RchiOBHm_Chr1g0320071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001143
Physical Location & Seq
Forward (+)
7729758 .. 7732043
2286 bp
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UTR
Exon/CDS
Intron
PRQ55024

Sequence Viewer

Length: 183 bp
ATGGCTAGGGAGAAGAAAACTGCTCGACCTCGACCAGGTGCTTCTGGTCTTGAGGATTCTTCAACAGCCACATCACCGGCTTCTCCTCCACTGCTCGAAGCTGCAAGCCAACATGAAGTTGTAAGTGAACCTGCTGCAAGTCAACCTTCTGGAAGTGAAGCCGCAGCATCTGTAGACGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

5.93

Weight (kDa)

4.84

Isoelectric Point (pI)

69.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 174
AciI CCGC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 63
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 3 cut(s) 101, 134, 164
AsuHPI GGTGA 1 cut(s) 66
BbvI GCAGC 3 cut(s) 88, 121, 176
BciT130I CCWGG 1 cut(s) 36
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 4 cut(s) 102, 135, 162, 165
BlsI GCNGC 4 cut(s) 103, 136, 163, 166
Bme1390I CCNGG 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 76
BseBI CCWGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 3 cut(s) 88, 121, 176
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 33
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 88, 121, 176
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 76
CsiI ACCWGGT 1 cut(s) 34
CviAII CATG 1 cut(s) 113
CviJI RGCY 6 cut(s) 5, 68, 80, 101, 108, 161
CviKI_1 RGCY 6 cut(s) 5, 68, 80, 101, 108, 161
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 34
FaeI CATG 1 cut(s) 116
FaiI YATR 1 cut(s) 114
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FatI CATG 1 cut(s) 112
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 102, 135, 162, 165
Fsp4HI GCNGC 4 cut(s) 102, 135, 162, 165
FspBI CTAG 1 cut(s) 6
GluI GCNGC 4 cut(s) 102, 135, 162, 165
HapII CCGG 1 cut(s) 77
Hin1II CATG 1 cut(s) 116
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 3 cut(s) 128, 143, 175
Hpy188III TCNNGA 2 cut(s) 50, 150
Hpy8I GTNNAC 3 cut(s) 128, 143, 175
HpyAV CCTTC 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 104, 137
Hsp92II CATG 1 cut(s) 116
LpnPI CCDG 6 cut(s) 21, 30, 48, 90, 135, 144
Lsp1109I GCAGC 3 cut(s) 88, 121, 176
LweI GCATC 1 cut(s) 176
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 1 cut(s) 6
MboII GAAGA 2 cut(s) 25, 51
MnlI CCTC 3 cut(s) 39, 46, 96
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
NlaIII CATG 1 cut(s) 116
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 103, 136, 163, 166
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 170
SatI GCNGC 4 cut(s) 102, 135, 162, 165
ScrFI CCNGG 1 cut(s) 36
SetI ASST 5 cut(s) 31, 40, 103, 133, 148
SexAI ACCWGGT 1 cut(s) 34
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SsiI CCGC 1 cut(s) 162
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 34
TaqI TCGA 3 cut(s) 25, 31, 96
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 1 cut(s) 96
TseI GCWGC 3 cut(s) 101, 134, 164
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.