Rh7DG384800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001143
Physical Location & Seq
Forward (+)
52555435 .. 52561055
5621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG384800.1

Sequence Viewer

Length: 306 bp
ATGGCTAGAGCGAAGAAGGTAGCTGCTCGGCCTCATCCAACAGCTTCGGGGTTTGAAGACTCTTCAACCGCAACTTCACCTTCTGCTCCTAGGGAAATTGAAGCTCTTCCTCCAGCAAGTTCAACCGAGCAAGCTCTTACGGGTTCAAACCAGCAAGTTCCTACTCCTGCAAGTGATGAAGCTCCTGCACAAGTTCCTAGTCCTACTACTGCAACTCAAAGTCAGAATTCTAATCCGGCTAGTACTTCAACAACTATTAAGCGTAGTTTTGTTTGGGAACACTTTAAGGAGTATGATAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.68

Weight (kDa)

5.64

Isoelectric Point (pI)

69.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AcsI RAATTY 1 cut(s) 226
AfaI GTAC 1 cut(s) 244
AgsI TTSAA 6 cut(s) 56, 66, 101, 123, 147, 249
AluBI AGCT 5 cut(s) 23, 44, 104, 134, 182
AluI AGCT 5 cut(s) 23, 44, 104, 134, 182
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 105
AspA2I CCTAGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 69
AvrII CCTAGG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 10
BfaI CTAG 4 cut(s) 6, 90, 198, 240
BisI GCNGC 1 cut(s) 24
BlnI CCTAGG 1 cut(s) 89
BlsI GCNGC 1 cut(s) 25
BmcAI AGTACT 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 236
BsnI GGCC 1 cut(s) 31
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 31
BspQI GCTCTTC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 67, 111
BstC8I GCNNGC 1 cut(s) 132
BstF5I GGATG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 243
CviJI RGCY 8 cut(s) 5, 23, 31, 44, 104, 134, 182, 239
CviKI_1 RGCY 8 cut(s) 5, 23, 31, 44, 104, 134, 182, 239
CviQI GTAC 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 67, 111
EarI CTCTTC 2 cut(s) 67, 111
Eco130I CCWWGG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaiI YATR 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 4 cut(s) 6, 90, 198, 240
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 236
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 10, 90
HpyCH4V TGCA 3 cut(s) 170, 188, 212
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 91, 187
LpnPI CCDG 5 cut(s) 126, 164, 180, 198, 249
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 4 cut(s) 6, 90, 198, 240
MboII GAAGA 4 cut(s) 25, 54, 68, 98
MluCI AATT 2 cut(s) 96, 226
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 2 cut(s) 42, 120
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 258, 285
MspI CCGG 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 258, 285
SatI GCNGC 1 cut(s) 24
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 1 cut(s) 53
SetI ASST 7 cut(s) 21, 25, 46, 82, 106, 136, 184
Sse9I AATT 2 cut(s) 96, 226
SsiI CCGC 1 cut(s) 69
SspMI CTAG 4 cut(s) 6, 90, 198, 240
StyI CCWWGG 1 cut(s) 89
TasI AATT 2 cut(s) 96, 226
TatI WGTACW 1 cut(s) 242
Tru1I TTAA 2 cut(s) 258, 285
Tru9I TTAA 2 cut(s) 258, 285
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 192
XapI RAATTY 1 cut(s) 226
XmaJI CCTAGG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 4 cut(s) 6, 90, 198, 240
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.