FvH4_3g19231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001143
Physical Location & Seq
Forward (+)
12420082 .. 12420595
514 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19231.t1

Sequence Viewer

Length: 342 bp
ATGGCTAAAGGGAAGAAAACACCGGTTCGTCCTCAACGAATTGCTTCTGGTCTGCAGGCTTCTTTTGAAGCAATTTCTACTCAACCGGATCGTCCTTCATCAGCAACAAGTTGGTCTGCACTTCTCCTACCAACTGGAAGTCAACCCACTCCTGCAAATCAACCTGATGCGACCCAACCTGCTGCCAGCCAACCTCCAAGTGAAGCAGTTGCATCTACAGGGGAGATTGATTTTGAAACATCAGGTATAAAACGAAGCTTTGTAGAATTGTTAATCTTATGCGCAGTAAATGATATTAGAAAAGCCTTGGCTTTGCCTCTATCTTGGCAAGTAAATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

11.91

Weight (kDa)

7.9

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 96
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 68, 236
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
AlwI GGATC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 182
AsiGI ACCGGT 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 169
BfmI CTRYAG 2 cut(s) 53, 216
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmsI GCATC 2 cut(s) 157, 221
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 2 cut(s) 22, 85
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 102
BshTI ACCGGT 1 cut(s) 22
BsiSI CCGG 2 cut(s) 23, 86
Bsp143I GATC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 57, 187
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstSFI CTRYAG 2 cut(s) 53, 216
BstV1I GCAGC 1 cut(s) 169
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 57, 187
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 22
CspAI ACCGGT 1 cut(s) 22
CviJI RGCY 6 cut(s) 5, 59, 189, 258, 305, 311
CviKI_1 RGCY 6 cut(s) 5, 59, 189, 258, 305, 311
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaiI YATR 2 cut(s) 248, 280
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
FspI TGCGCA 1 cut(s) 283
GlaI GCGC 1 cut(s) 283
GluI GCNGC 1 cut(s) 183
HapII CCGG 2 cut(s) 23, 86
HhaI GCGC 1 cut(s) 284
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 256
HpaII CCGG 2 cut(s) 23, 86
Hpy166II GTNNAC 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 105
HpyCH4V TGCA 4 cut(s) 55, 119, 155, 212
HspAI GCGC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 88
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 157, 221
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 25
MluCI AATT 3 cut(s) 39, 72, 266
MnlI CCTC 3 cut(s) 42, 204, 327
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 2 cut(s) 272, 340
MspI CCGG 2 cut(s) 23, 86
NdeII GATC 1 cut(s) 88
NsbI TGCGCA 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 43
PinAI ACCGGT 1 cut(s) 22
PkrI GCNGC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 57
SaqAI TTAA 2 cut(s) 272, 340
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 88
SetI ASST 5 cut(s) 166, 181, 196, 247, 260
SfaNI GCATC 2 cut(s) 157, 221
SfcI CTRYAG 2 cut(s) 53, 216
Sse9I AATT 3 cut(s) 39, 72, 266
StyI CCWWGG 1 cut(s) 306
TasI AATT 3 cut(s) 39, 72, 266
Tru1I TTAA 2 cut(s) 272, 340
Tru9I TTAA 2 cut(s) 272, 340
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.