Rroxscaffold_6G00400050

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
22147604 .. 22149009
1406 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00400050.1

Sequence Viewer

Length: 201 bp
ATGATGGCTAGAGGAAAGAAGGGAGTTGCTCGACCTCATCCAACCGCTTCAGGGCTTGAAGACTCTTCAACCGCAACATCACCTTCTGCTCCTCTTCAAATTGAAGCTCTTCCTCCAGCAAATTCAATCCAGCAAGCTACTACAGGTTCAAACCAACATGTTCCTACTTCTGCAAGTGACAAAGCTGCTGCGAGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

6.68

Weight (kDa)

9.69

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 45, 72
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 51
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 6 cut(s) 59, 69, 98, 104, 126, 150
AluBI AGCT 3 cut(s) 107, 137, 185
AluI AGCT 3 cut(s) 107, 137, 185
ApeKI GCWGC 2 cut(s) 185, 188
ApoI RAATTY 1 cut(s) 121
Asp700I GAANNNNTTC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 172, 175
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 2 cut(s) 186, 189
BlsI GCNGC 2 cut(s) 187, 190
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 37, 201
BseLI CCNNNNNNNGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 172, 175
BslI CCNNNNNNNGG 1 cut(s) 51
BspACI CCGC 2 cut(s) 45, 72
BspQI GCTCTTC 1 cut(s) 114
Bst6I CTCTTC 3 cut(s) 70, 99, 114
BstC8I GCNNGC 1 cut(s) 135
BstF5I GGATG 2 cut(s) 37, 201
BstNSI RCATGY 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 172, 175
BstV2I GAAGAC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 37, 201
Cac8I GCNNGC 1 cut(s) 135
CviAII CATG 1 cut(s) 158
CviJI RGCY 5 cut(s) 8, 55, 107, 137, 185
CviKI_1 RGCY 5 cut(s) 8, 55, 107, 137, 185
Eam1104I CTCTTC 3 cut(s) 70, 99, 114
EarI CTCTTC 3 cut(s) 70, 99, 114
Eco57I CTGAAG 1 cut(s) 33
FaeI CATG 1 cut(s) 161
FaiI YATR 1 cut(s) 159
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 186, 189
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 186, 189
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 186, 189
GsuI CTGGAG 1 cut(s) 99
Hin1II CATG 1 cut(s) 161
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 13, 93
HpyCH4V TGCA 1 cut(s) 173
Hsp92II CATG 1 cut(s) 161
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 4 cut(s) 36, 129, 129, 143
Lsp1109I GCAGC 2 cut(s) 172, 175
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 176
MboII GAAGA 4 cut(s) 57, 71, 86, 101
MluCI AATT 2 cut(s) 99, 121
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 5 cut(s) 5, 45, 102, 123, 186
MroXI GAANNNNTTC 1 cut(s) 108
NlaIII CATG 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 1 cut(s) 161
PciI ACATGT 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 108
PkrI GCNGC 2 cut(s) 187, 190
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PscI ACATGT 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 114
SatI GCNGC 2 cut(s) 186, 189
SchI GAGTC 1 cut(s) 56
SetI ASST 6 cut(s) 37, 85, 109, 139, 148, 187
SfcI CTRYAG 1 cut(s) 141
Sse9I AATT 2 cut(s) 99, 121
SsiI CCGC 2 cut(s) 45, 72
SspMI CTAG 1 cut(s) 9
TaqI TCGA 1 cut(s) 31
TasI AATT 2 cut(s) 99, 121
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 185, 188
Tsp45I GTSAC 1 cut(s) 176
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 161
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.