTGGGCCCGTCCTGTCCCGGTCCCGTCTGGGACGGGACTTGCGTGGGATAAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

258

Amino Acids

27.89

Weight (kDa)

9.83

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	120 - 228	8.6e-10	hAT-like transposase, RNase-H fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	2 cut(s)	703, 711
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	673
AgsI	TTSAA	3 cut(s)	141, 158, 589
AhlI	ACTAGT	1 cut(s)	562
AluBI	AGCT	2 cut(s)	125, 426
AluI	AGCT	2 cut(s)	125, 426
AlwI	GGATC	1 cut(s)	463
AlwNI	CAGNNNCTG	2 cut(s)	464, 622
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	49, 719
ApaI	GGGCCC	1 cut(s)	723
ApeKI	GCWGC	3 cut(s)	173, 206, 209
ApoI	RAATTY	1 cut(s)	58
AspS9I	GGNCC	4 cut(s)	535, 719, 720, 735
AsuC2I	CCSGG	3 cut(s)	150, 151, 733
AsuHPI	GGTGA	3 cut(s)	78, 241, 667
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	535, 735
BaeGI	GKGCMC	1 cut(s)	723
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	723
BbvI	GCAGC	3 cut(s)	160, 193, 196
BccI	CCATC	5 cut(s)	97, 220, 226, 501, 701
BclI	TGATCA	2 cut(s)	552, 685
BcnI	CCSGG	3 cut(s)	150, 151, 733
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	2 cut(s)	180, 322
BfuAI	ACCTGC	1 cut(s)	675
BisI	GCNGC	3 cut(s)	174, 207, 210
BlsI	GCNGC	3 cut(s)	175, 208, 211
Bme1390I	CCNGG	3 cut(s)	150, 151, 733
Bme18I	GGWCC	2 cut(s)	535, 735
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	4 cut(s)	535, 719, 720, 735
BmiI	GGNNCC	4 cut(s)	289, 536, 721, 737
BmrFI	CCNGG	3 cut(s)	150, 151, 733
BmrI	ACTGGG	1 cut(s)	707
BmsI	GCATC	4 cut(s)	92, 185, 368, 562
BmuI	ACTGGG	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	302
BpuMI	CCSGG	3 cut(s)	150, 151, 733
BsaHI	GRCGYC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	673
Bse1I	ACTGG	3 cut(s)	98, 457, 702
Bse3DI	GCAATG	2 cut(s)	362, 473
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	5 cut(s)	231, 516, 577, 631, 712
BseLI	CCNNNNNNNGG	1 cut(s)	673
BseMI	GCAATG	2 cut(s)	362, 473
BseNI	ACTGG	3 cut(s)	98, 457, 702
BseRI	GAGGAG	2 cut(s)	84, 658
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	3 cut(s)	160, 193, 196
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	51, 721
BshNI	GGYRCC	1 cut(s)	287
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	150, 733
BslFI	GGGAC	7 cut(s)	95, 275, 548, 715, 721, 759, 764
BslI	CCNNNNNNNGG	1 cut(s)	673
BsmFI	GGGAC	7 cut(s)	95, 275, 548, 715, 721, 759, 764
BsnI	GGCC	2 cut(s)	51, 721
BsoBI	CYCGRG	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	3 cut(s)	455, 552, 685
BspACI	CCGC	2 cut(s)	703, 711
BspANI	GGCC	2 cut(s)	51, 721
BspLI	GGNNCC	4 cut(s)	289, 536, 721, 737
BspMI	ACCTGC	1 cut(s)	675
BspPI	GGATC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	362, 473
BsrI	ACTGG	3 cut(s)	98, 457, 702
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	3 cut(s)	455, 552, 685
BssNI	GRCGYC	1 cut(s)	437
Bst4CI	ACNGT	2 cut(s)	38, 385
BstACI	GRCGYC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	302, 347
BstF5I	GGATG	5 cut(s)	231, 516, 577, 631, 712
BstKTI	GATC	3 cut(s)	458, 555, 688
BstMBI	GATC	3 cut(s)	455, 552, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	148, 149, 731
BstSFI	CTRYAG	2 cut(s)	180, 322
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	3 cut(s)	160, 193, 196
BsuRI	GGCC	2 cut(s)	51, 721
BtsCI	GGATG	5 cut(s)	231, 516, 577, 631, 712
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	490
CaiI	CAGNNNCTG	2 cut(s)	464, 622
Cfr13I	GGNCC	4 cut(s)	535, 719, 720, 735
Cfr9I	CCCGGG	1 cut(s)	149
CseI	GACGC	1 cut(s)	426
CviJI	RGCY	7 cut(s)	51, 125, 200, 426, 525, 677, 721
CviKI_1	RGCY	7 cut(s)	51, 125, 200, 426, 525, 677, 721
DdeI	CTNAG	2 cut(s)	302, 347
DpnI	GATC	3 cut(s)	457, 554, 687
DpnII	GATC	3 cut(s)	455, 552, 685
Eco24I	GRGCYC	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	535, 735
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	723
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	7 cut(s)	95, 275, 548, 715, 721, 759, 764
FauI	CCCGC	2 cut(s)	696, 704
FauNDI	CATATG	1 cut(s)	603
FbaI	TGATCA	2 cut(s)	552, 685
Fnu4HI	GCNGC	3 cut(s)	174, 207, 210
FokI	GGATG	5 cut(s)	238, 523, 584, 638, 719
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	3 cut(s)	174, 207, 210
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	3 cut(s)	174, 207, 210
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	51, 721
HapII	CCGG	2 cut(s)	150, 733
HgaI	GACGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	437
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	3 cut(s)	343, 598, 619
HpaII	CCGG	2 cut(s)	150, 733
HphI	GGTGA	3 cut(s)	78, 241, 667
Hpy166II	GTNNAC	2 cut(s)	66, 146
Hpy188I	TCNGA	3 cut(s)	57, 442, 460
Hpy188III	TCNNGA	2 cut(s)	294, 623
Hpy8I	GTNNAC	2 cut(s)	66, 146
Hpy99I	CGWCG	2 cut(s)	73, 442
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	38, 385
HpyCH4V	TGCA	7 cut(s)	176, 212, 359, 367, 379, 478, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	302, 347
Hsp92I	GRCGYC	1 cut(s)	437
Ksp22I	TGATCA	2 cut(s)	552, 685
Kzo9I	GATC	3 cut(s)	455, 552, 685
Lsp1109I	GCAGC	3 cut(s)	160, 193, 196
LweI	GCATC	4 cut(s)	92, 185, 368, 562
MaeI	CTAG	1 cut(s)	563
MaeIII	GTNAC	3 cut(s)	100, 340, 595
MalI	GATC	3 cut(s)	457, 554, 687
MboI	GATC	3 cut(s)	455, 552, 685
MboII	GAAGA	1 cut(s)	601
MhlI	GDGCHC	1 cut(s)	723
MluCI	AATT	2 cut(s)	21, 58
MlyI	GAGTC	2 cut(s)	337, 592
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	7 cut(s)	105, 123, 181, 216, 301, 628, 636
MseI	TTAA	5 cut(s)	273, 540, 582, 660, 772
MspI	CCGG	2 cut(s)	150, 733
MspR9I	CCNGG	3 cut(s)	150, 151, 733
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	3 cut(s)	150, 151, 733
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	3 cut(s)	455, 552, 685
NlaIV	GGNNCC	4 cut(s)	289, 536, 721, 737
NmuCI	GTSAC	2 cut(s)	340, 595
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 754
PfeI	GAWTC	1 cut(s)	619
PkrI	GCNGC	3 cut(s)	175, 208, 211
PleI	GAGTC	2 cut(s)	337, 592
PpsI	GAGTC	2 cut(s)	337, 592
PpuMI	RGGWCCY	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	535
PspN4I	GGNNCC	4 cut(s)	289, 536, 721, 737
PspOMI	GGGCCC	1 cut(s)	719
PspPI	GGNCC	4 cut(s)	535, 719, 720, 735
PspPPI	RGGWCCY	1 cut(s)	535
PstNI	CAGNNNCTG	2 cut(s)	464, 622
SaqAI	TTAA	5 cut(s)	273, 540, 582, 660, 772
SatI	GCNGC	3 cut(s)	174, 207, 210
Sau3AI	GATC	3 cut(s)	455, 552, 685
Sau96I	GGNCC	4 cut(s)	535, 719, 720, 735
SchI	GAGTC	2 cut(s)	337, 592
ScrFI	CCNGG	3 cut(s)	150, 151, 733
SduI	GDGCHC	1 cut(s)	723
SetI	ASST	8 cut(s)	127, 293, 428, 540, 639, 657, 669, 693
SfaNI	GCATC	4 cut(s)	92, 185, 368, 562
SfcI	CTRYAG	2 cut(s)	180, 322
SinI	GGWCC	2 cut(s)	535, 735
SmaI	CCCGGG	1 cut(s)	151
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	2 cut(s)	21, 58
SsiI	CCGC	2 cut(s)	703, 711
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	3 cut(s)	148, 149, 731
TaaI	ACNGT	2 cut(s)	38, 385
TasI	AATT	2 cut(s)	21, 58
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	5 cut(s)	273, 540, 582, 660, 772
Tru9I	TTAA	5 cut(s)	273, 540, 582, 660, 772
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	340, 595
TseI	GCWGC	3 cut(s)	173, 206, 209
Tsp45I	GTSAC	2 cut(s)	340, 595
TspDTI	ATGAA	2 cut(s)	527, 627
TspMI	CCCGGG	1 cut(s)	149
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	535, 735
XapI	RAATTY	1 cut(s)	58
XmaI	CCCGGG	1 cut(s)	149
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.