Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8244943.1

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 779

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8244943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 344 bp

atagatgaaaatgtacaaagggaaattataaaccaccggtcattgaggcatcctaacattgtccgattcaaagaggtaatattgacaccgactcatctggctattgtgatggaatatgcatctggaggagagctctttgagcggatatgcaatgcagggcggttcagtgaggatgaggcacgcttcttctttcaacaacttatatcaggagttagttactgtcatgcaatgcaagtgtgccatcgggacttgaagttggagaacacattgttagatggaagtcctgctcctcgtttaaaaatatgcgactttggctattcaaaggtactagatccatccccccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

115

Amino Acids

13.16

Weight (kDa)

6.21

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
AccBSI	CCGCTC	1 cut(s)	142
AciI	CCGC	2 cut(s)	142, 160
AclWI	GGATC	1 cut(s)	326
AfaI	GTAC	2 cut(s)	15, 327
AgeI	ACCGGT	1 cut(s)	36
AgsI	TTSAA	4 cut(s)	70, 194, 253, 321
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	326
AsiGI	ACCGGT	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	4 cut(s)	103, 249, 269, 343
BfaI	CTAG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	58, 128
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	36
Bse3DI	GCAATG	2 cut(s)	157, 234
BseGI	GGATG	3 cut(s)	49, 178, 335
BseMI	GCAATG	2 cut(s)	157, 234
BseRI	GAGGAG	2 cut(s)	141, 279
BshTI	ACCGGT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	142, 160
BspPI	GGATC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	157, 234
BsrFI	RCCGGY	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	13
BssAI	RCCGGY	1 cut(s)	36
BssMI	GATC	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	49, 178, 335
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 312
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BtsCI	GGATG	3 cut(s)	49, 178, 335
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	14, 326
CspAI	ACCGGT	1 cut(s)	36
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	3 cut(s)	101, 133, 315
CviKI_1	RGCY	3 cut(s)	101, 133, 315
CviQI	GTAC	2 cut(s)	14, 326
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraI	TTTAAA	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	227
FaiI	YATR	6 cut(s)	29, 117, 148, 203, 225, 304
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	223
FokI	GGATG	3 cut(s)	36, 185, 322
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	1 cut(s)	37
Hin1II	CATG	1 cut(s)	227
HinfI	GANTC	2 cut(s)	66, 91
HpaII	CCGG	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	3 cut(s)	123, 207, 245
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	5 cut(s)	119, 150, 155, 227, 232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 312
Hsp92II	CATG	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	6 cut(s)	50, 83, 108, 141, 192, 297
LweI	GCATC	2 cut(s)	58, 128
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	333
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	1 cut(s)	331
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	39, 67, 119, 163, 169, 300
Mph1103I	ATGCAT	1 cut(s)	121
MseI	TTAA	1 cut(s)	296
MspI	CCGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	139, 312
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	66
PinAI	ACCGGT	1 cut(s)	36
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	2 cut(s)	15, 327
RsaNI	GTAC	2 cut(s)	14, 326
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	296
Sau3AI	GATC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	3 cut(s)	78, 135, 327
SfaNI	GCATC	2 cut(s)	58, 128
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	142, 160
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	221
TasI	AATT	1 cut(s)	24
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	172
XspI	CTAG	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.