Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003226.1

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Forward (+)

204595 .. 205794

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003226.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggaaaatccttcttcagccccaaaatttccccaccaaatgccgaaaaagcctctttcacctaacccttacatccaagtcgaccacgattcagctttcgctaccaagccgctaccagtaccgttcgatttgtccaaatctccgacctctgccgctcagaacattccggtgaagatagatgaaaatgtgcaaaggggaatcatgaaccacagatccttgaagcaccccaatattgttgaatttaaagaggtcctgctgacaccaactcatcaaggtatagtaatggagtatgctgaaggaggagaactgtatgagagaatttgcaaggctggaaaatttagtgaggatgatgcaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

119

Amino Acids

13.29

Weight (kDa)

6.51

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	2 cut(s)	110, 153
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	4 cut(s)	26, 239, 318, 335
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	220, 239
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AlwI	GGATC	1 cut(s)	207
ApoI	RAATTY	4 cut(s)	26, 239, 318, 335
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	51, 181
AvaII	GGWCC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	110, 153
BlsI	GCNGC	2 cut(s)	111, 154
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	72, 352
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	2 cut(s)	110, 153
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	201
BspPI	GGATC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	123, 309
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	72, 352
BstKTI	GATC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	72, 352
CciI	TCATGA	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	5 cut(s)	20, 52, 95, 109, 329
CviKI_1	RGCY	5 cut(s)	20, 52, 95, 109, 329
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
DraI	TTTAAA	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	250
FaeI	CATG	1 cut(s)	205
FaiI	YATR	4 cut(s)	203, 278, 291, 312
FatI	CATG	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	110, 153
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	110, 153
GluI	GCNGC	2 cut(s)	110, 153
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	89, 198
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	2 cut(s)	51, 181
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	144, 159
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	21, 290
HpyCH4III	ACNGT	2 cut(s)	123, 309
HpyCH4V	TGCA	3 cut(s)	190, 324, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	212
LpnPI	CCDG	4 cut(s)	129, 180, 266, 315
LweI	GCATC	1 cut(s)	340
MalI	GATC	1 cut(s)	214
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	1 cut(s)	212
MboII	GAAGA	2 cut(s)	6, 184
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	4 cut(s)	26, 239, 318, 335
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	5 cut(s)	63, 157, 241, 293, 337
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	205
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	89, 198
PkrI	GCNGC	2 cut(s)	111, 154
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	167
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	110, 153
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	1 cut(s)	250
SetI	ASST	5 cut(s)	64, 97, 149, 252, 277
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	26, 239, 318, 335
SsiI	CCGC	2 cut(s)	110, 153
SspI	AATATT	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	123, 309
TaqI	TCGA	2 cut(s)	81, 126
TasI	AATT	4 cut(s)	26, 239, 318, 335
TauI	GCSGC	2 cut(s)	112, 155
TfiI	GAWTC	2 cut(s)	89, 198
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TspDTI	ATGAA	2 cut(s)	195, 218
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	4 cut(s)	26, 239, 318, 335
XmiI	GTMKAC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.