RchiOBHm_Chr1g0320401

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001143
Physical Location & Seq
Forward (+)
8045508 .. 8047400
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55055

Sequence Viewer

Length: 276 bp
ATGGCTAGGGAGAAGAAAACTGCTCGACCTCGACCAGGTGCTTCTGGTCTTGAGGATTCTTCAACAGCCACATCACCGGCTTCTCCTCCACTGCTCGAAGCTGCAAGCCAACATGAAGTTGTAAGTGAACCTGCTGCAAGTCAACCTTCTGGAAGTGAAGCCGCAGCATCTGTAGGTGAGGCTCCTTCTGAAAAATCAGGTATAAAGCGTAGCTTTGTTTGGGACCATTTTAAAGAGGGCCTCATCTATATCTCCAAAACTGAAACAGACGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.45

Weight (kDa)

5.31

Isoelectric Point (pI)

61.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AciI CCGC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 63
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 101, 213
AluI AGCT 2 cut(s) 101, 213
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 101, 134, 164
AspS9I GGNCC 2 cut(s) 223, 238
AsuHPI GGTGA 2 cut(s) 66, 188
AvaII GGWCC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 88, 121, 176
BciT130I CCWGG 1 cut(s) 36
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 4 cut(s) 102, 135, 162, 165
BlsI GCNGC 4 cut(s) 103, 136, 163, 166
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 223, 238
BmiI GGNNCC 2 cut(s) 183, 224
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 76
BseBI CCWGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 88, 121, 176
BshFI GGCC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 240
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 183, 224
BspMI ACCTGC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 33
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 88, 121, 176
BsuRI GGCC 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 223, 238
CsiI ACCWGGT 1 cut(s) 34
CviAII CATG 1 cut(s) 113
CviJI RGCY 9 cut(s) 5, 68, 80, 101, 108, 161, 182, 213, 240
CviKI_1 RGCY 9 cut(s) 5, 68, 80, 101, 108, 161, 182, 213, 240
DraI TTTAAA 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 223
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 34
FaeI CATG 1 cut(s) 116
FaiI YATR 3 cut(s) 114, 203, 249
FalI AAGNNNNNCTT 4 cut(s) 130, 162, 197, 229
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 4 cut(s) 102, 135, 162, 165
Fsp4HI GCNGC 4 cut(s) 102, 135, 162, 165
FspBI CTAG 1 cut(s) 6
GluI GCNGC 4 cut(s) 102, 135, 162, 165
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 77
Hin1II CATG 1 cut(s) 116
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 77
HphI GGTGA 2 cut(s) 66, 188
Hpy166II GTNNAC 2 cut(s) 128, 143
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 2 cut(s) 50, 150
Hpy8I GTNNAC 2 cut(s) 128, 143
HpyAV CCTTC 2 cut(s) 156, 195
HpyCH4V TGCA 2 cut(s) 104, 137
Hsp92II CATG 1 cut(s) 116
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 21, 30, 48, 90, 135, 144, 183
Lsp1109I GCAGC 3 cut(s) 88, 121, 176
LweI GCATC 1 cut(s) 176
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 1 cut(s) 6
MboII GAAGA 2 cut(s) 25, 51
MnlI CCTC 6 cut(s) 39, 46, 96, 172, 229, 251
MseI TTAA 1 cut(s) 231
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 2 cut(s) 183, 224
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 103, 136, 163, 166
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 183, 224
PspPI GGNCC 2 cut(s) 223, 238
PstNI CAGNNNCTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 4 cut(s) 102, 135, 162, 165
Sau96I GGNCC 2 cut(s) 223, 238
ScrFI CCNGG 1 cut(s) 36
SetI ASST 8 cut(s) 31, 40, 103, 133, 148, 178, 202, 215
SexAI ACCWGGT 1 cut(s) 34
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SsiI CCGC 1 cut(s) 162
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 34
TaqI TCGA 3 cut(s) 25, 31, 96
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 96
TseI GCWGC 3 cut(s) 101, 134, 164
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 33
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.