Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007085.1

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Reverse (-)

29204 .. 29500

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007085.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

atggagaggtatgagattttgcaggatattggagctgggaattttgcggtgacaaagttggtcagagaaaagagtagcggaaaactctattgtattaagttgattgagagaggcaagaagatagatgaaaatgttcaaagggaaatcatgaaccacagatccttgaagcaccccaatattgttgaatttaaagaggttagtaagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

69

Amino Acids

8.09

Weight (kDa)

9.56

Isoelectric Point (pI)

24.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	47, 78
AclWI	GGATC	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	40, 185
AgsI	TTSAA	3 cut(s)	137, 166, 185
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
AlwI	GGATC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	40, 185
Asp700I	GAANNNNTTC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	158
BspACI	CCGC	2 cut(s)	47, 78
BspHI	TCATGA	1 cut(s)	147
BspPI	GGATC	1 cut(s)	153
BssMI	GATC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
CciI	TCATGA	1 cut(s)	147
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	1 cut(s)	35
CviKI_1	RGCY	1 cut(s)	35
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
DraI	TTTAAA	1 cut(s)	190
FaeI	CATG	1 cut(s)	151
FaiI	YATR	2 cut(s)	12, 149
FatI	CATG	1 cut(s)	147
GsaI	CCCAGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	2 cut(s)	8, 21
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	1 cut(s)	130
MflI	RGATCY	1 cut(s)	158
MluCI	AATT	2 cut(s)	40, 185
MnlI	CCTC	2 cut(s)	104, 187
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	2 cut(s)	96, 189
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	49
PagI	TCATGA	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	96, 189
Sau3AI	GATC	1 cut(s)	158
SetI	ASST	3 cut(s)	11, 37, 198
SgeI	CNNG	5 cut(s)	35, 48, 127, 160, 175
Sse9I	AATT	2 cut(s)	40, 185
SsiI	CCGC	2 cut(s)	47, 78
SspI	AATATT	1 cut(s)	178
TasI	AATT	2 cut(s)	40, 185
Tru1I	TTAA	2 cut(s)	96, 189
Tru9I	TTAA	2 cut(s)	96, 189
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	141, 164
XapI	RAATTY	2 cut(s)	40, 185
XmnI	GAANNNNTTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.