Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Reverse (-)

66891327 .. 66904644

Gene Structure 13318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG508000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAGCTTTCCATAAACCAAAACCCTACACACTACTCTATCACGATATCAACGGATCGTCCAATCCCTGTTTACAGTGACGCAGATGGCAGATCTGCATCAGATCCCCAATTCACCTCTTCTCCGCTAAGTCCCTCAACCATCGTTTTGTTTCCCCTCTCCATCGGTCGCCTGGAAACAGAAATAGATTTAGCTAGCAGGAATAAGATTTTCCTTCTCTTTCCTCTGTTCTCCGTTGGTTCGGCTGTACGCACTGAGATCACGACGATTCTACGAACCGCCGCCTCTACCACCGAAGACCTGCCAACACCTCCGCCCCTACCACCGCCTCCGACCGCACGTATAATTTCCTTCTCTTCTTCGATTCCACTTGGTGTGGTTCTAGCCATTCCACCATTTAACTATCCTGTCAACCTTGCCGTCTCAAAAATTGCTCCGGCATTGATTGCTGGAAACTCTCTTGTGCTCAAACCCCCAACTCAGGATATAGAATCCTGTTTATTTGATTCAAATCGTTCGATGGCTAGAGCGAAGAAGGTAGCTGCTCGGCCTCATCCAACCGCTTCGGGGCTTGAAGACTCTTCAACGGCAACTTCACCTTCTGCTCCTCGGGAAATTGAAGTTCTTCCTGCAAGTGATGAAGCTCCTGCGCAAGTTCCTACTCCTGCAAGTGATGAAGCTCCTGCGCAAGTTCCTACTACTGCAACTCAAAGTGATCATTCTAATCCGATTTATAAGTTGCAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko01100 ko01120 ko01200 map00010 map00030 map01100 map01120 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

249

Amino Acids

26.34

Weight (kDa)

5.37

Isoelectric Point (pI)

63.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	113 - 162	2.9e-14	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
Acc16I	TGCGCA	2 cut(s)	651, 687
Acc36I	ACCTGC	1 cut(s)	309
AciI	CCGC	7 cut(s)	125, 279, 282, 314, 326, 336, 561
AclWI	GGATC	2 cut(s)	63, 98
AdeI	CACNNNGTG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	481, 567
AgsI	TTSAA	4 cut(s)	510, 575, 585, 620
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	5 cut(s)	7, 194, 542, 644, 680
AluI	AGCT	5 cut(s)	7, 194, 542, 644, 680
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	427
AlwI	GGATC	2 cut(s)	63, 98
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	1 cut(s)	548
ApeKI	GCWGC	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	2 cut(s)	652, 688
AsuHPI	GGTGA	2 cut(s)	106, 588
AsuNHI	GCTAGC	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	609
BbsI	GAAGAC	2 cut(s)	303, 582
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	4 cut(s)	80, 149, 170, 514
BceAI	ACGGC	2 cut(s)	404, 603
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	3 cut(s)	195, 383, 525
BfuAI	ACCTGC	1 cut(s)	309
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	2 cut(s)	282, 543
BlsI	GCNGC	2 cut(s)	283, 544
Bme1390I	CCNGG	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	609
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	107
BmtI	GCTAGC	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	303, 582
BsaAI	YACGTR	1 cut(s)	341
BsaBI	GATNNNNATC	2 cut(s)	97, 510
BsaJI	CCNNGG	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 567
Bse8I	GATNNNNATC	2 cut(s)	97, 510
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	608
BseGI	GGATG	1 cut(s)	553
BseJI	GATNNNNATC	2 cut(s)	97, 510
BseLI	CCNNNNNNNGG	2 cut(s)	481, 567
BseMII	CTCAG	2 cut(s)	246, 494
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	1 cut(s)	529
Bsh1285I	CGRYCG	2 cut(s)	169, 336
BshFI	GGCC	1 cut(s)	550
BsiEI	CGRYCG	2 cut(s)	169, 336
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	481, 567
BsmAI	GTCTC	1 cut(s)	427
BsmBI	CGTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	550
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	5 cut(s)	55, 92, 103, 258, 715
BspACI	CCGC	7 cut(s)	125, 279, 282, 314, 326, 336, 561
BspANI	GGCC	1 cut(s)	550
BspCNI	CTCAG	2 cut(s)	247, 493
BspMI	ACCTGC	1 cut(s)	309
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	2 cut(s)	63, 98
BssECI	CCNNGG	1 cut(s)	608
BssMI	GATC	5 cut(s)	55, 92, 103, 258, 715
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	3 cut(s)	124, 361, 586
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	3 cut(s)	128, 255, 480
BstF5I	GGATG	1 cut(s)	553
BstHHI	GCGC	2 cut(s)	652, 688
BstKTI	GATC	5 cut(s)	58, 95, 106, 261, 718
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	5 cut(s)	55, 92, 103, 258, 715
BstMCI	CGRYCG	2 cut(s)	169, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	2 cut(s)	303, 582
BstX2I	RGATCY	2 cut(s)	92, 103
BstYI	RGATCY	2 cut(s)	92, 103
BsuRI	GGCC	1 cut(s)	550
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	749
BtsIMutI	CAGTG	3 cut(s)	82, 252, 749
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	2 cut(s)	652, 688
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	248
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	3 cut(s)	128, 255, 480
DpnI	GATC	5 cut(s)	57, 94, 105, 260, 717
DpnII	GATC	5 cut(s)	55, 92, 103, 258, 715
DraIII	CACNNNGTG	1 cut(s)	374
Eam1104I	CTCTTC	3 cut(s)	124, 361, 586
EarI	CTCTTC	3 cut(s)	124, 361, 586
EciI	GGCGGA	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	427
FaiI	YATR	4 cut(s)	14, 344, 488, 735
FaqI	GGGAC	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	2 cut(s)	282, 543
FokI	GGATG	1 cut(s)	540
Fsp4HI	GCNGC	2 cut(s)	282, 543
FspBI	CTAG	3 cut(s)	195, 383, 525
FspI	TGCGCA	2 cut(s)	651, 687
GlaI	GCGC	2 cut(s)	651, 687
GluI	GCNGC	2 cut(s)	282, 543
HaeIII	GGCC	1 cut(s)	550
HapII	CCGG	1 cut(s)	437
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	2 cut(s)	652, 688
Hin6I	GCGC	2 cut(s)	650, 686
HinP1I	GCGC	2 cut(s)	650, 686
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	5 cut(s)	268, 364, 491, 506, 578
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	2 cut(s)	106, 588
Hpy166II	GTNNAC	2 cut(s)	73, 412
Hpy188I	TCNGA	3 cut(s)	103, 333, 729
Hpy188III	TCNNGA	4 cut(s)	43, 262, 482, 611
Hpy8I	GTNNAC	2 cut(s)	73, 412
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	4 cut(s)	224, 361, 529, 609
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	5 cut(s)	98, 632, 668, 704, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	128, 255, 480
HpySE526I	ACGT	1 cut(s)	340
HspAI	GCGC	2 cut(s)	650, 686
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	5 cut(s)	55, 92, 103, 258, 715
LmnI	GCTCC	4 cut(s)	439, 610, 649, 685
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	3 cut(s)	195, 383, 525
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	5 cut(s)	57, 94, 105, 260, 717
MboI	GATC	5 cut(s)	55, 92, 103, 258, 715
MboII	GAAGA	8 cut(s)	111, 308, 348, 351, 544, 573, 587, 617
MflI	RGATCY	2 cut(s)	92, 103
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	4 cut(s)	110, 345, 429, 615
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	2 cut(s)	356, 581
MnlI	CCTC	9 cut(s)	127, 145, 167, 234, 295, 321, 339, 561, 618
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	1 cut(s)	399
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	5 cut(s)	55, 92, 103, 258, 715
NheI	GCTAGC	1 cut(s)	194
NmeAIII	GCCGAG	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	77
NsbI	TGCGCA	2 cut(s)	651, 687
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	4 cut(s)	268, 364, 491, 506
PkrI	GCNGC	2 cut(s)	283, 544
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Ppu21I	YACGTR	1 cut(s)	341
PsiI	TTATAA	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PsuI	RGATCY	2 cut(s)	92, 103
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	282, 543
Sau3AI	GATC	5 cut(s)	55, 92, 103, 258, 715
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	107
Sse9I	AATT	4 cut(s)	110, 345, 429, 615
SsiI	CCGC	7 cut(s)	125, 279, 282, 314, 326, 336, 561
SspMI	CTAG	3 cut(s)	195, 383, 525
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	362, 518
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	4 cut(s)	110, 345, 429, 615
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	4 cut(s)	268, 364, 491, 506
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	82, 259, 749
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	17, 654, 690
TspGWI	ACGGA	2 cut(s)	68, 223
TspRI	CASTG	3 cut(s)	82, 259, 749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	3 cut(s)	195, 383, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.