FvH4_5g30172

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001143
Physical Location & Seq
Reverse (-)
21078851 .. 21084700
5850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30172.t1

Sequence Viewer

Length: 606 bp
ATGGCGAGAGGAAAGAAAGTAATTGTGCGACCCAACCGTTCTACTTCTGGCCTTCAACATTCATCAACGGTGACATCAATAACATCACCATCTCCTCCAGTTACAGCAGCCCCTCTGCTCGAAGCTACAAACCCAAGTTCAAGCGAGGGTGGTATGGCTTCTGCTGCTGGATCTATAGGTGATGATGTTGATGGTCCTGCTCAATCAGGTACGAAATGTACTAGTCATGTTTGGAAGCATTTCAAAGAGTATGAGAAAATTGAGAGAGTGAAAGATGCTGAGGGGAAGATAATTGAGATAGTTCAAAAAAGGGCTCATTGCATCTACTGTCCTAAGGGTAAGATTAGGGACTTTTCTGTTGAGAGTAAGAGTGGCACCTCTGGATTGCTTAGGCACATCAACCAAAATTCCGGACAAAAGGCTGGTGATGTGGTTAACTGTGTTGCAAGCTATGAGCTAGACTATGACATGGAGGGCTGCAATTTGGTTGTGGGATGGAATCAGAATTACATCCGGTGTTCACTACGTCATAGTTATCTCTCGTGTTGGCCAATGGATGAGGGGTTGGGTTCAATAGATGGAATGGATGAGTCGTTGGTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

202

Amino Acids

21.69

Weight (kDa)

6.59

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 374
AccIII TCCGGA 1 cut(s) 410
AclWI GGATC 1 cut(s) 178
AcoI YGGCCR 1 cut(s) 548
AcsI RAATTY 1 cut(s) 406
AfaI GTAC 2 cut(s) 211, 220
AgsI TTSAA 5 cut(s) 56, 141, 244, 305, 573
AhlI ACTAGT 1 cut(s) 221
AluBI AGCT 3 cut(s) 125, 450, 457
AluI AGCT 3 cut(s) 125, 450, 457
AlwI GGATC 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 410
AoxI GGCC 2 cut(s) 49, 548
ApeKI GCWGC 3 cut(s) 107, 164, 477
ApoI RAATTY 1 cut(s) 406
Asp700I GAANNNNTTC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 4 cut(s) 78, 82, 191, 437
AvaII GGWCC 1 cut(s) 194
AxyI CCTNAGG 1 cut(s) 333
BalI TGGCCA 1 cut(s) 550
BanI GGYRCC 1 cut(s) 374
BanII GRGCYC 1 cut(s) 316
BauI CACGAG 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 119, 151, 464
BccI CCATC 4 cut(s) 97, 185, 489, 572
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 2 cut(s) 222, 458
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 3 cut(s) 108, 165, 478
BlsI GCNGC 3 cut(s) 109, 166, 479
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 376
BmsI GCATC 2 cut(s) 265, 330
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 2 cut(s) 279, 389
BsaWI WCCGGW 2 cut(s) 410, 513
Bse1I ACTGG 1 cut(s) 98
Bse21I CCTNAGG 1 cut(s) 333
Bse3DI GCAATG 1 cut(s) 316
BseAI TCCGGA 1 cut(s) 410
BseGI GGATG 4 cut(s) 500, 510, 562, 592
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 119, 151, 464
BshFI GGCC 2 cut(s) 51, 550
BshNI GGYRCC 1 cut(s) 374
BsiSI CCGG 2 cut(s) 411, 514
BslFI GGGAC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 2 cut(s) 51, 550
Bsp1286I GDGCHC 1 cut(s) 316
Bsp13I TCCGGA 1 cut(s) 410
Bsp143I GATC 1 cut(s) 170
BspANI GGCC 2 cut(s) 51, 550
BspCNI CTCAG 1 cut(s) 271
BspEI TCCGGA 1 cut(s) 410
BspLI GGNNCC 1 cut(s) 376
BspPI GGATC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 1 cut(s) 98
BssMI GATC 1 cut(s) 170
BssSI CACGAG 1 cut(s) 541
Bst2BI CACGAG 1 cut(s) 541
Bst4CI ACNGT 4 cut(s) 38, 70, 329, 440
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 3 cut(s) 279, 333, 389
BstF5I GGATG 4 cut(s) 500, 510, 562, 592
BstKTI GATC 1 cut(s) 173
BstMBI GATC 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 119, 151, 464
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
Bsu36I CCTNAGG 1 cut(s) 333
BsuRI GGCC 2 cut(s) 51, 550
BtsCI GGATG 4 cut(s) 500, 510, 562, 592
Cac8I GCNNGC 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 2 cut(s) 210, 219
CviAII CATG 2 cut(s) 227, 469
CviQI GTAC 2 cut(s) 210, 219
DdeI CTNAG 3 cut(s) 279, 333, 389
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 194
Eco81I CCTNAGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 2 cut(s) 230, 472
FaiI YATR 8 cut(s) 155, 176, 228, 252, 453, 465, 470, 531
FaqI GGGAC 1 cut(s) 362
FatI CATG 2 cut(s) 226, 468
Fnu4HI GCNGC 3 cut(s) 108, 165, 478
FokI GGATG 4 cut(s) 497, 507, 569, 599
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 3 cut(s) 108, 165, 478
FspBI CTAG 2 cut(s) 222, 458
GluI GCNGC 3 cut(s) 108, 165, 478
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 51, 550
HapII CCGG 2 cut(s) 411, 514
Hin1II CATG 2 cut(s) 230, 472
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 2 cut(s) 499, 590
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 2 cut(s) 411, 514
HphI GGTGA 4 cut(s) 78, 82, 191, 437
Hpy166II GTNNAC 2 cut(s) 436, 521
Hpy188I TCNGA 1 cut(s) 504
Hpy188III TCNNGA 2 cut(s) 381, 411
Hpy8I GTNNAC 2 cut(s) 436, 521
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 4 cut(s) 38, 70, 329, 440
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 3 cut(s) 321, 446, 480
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 3 cut(s) 279, 333, 389
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 2 cut(s) 230, 472
Kpn2I TCCGGA 1 cut(s) 410
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 33, 111, 153, 192, 210, 366, 408, 424, 527
Lsp1109I GCAGC 3 cut(s) 119, 151, 464
LweI GCATC 2 cut(s) 265, 330
MaeI CTAG 2 cut(s) 222, 458
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 2 cut(s) 70, 100
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 1 cut(s) 298
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 316
MlsI TGGCCA 1 cut(s) 550
MluCI AATT 6 cut(s) 21, 258, 291, 406, 481, 505
MluNI TGGCCA 1 cut(s) 550
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 7 cut(s) 105, 123, 139, 274, 388, 466, 553
Mox20I TGGCCA 1 cut(s) 550
MroI TCCGGA 1 cut(s) 410
MroXI GAANNNNTTC 1 cut(s) 239
MscI TGGCCA 1 cut(s) 550
MseI TTAA 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 550
MspI CCGG 2 cut(s) 411, 514
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 1 cut(s) 170
NlaIII CATG 2 cut(s) 230, 472
NlaIV GGNNCC 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 499
PkrI GCNGC 3 cut(s) 109, 166, 479
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 2 cut(s) 211, 220
RsaNI GTAC 2 cut(s) 210, 219
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 3 cut(s) 108, 165, 478
Sau3AI GATC 1 cut(s) 170
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 599
SduI GDGCHC 1 cut(s) 316
SetI ASST 7 cut(s) 127, 181, 211, 380, 452, 459, 529
SfaNI GCATC 2 cut(s) 265, 330
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 194
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 6 cut(s) 21, 258, 291, 406, 481, 505
SspMI CTAG 2 cut(s) 222, 458
TaaI ACNGT 4 cut(s) 38, 70, 329, 440
TaiI ACGT 1 cut(s) 529
TaqI TCGA 1 cut(s) 120
TasI AATT 6 cut(s) 21, 258, 291, 406, 481, 505
TatI WGTACW 1 cut(s) 218
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 3 cut(s) 107, 164, 477
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 2 cut(s) 222, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.