Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Reverse (-)

7959231 .. 7971243

Gene Structure 12013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

ATGTGGAGGCTGAAGGTTTCAGAAGGAGGAAGAGATGGTAATCCATGGCTCACAAGTGTGAATAATCACATCGGGAGACAATTCTGGGAGTTCGACCCGAATCTTGGAACACCGGAAGAGCGAGCTCAAGTGGAAAAAGCACGTCTTGATTTTCATAACAATCGTTTTCGATCCAAACATAGCTCTGATTTATTAATGAGACTTCAGTTTGCAAAGGAGAAAGAAAGTGATCGAATGGAGCTACCAGCACAGGTGAAAATAAAAAGTGAAGAAGAAATTAATGAAGAAGTAGTAACAACCACATTGAGGAGGGGCTTGAGATTTTACTCAACTCTTCAGGTTGAGGATGGTTTCTGGCCTGGTGACTATGGCGGTCCTTTGTTTCTTCTACCTGGCTTGGTTATTGGATTATCTGTAACAGGGGACCTTGATGCAATCTTGCCACACGAGCATTCAAAGGAGATCCGCCGCTATCTTTATAACCATCAGAACAAAGATGGTGGTTGGGGACTGCATATAGAAGGGCCAAGTACAATGTTTTGTACAGCTCTGTCCTATGTGAGTCTCAGATTGCTCGGAGAGGAGATGGACGGCGGTGATGGCGCCATGGAGAAGGCAAGAAAATGGATTCTTCACCGTGGAGGAGTTACCACCATCCCATCATGGGGAAAGATGTGGCTCTCAGTACTTGGTGTATATGAATGGGACGGTAACAATCCACTGCCTCCTGAACTGTGGCTTTTACCGTACTTTCTCCCAGTACACCCAGGCCGAATGTGGTGTATCTGTAGGATGGTATACCTGCCCATGTCATATTTATACGGCAAGAGATTTGTTGGTCCCATCAACGACCTTATTTTATCCCTCAGAAGAGAGCTTTATACCTTTCCCTATCACCTGATTGATTGGGACCAAGCAAGAAATCTATGCGCCAAGGAGGATTTGTATTACCCACATCCCATTTTACAGGACGTGCTGTGGGGGTGTCTTCATAAGGTTGGGGAACCTCTTCTCATGAGATGGCCATTGTCTAACCTCAGGCAAAAAGCTCTCACCACCGTAATGGACCACATACACTATGAGGATGAAAACACTCAGTATATCTGCATTGGAGCTGTCAATAAGGTACTAAACATGATTTGTTGTTGGGTGGAGGATCAGAATTCAGAAGCATACAAGTGTCATCTTTCAAGAATCAAAGATTATCTATGGGTTGCAGAAGATGGAATGAAAATGCAGGGAACAGATGGATCTCAATGCTGGGATGTTGCTTTGGCTGTTCAAGCAATCCTTTCTACCAACCTTGTGAATGAATATGGTTCCGTGCTTAAGAAGGCGCACTATTTCATCAAAAATACACAAGTTAGGAGAGACAGCTATGGCAATCTACGTTACTGGTACCGTCACATTTCTAAGGGCGGATGGCCCTTCTCCACTCCAGACAATGGTTGGTCTGTCTCAGATTGTACAGCTGAAGGGTTAATGGCAGCACTCTTATTATCACGTATGCCCTGCGAAATTGTGGGAGAAGCAATAGCACCTGACCAACTGCATGATGCTGTTAATGTAGTATTATCCCTACAGAACAGCAATGGAGGGTTTGCATCATATGAACTCACAAGATCCTATGCCTGGTTGGAGACGATCAATCCAGCTGAAACATTTGGAGATATCATGATTGATTATCAGTATGTGGAATGCACATCATCAGCAGTTGAAGGCCTTAATGCATTCATGAAATTATATCCAGGGCATCGGAAGAAAGAAATAGAAGCATGTATTGCAAAGGCAGTTCAGTTCATCGAGAGCATACAACTTCCTGATGGCTCATGGTATGGGTCTTGGGGAGTTTGCTACACCTATGGAACATGGTTTGGAATAAAGGGGTTAATGGCTGGTGGCAAGACCTATCAGACAAGTAATAGCATTAGAAGAGCATGTCATTTCTTGCTATCTAAGCAACTCGATTCAGGTGGCTGGGGAGAGAGCTTTCTTTCATGCCAAAACAAGGTATACACAAATCTCGAAGGGAACAAACCACATATAGTAAACACTGCATGGGCTATGTTGGCTCTAATTGAAGCAGGGCAGGGTGAAAGGGACCCGATCCCCTTGCATCGAGCAGCAAAGGTATTGATCAATTCACAGATGGAAAATGGAGATTTCCCACAACAGCAAATCATGGGAGTCTTCAGCAAAAATTGCATGATTAGTTACTCCGCCTACAGAAATATCTTTCCCATCTGGGCACTTGGAGAGTATCGAAACCGGGTATTGGTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

761

Amino Acids

86.9

Weight (kDa)

6.21

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	148 - 405	2.7e-36	Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C	PF13243	418 - 756	6.3e-53	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
Acc36I	ACCTGC	1 cut(s)	810
Acc65I	GGTACC	1 cut(s)	1398
AccB1I	GGYRCC	2 cut(s)	602, 1398
AccB7I	CCANNNNNTGG	1 cut(s)	1445
AccI	GTMKAC	2 cut(s)	798, 2013
AciI	CCGC	6 cut(s)	372, 466, 469, 594, 1419, 2220
AclWI	GGATC	6 cut(s)	165, 457, 1164, 1258, 1617, 2101
AcoI	YGGCCR	1 cut(s)	1022
AcsI	RAATTY	1 cut(s)	1162
AcuI	CTGAAG	5 cut(s)	32, 188, 320, 1494, 2176
AcyI	GRCGYC	1 cut(s)	603
AfaI	GTAC	9 cut(s)	532, 544, 687, 749, 762, 1128, 1400, 1468, 2280
AfiI	CCNNNNNNNGG	8 cut(s)	104, 306, 664, 665, 1445, 1632, 2008, 2275
AflII	CTTAAG	1 cut(s)	1328
AgsI	TTSAA	5 cut(s)	456, 1191, 1283, 1718, 2081
AjiI	CACGTC	2 cut(s)	143, 973
AjnI	CCWGG	5 cut(s)	358, 391, 766, 1631, 1747
AleI	CACNNNNGTG	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	6 cut(s)	70, 193, 569, 1365, 1462, 1634
AlwI	GGATC	6 cut(s)	165, 457, 1164, 1258, 1617, 2101
AoxI	GGCC	6 cut(s)	356, 524, 769, 1022, 1424, 1720
ApeKI	GCWGC	2 cut(s)	1487, 2123
ApoI	RAATTY	1 cut(s)	1162
AseI	ATTAAT	2 cut(s)	194, 279
Asp700I	GAANNNNTTC	1 cut(s)	1008
Asp718I	GGTACC	1 cut(s)	1398
AspLEI	GCGC	3 cut(s)	605, 932, 1339
AspS9I	GGNCC	8 cut(s)	374, 424, 524, 839, 910, 1066, 1425, 2101
AsuC2I	CCSGG	1 cut(s)	2270
AsuHPI	GGTGA	7 cut(s)	265, 374, 608, 626, 887, 1045, 2105
AvaII	GGWCC	6 cut(s)	374, 424, 839, 910, 1066, 2101
AxyI	CCTNAGG	1 cut(s)	1037
BaeGI	GKGCMC	1 cut(s)	2251
BalI	TGGCCA	1 cut(s)	1024
BanI	GGYRCC	2 cut(s)	602, 1398
BanII	GRGCYC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	980, 2182
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	1499, 2135
BceAI	ACGGC	2 cut(s)	607, 838
BcgI	CGANNNNNNTGC	2 cut(s)	2095, 2129
BciT130I	CCWGG	5 cut(s)	360, 393, 768, 1633, 1749
BclI	TGATCA	1 cut(s)	2136
BcnI	CCSGG	1 cut(s)	2270
BcoDI	GTCTC	6 cut(s)	70, 193, 569, 1365, 1462, 1634
BfmI	CTRYAG	3 cut(s)	787, 1580, 2224
BfoI	RGCGCY	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	1328
BfuAI	ACCTGC	1 cut(s)	810
BisI	GCNGC	3 cut(s)	469, 1488, 2124
BlsI	GCNGC	3 cut(s)	470, 1489, 2125
BmcAI	AGTACT	1 cut(s)	687
Bme1390I	CCNGG	6 cut(s)	360, 393, 768, 1633, 1749, 2270
Bme18I	GGWCC	6 cut(s)	374, 424, 839, 910, 1066, 2101
BmgBI	CACGTC	2 cut(s)	143, 973
BmgT120I	GGNCC	8 cut(s)	374, 424, 524, 839, 910, 1066, 1425, 2101
BmiI	GGNNCC	9 cut(s)	425, 604, 841, 911, 1005, 1321, 1400, 2102, 2103
BmrFI	CCNGG	6 cut(s)	360, 393, 768, 1633, 1749, 2270
BmrI	ACTGGG	1 cut(s)	752
BmsI	GCATC	5 cut(s)	421, 1546, 1613, 1762, 2125
BmuI	ACTGGG	1 cut(s)	752
BpiI	GAAGAC	2 cut(s)	980, 2182
BpmI	CTGGAG	1 cut(s)	1422
BpuEI	CTTGAG	2 cut(s)	111, 337
BpuMI	CCSGG	1 cut(s)	2270
BsaAI	YACGTR	1 cut(s)	1505
BsaBI	GATNNNNATC	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	603
BsaJI	CCNNGG	6 cut(s)	44, 606, 637, 766, 933, 1748
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	929, 959
Bsc4I	CCNNNNNNNGG	8 cut(s)	104, 306, 664, 665, 1445, 1632, 2008, 2275
Bse1I	ACTGG	2 cut(s)	758, 1400
Bse21I	CCTNAGG	1 cut(s)	1037
Bse3DI	GCAATG	1 cut(s)	1597
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	5 cut(s)	360, 393, 768, 1633, 1749
BseDI	CCNNGG	6 cut(s)	44, 606, 637, 766, 933, 1748
BseGI	GGATG	7 cut(s)	352, 654, 798, 955, 1090, 1270, 1427
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	8 cut(s)	104, 306, 664, 665, 1445, 1632, 2008, 2275
BseMI	GCAATG	1 cut(s)	1597
BseMII	CTCAG	6 cut(s)	580, 696, 880, 1051, 1109, 1473
BseNI	ACTGG	2 cut(s)	758, 1400
BseRI	GAGGAG	3 cut(s)	322, 596, 657
BseSI	GKGCMC	1 cut(s)	2251
BseXI	GCAGC	2 cut(s)	1499, 2135
BseYI	CCCAGC	2 cut(s)	1260, 1977
BshFI	GGCC	6 cut(s)	358, 526, 771, 1024, 1426, 1722
BshNI	GGYRCC	2 cut(s)	602, 1398
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	113, 2269
BslFI	GGGAC	6 cut(s)	437, 522, 719, 825, 923, 2114
BslI	CCNNNNNNNGG	8 cut(s)	104, 306, 664, 665, 1445, 1632, 2008, 2275
BsmAI	GTCTC	6 cut(s)	70, 193, 569, 1365, 1462, 1634
BsmBI	CGTCTC	1 cut(s)	1634
BsmFI	GGGAC	6 cut(s)	437, 522, 719, 825, 923, 2114
BsmI	GAATGC	3 cut(s)	451, 1703, 1730
BsnI	GGCC	6 cut(s)	358, 526, 771, 1024, 1426, 1722
Bsp1286I	GDGCHC	2 cut(s)	127, 2251
Bsp1407I	TGTACA	2 cut(s)	542, 1466
Bsp143I	GATC	9 cut(s)	170, 229, 462, 1156, 1250, 1622, 1644, 2106, 2136
Bsp19I	CCATGG	2 cut(s)	44, 606
BspACI	CCGC	6 cut(s)	372, 466, 469, 594, 1419, 2220
BspANI	GGCC	6 cut(s)	358, 526, 771, 1024, 1426, 1722
BspCNI	CTCAG	6 cut(s)	579, 695, 879, 1050, 1108, 1472
BspHI	TCATGA	3 cut(s)	1014, 1674, 1734
BspLI	GGNNCC	9 cut(s)	425, 604, 841, 911, 1005, 1321, 1400, 2102, 2103
BspMI	ACCTGC	1 cut(s)	810
BspPI	GGATC	6 cut(s)	165, 457, 1164, 1258, 1617, 2101
BspQI	GCTCTTC	2 cut(s)	111, 1927
BspT107I	GGYRCC	2 cut(s)	602, 1398
BspTI	CTTAAG	1 cut(s)	1328
BsrDI	GCAATG	1 cut(s)	1597
BsrGI	TGTACA	2 cut(s)	542, 1466
BsrI	ACTGG	2 cut(s)	758, 1400
BssECI	CCNNGG	6 cut(s)	44, 606, 637, 766, 933, 1748
BssMI	GATC	9 cut(s)	170, 229, 462, 1156, 1250, 1622, 1644, 2106, 2136
BssNAI	GTATAC	2 cut(s)	799, 2014
BssNI	GRCGYC	1 cut(s)	603
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	3 cut(s)	44, 606, 933
Bst1107I	GTATAC	2 cut(s)	799, 2014
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	5 cut(s)	360, 393, 768, 1633, 1749
Bst4CI	ACNGT	6 cut(s)	638, 710, 735, 747, 1060, 1403
Bst6I	CTCTTC	6 cut(s)	25, 111, 339, 865, 1014, 1927
BstACI	GRCGYC	1 cut(s)	603
BstAFI	CTTAAG	1 cut(s)	1328
BstAPI	GCANNNNNTGC	2 cut(s)	1781, 2202
BstAUI	TGTACA	2 cut(s)	542, 1466
BstBAI	YACGTR	1 cut(s)	1505
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	8 cut(s)	566, 682, 866, 1037, 1095, 1413, 1459, 1956
BstDSI	CCRYGG	3 cut(s)	44, 606, 637
BstF5I	GGATG	7 cut(s)	352, 654, 798, 955, 1090, 1270, 1427
BstH2I	RGCGCY	1 cut(s)	606
BstHHI	GCGC	3 cut(s)	605, 932, 1339
BstKTI	GATC	9 cut(s)	173, 232, 465, 1159, 1253, 1625, 1647, 2109, 2139
BstMAI	GTCTC	6 cut(s)	70, 193, 569, 1365, 1462, 1634
BstMBI	GATC	9 cut(s)	170, 229, 462, 1156, 1250, 1622, 1644, 2106, 2136
BstMWI	GCNNNNNNNGC	7 cut(s)	448, 600, 1283, 1781, 1957, 2069, 2202
BstNI	CCWGG	5 cut(s)	360, 393, 768, 1633, 1749
BstNSI	RCATGY	2 cut(s)	1779, 1941
BstSCI	CCNGG	6 cut(s)	358, 391, 766, 1631, 1747, 2268
BstSFI	CTRYAG	3 cut(s)	787, 1580, 2224
BstSLI	GKGCMC	1 cut(s)	2251
BstV1I	GCAGC	2 cut(s)	1499, 2135
BstV2I	GAAGAC	2 cut(s)	980, 2182
BstX2I	RGATCY	3 cut(s)	462, 1250, 1622
BstXI	CCANNNNNNTGG	1 cut(s)	1063
BstYI	RGATCY	3 cut(s)	462, 1250, 1622
BstZ17I	GTATAC	2 cut(s)	799, 2014
Bsu36I	CCTNAGG	1 cut(s)	1037
BsuRI	GGCC	6 cut(s)	358, 526, 771, 1024, 1426, 1722
BtgI	CCRYGG	3 cut(s)	44, 606, 637
BtrI	CACGTC	2 cut(s)	143, 973
BtsCI	GGATG	7 cut(s)	352, 654, 798, 955, 1090, 1270, 1427
BtsI	GCAGTG	2 cut(s)	719, 2052
BtsIMutI	CAGTG	2 cut(s)	719, 2052
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	1 cut(s)	123
CciI	TCATGA	3 cut(s)	1014, 1674, 1734
CfoI	GCGC	3 cut(s)	605, 932, 1339
Cfr13I	GGNCC	8 cut(s)	374, 424, 524, 839, 910, 1066, 1425, 2101
Csp6I	GTAC	9 cut(s)	531, 543, 686, 748, 761, 1127, 1399, 1467, 2279
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviQI	GTAC	9 cut(s)	531, 543, 686, 748, 761, 1127, 1399, 1467, 2279
DdeI	CTNAG	8 cut(s)	566, 682, 866, 1037, 1095, 1413, 1459, 1956
DinI	GGCGCC	1 cut(s)	604
DpnI	GATC	9 cut(s)	172, 231, 464, 1158, 1252, 1624, 1646, 2108, 2138
DpnII	GATC	9 cut(s)	170, 229, 462, 1156, 1250, 1622, 1644, 2106, 2136
EaeI	YGGCCR	1 cut(s)	1022
Eam1104I	CTCTTC	6 cut(s)	25, 111, 339, 865, 1014, 1927
EarI	CTCTTC	6 cut(s)	25, 111, 339, 865, 1014, 1927
EciI	GGCGGA	3 cut(s)	455, 1434, 2209
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	3 cut(s)	44, 606, 933
Eco147I	AGGCCT	1 cut(s)	1722
Eco24I	GRGCYC	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	1672
Eco47I	GGWCC	6 cut(s)	374, 424, 839, 910, 1066, 2101
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	5 cut(s)	32, 188, 320, 1494, 2176
Eco81I	CCTNAGG	1 cut(s)	1037
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	424, 2101
EcoRI	GAATTC	1 cut(s)	1162
EcoRII	CCWGG	5 cut(s)	358, 391, 766, 1631, 1747
EcoRV	GATATC	1 cut(s)	1672
EcoT14I	CCWWGG	3 cut(s)	44, 606, 933
EcoT22I	ATGCAT	1 cut(s)	1732
EcoT38I	GRGCYC	1 cut(s)	127
EgeI	GGCGCC	1 cut(s)	604
EheI	GGCGCC	1 cut(s)	604
ErhI	CCWWGG	3 cut(s)	44, 606, 933
Esp3I	CGTCTC	1 cut(s)	1634
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 1275, 1307
FaqI	GGGAC	6 cut(s)	437, 522, 719, 825, 923, 2114
FauNDI	CATATG	1 cut(s)	1609
FbaI	TGATCA	1 cut(s)	2136
FblI	GTMKAC	2 cut(s)	798, 2013
Fnu4HI	GCNGC	3 cut(s)	469, 1488, 2124
FokI	GGATG	7 cut(s)	359, 641, 805, 942, 1097, 1277, 1434
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	3 cut(s)	469, 1488, 2124
GlaI	GCGC	3 cut(s)	604, 931, 1338
GluI	GCNGC	3 cut(s)	469, 1488, 2124
GsaI	CCCAGC	2 cut(s)	1264, 1981
GsuI	CTGGAG	1 cut(s)	1422
HaeII	RGCGCY	1 cut(s)	606
HaeIII	GGCC	6 cut(s)	358, 526, 771, 1024, 1426, 1722
HapII	CCGG	2 cut(s)	113, 2269
HhaI	GCGC	3 cut(s)	605, 932, 1339
Hin1I	GRCGYC	1 cut(s)	603
Hin6I	GCGC	3 cut(s)	603, 930, 1337
HinP1I	GCGC	3 cut(s)	603, 930, 1337
HinfI	GANTC	6 cut(s)	100, 562, 628, 1194, 1967, 2187
HpaII	CCGG	2 cut(s)	113, 2269
HphI	GGTGA	7 cut(s)	265, 374, 608, 626, 887, 1045, 2105
Hpy166II	GTNNAC	4 cut(s)	763, 799, 2014, 2050
Hpy8I	GTNNAC	4 cut(s)	763, 799, 2014, 2050
HpyAV	CCTTC	9 cut(s)	7, 17, 515, 607, 1327, 1438, 1469, 1712, 2021
HpyCH4III	ACNGT	6 cut(s)	638, 710, 735, 747, 1060, 1403
HpyCH4IV	ACGT	4 cut(s)	142, 972, 1390, 1504
HpyF10VI	GCNNNNNNNGC	7 cut(s)	448, 600, 1283, 1781, 1957, 2069, 2202
HpyF3I	CTNAG	8 cut(s)	566, 682, 866, 1037, 1095, 1413, 1459, 1956
HpySE526I	ACGT	4 cut(s)	142, 972, 1390, 1504
Hsp92I	GRCGYC	1 cut(s)	603
HspAI	GCGC	3 cut(s)	603, 930, 1337
KasI	GGCGCC	1 cut(s)	602
KflI	GGGWCCC	1 cut(s)	2101
KpnI	GGTACC	1 cut(s)	1402
Ksp22I	TGATCA	1 cut(s)	2136
Kzo9I	GATC	9 cut(s)	170, 229, 462, 1156, 1250, 1622, 1644, 2106, 2136
LguI	GCTCTTC	2 cut(s)	111, 1927
LmnI	GCTCC	2 cut(s)	238, 1112
Lsp1109I	GCAGC	2 cut(s)	1499, 2135
LweI	GCATC	5 cut(s)	421, 1546, 1613, 1762, 2125
MaeII	ACGT	4 cut(s)	142, 972, 1390, 1504
MaeIII	GTNAC	8 cut(s)	292, 362, 415, 646, 710, 1391, 1403, 2213
MalI	GATC	9 cut(s)	172, 231, 464, 1158, 1252, 1624, 1646, 2108, 2138
MboI	GATC	9 cut(s)	170, 229, 462, 1156, 1250, 1622, 1644, 2106, 2136
MflI	RGATCY	3 cut(s)	462, 1250, 1622
MhlI	GDGCHC	2 cut(s)	127, 2251
MlsI	TGGCCA	1 cut(s)	1024
MluCI	AATT	8 cut(s)	80, 276, 1162, 1518, 1739, 2076, 2140, 2200
MluNI	TGGCCA	1 cut(s)	1024
Mly113I	GGCGCC	1 cut(s)	603
MlyI	GAGTC	2 cut(s)	571, 2196
MmeI	TCCRAC	1 cut(s)	1617
Mox20I	TGGCCA	1 cut(s)	1024
Mph1103I	ATGCAT	1 cut(s)	1732
MroXI	GAANNNNTTC	1 cut(s)	1008
MscI	TGGCCA	1 cut(s)	1024
MseI	TTAA	7 cut(s)	194, 279, 1329, 1481, 1563, 1725, 1889
MslI	CAYNNNNRTG	3 cut(s)	56, 1061, 1177
Msp20I	TGGCCA	1 cut(s)	1024
MspA1I	CMGCKG	2 cut(s)	1472, 1655
MspCI	CTTAAG	1 cut(s)	1328
MspI	CCGG	2 cut(s)	113, 2269
MspR9I	CCNGG	6 cut(s)	360, 393, 768, 1633, 1749, 2270
Mva1269I	GAATGC	3 cut(s)	451, 1703, 1730
MvaI	CCWGG	5 cut(s)	360, 393, 768, 1633, 1749
MwoI	GCNNNNNNNGC	7 cut(s)	448, 600, 1283, 1781, 1957, 2069, 2202
NarI	GGCGCC	1 cut(s)	603
NciI	CCSGG	1 cut(s)	2270
NcoI	CCATGG	2 cut(s)	44, 606
NdeI	CATATG	1 cut(s)	1609
NdeII	GATC	9 cut(s)	170, 229, 462, 1156, 1250, 1622, 1644, 2106, 2136
NlaIV	GGNNCC	9 cut(s)	425, 604, 841, 911, 1005, 1321, 1400, 2102, 2103
NmuCI	GTSAC	2 cut(s)	362, 1403
NsiI	ATGCAT	1 cut(s)	1732
NspI	RCATGY	2 cut(s)	1779, 1941
OliI	CACNNNNGTG	1 cut(s)	56
PagI	TCATGA	3 cut(s)	1014, 1674, 1734
PceI	AGGCCT	1 cut(s)	1722
PciSI	GCTCTTC	2 cut(s)	111, 1927
PctI	GAATGC	3 cut(s)	451, 1703, 1730
PdmI	GAANNNNTTC	1 cut(s)	1008
PfeI	GAWTC	4 cut(s)	100, 628, 1194, 1967
PflMI	CCANNNNNTGG	1 cut(s)	1445
PkrI	GCNGC	3 cut(s)	470, 1489, 2125
PleI	GAGTC	2 cut(s)	570, 2195
PluTI	GGCGCC	1 cut(s)	606
PpsI	GAGTC	2 cut(s)	570, 2195
Ppu21I	YACGTR	1 cut(s)	1505
PpuMI	RGGWCCY	2 cut(s)	424, 2101
PshBI	ATTAAT	2 cut(s)	194, 279
PsiI	TTATAA	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	127
Psp5II	RGGWCCY	2 cut(s)	424, 2101
Psp6I	CCWGG	5 cut(s)	358, 391, 766, 1631, 1747
PspFI	CCCAGC	2 cut(s)	1260, 1977
PspGI	CCWGG	5 cut(s)	358, 391, 766, 1631, 1747
PspN4I	GGNNCC	9 cut(s)	425, 604, 841, 911, 1005, 1321, 1400, 2102, 2103
PspPI	GGNCC	8 cut(s)	374, 424, 524, 839, 910, 1066, 1425, 2101
PspPPI	RGGWCCY	2 cut(s)	424, 2101
PsuI	RGATCY	3 cut(s)	462, 1250, 1622
PvuII	CAGCTG	2 cut(s)	1472, 1655
RsaI	GTAC	9 cut(s)	532, 544, 687, 749, 762, 1128, 1400, 1468, 2280
RsaNI	GTAC	9 cut(s)	531, 543, 686, 748, 761, 1127, 1399, 1467, 2279
RseI	CAYNNNNRTG	3 cut(s)	56, 1061, 1177
SacI	GAGCTC	1 cut(s)	127
SapI	GCTCTTC	2 cut(s)	111, 1927
SaqAI	TTAA	7 cut(s)	194, 279, 1329, 1481, 1563, 1725, 1889
SatI	GCNGC	3 cut(s)	469, 1488, 2124
Sau3AI	GATC	9 cut(s)	170, 229, 462, 1156, 1250, 1622, 1644, 2106, 2136
Sau96I	GGNCC	8 cut(s)	374, 424, 524, 839, 910, 1066, 1425, 2101
ScaI	AGTACT	1 cut(s)	687
SchI	GAGTC	2 cut(s)	571, 2196
ScrFI	CCNGG	6 cut(s)	360, 393, 768, 1633, 1749, 2270
SduI	GDGCHC	2 cut(s)	127, 2251
SfaNI	GCATC	5 cut(s)	421, 1546, 1613, 1762, 2125
SfcI	CTRYAG	3 cut(s)	787, 1580, 2224
SfoI	GGCGCC	1 cut(s)	604
SinI	GGWCC	6 cut(s)	374, 424, 839, 910, 1066, 2101
SmiMI	CAYNNNNRTG	3 cut(s)	56, 1061, 1177
SmlI	CTYRAG	3 cut(s)	126, 316, 1328
SmoI	CTYRAG	3 cut(s)	126, 316, 1328
Sse9I	AATT	8 cut(s)	80, 276, 1162, 1518, 1739, 2076, 2140, 2200
SseBI	AGGCCT	1 cut(s)	1722
SsiI	CCGC	6 cut(s)	372, 466, 469, 594, 1419, 2220
SspDI	GGCGCC	1 cut(s)	602
SstI	GAGCTC	1 cut(s)	127
StuI	AGGCCT	1 cut(s)	1722
StyD4I	CCNGG	6 cut(s)	358, 391, 766, 1631, 1747, 2268
StyI	CCWWGG	3 cut(s)	44, 606, 933
TaaI	ACNGT	6 cut(s)	638, 710, 735, 747, 1060, 1403
TaiI	ACGT	4 cut(s)	145, 975, 1393, 1507
TaqI	TCGA	8 cut(s)	93, 169, 232, 1803, 1965, 2025, 2119, 2263
TasI	AATT	8 cut(s)	80, 276, 1162, 1518, 1739, 2076, 2140, 2200
TatI	WGTACW	5 cut(s)	530, 542, 685, 760, 1466
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	4 cut(s)	100, 628, 1194, 1967
Tru1I	TTAA	7 cut(s)	194, 279, 1329, 1481, 1563, 1725, 1889
Tru9I	TTAA	7 cut(s)	194, 279, 1329, 1481, 1563, 1725, 1889
TscAI	CASTG	2 cut(s)	726, 2059
TseFI	GTSAC	2 cut(s)	362, 1403
TseI	GCWGC	2 cut(s)	1487, 2123
Tsp45I	GTSAC	2 cut(s)	362, 1403
TspGWI	ACGGA	1 cut(s)	1312
TspRI	CASTG	2 cut(s)	726, 2059
Van91I	CCANNNNNTGG	1 cut(s)	1445
Vha464I	CTTAAG	1 cut(s)	1328
VpaK11BI	GGWCC	6 cut(s)	374, 424, 839, 910, 1066, 2101
VspI	ATTAAT	2 cut(s)	194, 279
XapI	RAATTY	1 cut(s)	1162
XceI	RCATGY	2 cut(s)	1779, 1941
XcmI	CCANNNNNNNNNTGG	2 cut(s)	774, 1446
XmiI	GTMKAC	2 cut(s)	798, 2013
XmnI	GAANNNNTTC	1 cut(s)	1008
ZrmI	AGTACT	1 cut(s)	687
Zsp2I	ATGCAT	1 cut(s)	1732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.