Rw0G000570

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00020
OG0001143
Physical Location & Seq
Forward (+)
29091 .. 31725
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000570.1

Sequence Viewer

Length: 819 bp
ATGGCTAGAGCGAAGAAGGTAGCTGCTCGGCCTCATCCAACAGCTTCGGGGCTTGAAGACTCTTCAACCGCAACTTCACCTTCTGCTCCTAGGGAAATTGAAGCTCTTCCTCCAGCAAGTTCAACCGAGCAAGCTCTTACGGCTCCTGCACAAGTTCCTAGTCCTACTACTGCAACTCAAAGTCAGAATTCTAATCCGGTTAGTACTTCAACAACTATTAAGCGTAGTTTTGTTTGGGAACACTTTAAGGAGTATGATAAGGTTGTTAAGGGAAAAGATGCTGAAGGGAATGATGTAGATATTGTTAAGAAACGAGCTTATTGTATTCACTGTCCTAGAGGAAAAATAGGCGATTTTGCAGCGGATAGTTCTAGAAATGGGACTTCGGGGAAGATTAGGCATATTAATCAATTCTGCAGGTATTATCCCCCAAATGAGGAAGATGGCTTCGATATTTTGTGTTGGTGGAAGATAAATGGACCCAAGTTTCCCGTAGTGGCAGCAATAGCAAGAGATGTACTTGCTGTTCAAACATCCACAGTTGCATCGGAGTCTGCATTTAGCACTGGAGGGAGAGTTATTGATGCTTTTAGGAGTTCATTGACTCCTAAAACAGTGGAGGCTTTAATCTGCATGCAGAATTGGTTGTTGGGAGATGATATTGTTGCTCAAGATGTAGAGGAGCCTACAATTGAGAACACAGAGTTCTATGAGCAGGCTGAGAAAGATCATGAGAGCACTGCCTCCAGCAGAAATACACGTTCAACAATCCCGAAAGCAAAGGGGAAGGGAAAGGCTGCAGTGGTAAATGTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

272

Amino Acids

29.5

Weight (kDa)

6.54

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 146 - 216 2.8e-26 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 408
AciI CCGC 2 cut(s) 69, 362
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 2 cut(s) 205, 519
AfiI CCNNNNNNNGG 1 cut(s) 436
AflIII ACRYGT 1 cut(s) 758
AgsI TTSAA 7 cut(s) 56, 66, 101, 123, 210, 530, 765
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 5 cut(s) 23, 44, 104, 134, 317
AluI AGCT 5 cut(s) 23, 44, 104, 134, 317
Alw21I GWGCWC 1 cut(s) 740
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 4 cut(s) 23, 359, 500, 797
ApoI RAATTY 1 cut(s) 187
AseI ATTAAT 1 cut(s) 405
Asp700I GAANNNNTTC 1 cut(s) 105
AspA2I CCTAGG 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 1 cut(s) 479
AvrII CCTAGG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 740
BbvI GCAGC 4 cut(s) 10, 371, 512, 784
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 156
BfaI CTAG 5 cut(s) 6, 90, 159, 336, 372
BfmI CTRYAG 2 cut(s) 415, 798
BfuAI ACCTGC 1 cut(s) 408
BisI GCNGC 4 cut(s) 24, 360, 501, 798
BlnI CCTAGG 1 cut(s) 89
BlsI GCNGC 4 cut(s) 25, 361, 502, 799
BmcAI AGTACT 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 3 cut(s) 144, 481, 684
BmsI GCATC 3 cut(s) 268, 554, 574
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 3 cut(s) 96, 588, 730
BpuEI CTTGAG 1 cut(s) 654
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 571
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 2 cut(s) 34, 533
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 1 cut(s) 571
BseRI GAGGAG 1 cut(s) 695
BseXI GCAGC 4 cut(s) 10, 371, 512, 784
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 740
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 436
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 740
Bsp143I GATC 1 cut(s) 727
BspACI CCGC 2 cut(s) 69, 362
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 712
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 144, 481, 684
BspMAI CTGCAG 2 cut(s) 419, 802
BspMI ACCTGC 1 cut(s) 408
BspQI GCTCTTC 1 cut(s) 111
BsrI ACTGG 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 1 cut(s) 727
BssT1I CCWWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 332, 541, 616
Bst6I CTCTTC 2 cut(s) 67, 111
BstC8I GCNNGC 3 cut(s) 132, 635, 717
BstDEI CTNAG 1 cut(s) 720
BstF5I GGATG 2 cut(s) 34, 533
BstKTI GATC 1 cut(s) 730
BstMBI GATC 1 cut(s) 727
BstMWI GCNNNNNNNGC 2 cut(s) 140, 506
BstNSI RCATGY 1 cut(s) 637
BstSFI CTRYAG 2 cut(s) 415, 798
BstV1I GCAGC 4 cut(s) 10, 371, 512, 784
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 34, 533
BtsI GCAGTG 2 cut(s) 738, 807
BtsIMutI CAGTG 5 cut(s) 328, 564, 621, 738, 807
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 3 cut(s) 132, 635, 717
CciI TCATGA 1 cut(s) 730
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 204, 518
CviAII CATG 2 cut(s) 634, 731
CviQI GTAC 2 cut(s) 204, 518
DdeI CTNAG 1 cut(s) 720
DpnI GATC 1 cut(s) 729
DpnII GATC 1 cut(s) 727
Eam1104I CTCTTC 2 cut(s) 67, 111
EarI CTCTTC 2 cut(s) 67, 111
Eco130I CCWWGG 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 2 cut(s) 637, 734
FaiI YATR 5 cut(s) 255, 402, 635, 711, 732
FaqI GGGAC 1 cut(s) 394
FatI CATG 2 cut(s) 633, 730
Fnu4HI GCNGC 4 cut(s) 24, 360, 501, 798
FokI GGATG 2 cut(s) 21, 520
Fsp4HI GCNGC 4 cut(s) 24, 360, 501, 798
FspBI CTAG 5 cut(s) 6, 90, 159, 336, 372
GluI GCNGC 4 cut(s) 24, 360, 501, 798
GsuI CTGGAG 3 cut(s) 96, 588, 730
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 197
Hin1II CATG 2 cut(s) 637, 734
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 3 cut(s) 59, 551, 604
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 2 cut(s) 186, 550
Hpy188III TCNNGA 4 cut(s) 372, 671, 731, 772
Hpy8I GTNNAC 1 cut(s) 814
HpyAV CCTTC 4 cut(s) 10, 90, 278, 781
HpyCH4III ACNGT 3 cut(s) 332, 541, 616
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 9 cut(s) 149, 173, 359, 417, 545, 557, 633, 637, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 506
HpyF3I CTNAG 1 cut(s) 720
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 2 cut(s) 637, 734
Kzo9I GATC 1 cut(s) 727
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 3 cut(s) 91, 148, 682
LpnPI CCDG 7 cut(s) 126, 159, 210, 403, 552, 701, 760
Lsp1109I GCAGC 4 cut(s) 10, 371, 512, 784
LweI GCATC 3 cut(s) 268, 554, 574
MaeI CTAG 5 cut(s) 6, 90, 159, 336, 372
MaeII ACGT 1 cut(s) 760
MalI GATC 1 cut(s) 729
MboI GATC 1 cut(s) 727
MboII GAAGA 7 cut(s) 25, 54, 68, 98, 403, 452, 481
MfeI CAATTG 1 cut(s) 690
MhlI GDGCHC 1 cut(s) 740
MluCI AATT 5 cut(s) 96, 187, 410, 640, 690
MlyI GAGTC 3 cut(s) 53, 560, 598
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 8 cut(s) 42, 120, 332, 430, 563, 613, 673, 754
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 6 cut(s) 219, 246, 267, 306, 405, 626
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 690
MwoI GCNNNNNNNGC 2 cut(s) 140, 506
NdeII GATC 1 cut(s) 727
NlaIII CATG 2 cut(s) 637, 734
NlaIV GGNNCC 3 cut(s) 144, 481, 684
NmeAIII GCCGAG 1 cut(s) 7
NspI RCATGY 1 cut(s) 637
PaeI GCATGC 1 cut(s) 637
PagI TCATGA 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 4 cut(s) 25, 361, 502, 799
PleI GAGTC 3 cut(s) 53, 559, 598
PpsI GAGTC 3 cut(s) 53, 559, 598
PshBI ATTAAT 1 cut(s) 405
PspN4I GGNNCC 3 cut(s) 144, 481, 684
PspPI GGNCC 1 cut(s) 479
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PstI CTGCAG 2 cut(s) 419, 802
RsaI GTAC 2 cut(s) 205, 519
RsaNI GTAC 2 cut(s) 204, 518
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 6 cut(s) 219, 246, 267, 306, 405, 626
SatI GCNGC 4 cut(s) 24, 360, 501, 798
Sau3AI GATC 1 cut(s) 727
Sau96I GGNCC 1 cut(s) 479
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 3 cut(s) 53, 560, 598
SduI GDGCHC 1 cut(s) 740
SfaNI GCATC 3 cut(s) 268, 554, 574
SfcI CTRYAG 2 cut(s) 415, 798
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
SphI GCATGC 1 cut(s) 637
Sse9I AATT 5 cut(s) 96, 187, 410, 640, 690
SsiI CCGC 2 cut(s) 69, 362
SspMI CTAG 5 cut(s) 6, 90, 159, 336, 372
StyI CCWWGG 1 cut(s) 89
TaaI ACNGT 3 cut(s) 332, 541, 616
TaiI ACGT 1 cut(s) 763
TaqI TCGA 1 cut(s) 450
TasI AATT 5 cut(s) 96, 187, 410, 640, 690
TatI WGTACW 2 cut(s) 203, 517
Tru1I TTAA 6 cut(s) 219, 246, 267, 306, 405, 626
Tru9I TTAA 6 cut(s) 219, 246, 267, 306, 405, 626
TscAI CASTG 5 cut(s) 335, 571, 621, 745, 807
TseI GCWGC 4 cut(s) 23, 359, 500, 797
TspDTI ATGAA 1 cut(s) 588
TspRI CASTG 5 cut(s) 335, 571, 621, 745, 807
VpaK11BI GGWCC 1 cut(s) 479
VspI ATTAAT 1 cut(s) 405
XapI RAATTY 1 cut(s) 187
XbaI TCTAGA 1 cut(s) 371
XceI RCATGY 1 cut(s) 637
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 5 cut(s) 6, 90, 159, 336, 372
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.