pycom1242g00110
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001242
Physical Location & Seq
Forward (+)
159062 .. 159803
742 bp
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UTR
Exon/CDS
Intron
pycom1242g00110.1

Sequence Viewer

Length: 291 bp
ATGTATATAAAAGCCAAGCTGCTTATCTTATCGACCTCATTCACTCATGTGTCCCTCTGTTCATTCATGATTGTTTTAAATTTATTCAGTAATTTTTTGGTGATGCAGGTAGATGAACATGTTCGAAGGGAAATCATGAGCCATAGATCACTGAAGCATCCGAATATCATTCGATCCAAAGAGATGCAGATGGATGAACATGTTCAAAGGGAAATCACAAACCATAAATCACTGAAGAATCCGAATATCATTCGATTCAAAGAGTTACTTTTCAACATCCGACAACACTGA

Protein Analysis

97

Amino Acids

11.54

Weight (kDa)

10.0

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 2 cut(s) 173, 254
AflIII ACRYGT 2 cut(s) 118, 199
AgsI TTSAA 3 cut(s) 206, 259, 274
AleI CACNNNNGTG 1 cut(s) 47
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AlwI GGATC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 2 cut(s) 120, 201
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 124
BbvI GCAGC 1 cut(s) 6
BccI CCATC 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 97
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmsI GCATC 3 cut(s) 93, 166, 174
Bpu14I TTCGAA 1 cut(s) 124
BseGI GGATG 3 cut(s) 157, 199, 276
BseXI GCAGC 1 cut(s) 6
BslFI GGGAC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 37
Bsp119I TTCGAA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 146, 173
BspHI TCATGA 2 cut(s) 66, 135
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 124
BssMI GATC 2 cut(s) 146, 173
BstBI TTCGAA 1 cut(s) 124
BstF5I GGATG 3 cut(s) 157, 199, 276
BstKTI GATC 2 cut(s) 149, 176
BstMBI GATC 2 cut(s) 146, 173
BstNSI RCATGY 2 cut(s) 122, 203
BstV1I GCAGC 1 cut(s) 6
BtsCI GGATG 3 cut(s) 157, 199, 276
BtsIMutI CAGTG 3 cut(s) 149, 230, 286
BveI ACCTGC 1 cut(s) 97
CciI TCATGA 2 cut(s) 66, 135
CviAII CATG 5 cut(s) 47, 67, 119, 136, 200
CviJI RGCY 3 cut(s) 14, 19, 141
CviKI_1 RGCY 3 cut(s) 14, 19, 141
DpnI GATC 2 cut(s) 148, 175
DpnII GATC 2 cut(s) 146, 173
DraI TTTAAA 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 173, 254
FaeI CATG 5 cut(s) 50, 70, 122, 139, 203
FaiI YATR 9 cut(s) 6, 8, 48, 68, 120, 137, 144, 201, 225
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 1 cut(s) 37
FatI CATG 5 cut(s) 46, 66, 118, 135, 199
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 3 cut(s) 144, 206, 263
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
Hin1II CATG 5 cut(s) 50, 70, 122, 139, 203
HinfI GANTC 2 cut(s) 238, 255
HphI GGTGA 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 162, 243, 281
Hpy188III TCNNGA 2 cut(s) 67, 136
HpyAV CCTTC 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 106, 187
Hsp92II CATG 5 cut(s) 50, 70, 122, 139, 203
Kzo9I GATC 2 cut(s) 146, 173
LpnPI CCDG 1 cut(s) 92
Lsp1109I GCAGC 1 cut(s) 6
LweI GCATC 3 cut(s) 93, 166, 174
MaeIII GTNAC 1 cut(s) 264
MalI GATC 2 cut(s) 148, 175
MboI GATC 2 cut(s) 146, 173
MboII GAAGA 1 cut(s) 247
MluCI AATT 2 cut(s) 79, 91
MnlI CCTC 2 cut(s) 46, 65
MroXI GAANNNNTTC 2 cut(s) 120, 201
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 47
NdeII GATC 2 cut(s) 146, 173
NlaIII CATG 5 cut(s) 50, 70, 122, 139, 203
NspI RCATGY 2 cut(s) 122, 203
NspV TTCGAA 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 47
PagI TCATGA 2 cut(s) 66, 135
PciI ACATGT 2 cut(s) 118, 199
PdmI GAANNNNTTC 2 cut(s) 120, 201
PfeI GAWTC 2 cut(s) 238, 255
PkrI GCNGC 1 cut(s) 21
PscI ACATGT 2 cut(s) 118, 199
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 146, 173
SetI ASST 3 cut(s) 21, 38, 111
SfaNI GCATC 3 cut(s) 93, 166, 174
SfuI TTCGAA 1 cut(s) 124
SgeI CNNG 7 cut(s) 28, 59, 79, 119, 131, 148, 212
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 2 cut(s) 79, 91
TaqI TCGA 4 cut(s) 32, 124, 172, 253
TasI AATT 2 cut(s) 79, 91
TfiI GAWTC 2 cut(s) 238, 255
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 2 cut(s) 156, 237
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 51, 55, 129, 210
TspRI CASTG 2 cut(s) 156, 237
XapI RAATTY 1 cut(s) 79
XceI RCATGY 2 cut(s) 122, 203
XmnI GAANNNNTTC 2 cut(s) 120, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.