Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006536.1

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Reverse (-)

65 .. 811

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006536.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggctagagggaagaaaatagctcgacctcgatcagatgcttctggtcttgaggattcatcaacaaccacatcaccgtcttttcctgcactgctcgaagctgcaagagaacctgaaggtggaaattcaactcttgaacgagctgcaagtcaacctactgcaagtcaaccttctggaagtgaagctgctgcatctgtaggtgagactccctctgaaaaatcaggtataaaacgtagctttgtttgggagcattttaaagagtatgataagattgaacatgctaaagatgctgatggaaaagacattcagatagctcataagagagctcattgcatctactgtcctaggggaaaggttggtgattttgctgttgaaagttctaagaatggcacttatggtatgattaggcacattaacttgacttgtagatattatcctcctaatatggaaaagtcgcagaaaaatcttgttggtgataaatttaagggcaatagactaaccacagtaacttataatcaagatgattatttagaaggttatgtagagatgattgttattgatgagcttccttttagttctgtggagaagaaaggctttaacagattttgtgttaaagtgtgtcctcttttttatgttccttctagaaggaaattgtgtaggacatttctcagtatgtatgatacttcaaagaaggatttgaagaagactttgaggaagtataggttgagtctaaccaccgatacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

248

Amino Acids

27.85

Weight (kDa)

9.24

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AcsI	RAATTY	2 cut(s)	124, 479
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	6 cut(s)	129, 137, 275, 374, 687, 700
AluBI	AGCT	8 cut(s)	23, 101, 143, 185, 237, 314, 326, 565
AluI	AGCT	8 cut(s)	23, 101, 143, 185, 237, 314, 326, 565
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	197
ApeKI	GCWGC	4 cut(s)	101, 143, 185, 188
ApoI	RAATTY	2 cut(s)	124, 479
AspA2I	CCTAGG	1 cut(s)	344
AsuHPI	GGTGA	4 cut(s)	66, 212, 371, 485
AvrII	CCTAGG	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	4 cut(s)	88, 130, 172, 175
BccI	CCATC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	6, 345, 642
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	4 cut(s)	102, 144, 186, 189
BlnI	CCTAGG	1 cut(s)	344
BlsI	GCNGC	4 cut(s)	103, 145, 187, 190
BmsI	GCATC	4 cut(s)	28, 200, 277, 342
BpiI	GAAGAC	1 cut(s)	710
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	682
BseXI	GCAGC	4 cut(s)	88, 130, 172, 175
BsgI	GTGCAG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	681
BsrDI	GCAATG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	344
Bst4CI	ACNGT	3 cut(s)	78, 341, 505
BstDEI	CTNAG	3 cut(s)	381, 668, 744
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	4 cut(s)	88, 130, 172, 175
BstV2I	GAAGAC	1 cut(s)	710
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	89
CviAII	CATG	1 cut(s)	278
DdeI	CTNAG	3 cut(s)	381, 668, 744
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
DraI	TTTAAA	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	1 cut(s)	281
FalI	AAGNNNNNCTT	4 cut(s)	154, 186, 578, 610
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	102, 144, 186, 189
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	4 cut(s)	102, 144, 186, 189
FspBI	CTAG	3 cut(s)	6, 345, 642
GluI	GCNGC	4 cut(s)	102, 144, 186, 189
Hin1II	CATG	1 cut(s)	281
HincII	GTYRAC	2 cut(s)	152, 167
HindII	GTYRAC	2 cut(s)	152, 167
HinfI	GANTC	3 cut(s)	56, 205, 727
HphI	GGTGA	4 cut(s)	66, 212, 371, 485
Hpy166II	GTNNAC	2 cut(s)	152, 167
Hpy188I	TCNGA	3 cut(s)	37, 214, 309
Hpy188III	TCNNGA	5 cut(s)	50, 134, 174, 518, 642
Hpy8I	GTNNAC	2 cut(s)	152, 167
HpyAV	CCTTC	6 cut(s)	110, 180, 527, 639, 648, 685
HpyCH4III	ACNGT	3 cut(s)	78, 341, 505
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	6 cut(s)	89, 104, 146, 161, 191, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	3 cut(s)	381, 668, 744
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	5 cut(s)	30, 99, 126, 159, 207
Lsp1109I	GCAGC	4 cut(s)	88, 130, 172, 175
LweI	GCATC	4 cut(s)	28, 200, 277, 342
MaeI	CTAG	3 cut(s)	6, 345, 642
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	4 cut(s)	25, 598, 712, 715
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	3 cut(s)	124, 479, 650
MlyI	GAGTC	2 cut(s)	199, 736
MnlI	CCTC	6 cut(s)	39, 46, 220, 447, 633, 705
MseI	TTAA	5 cut(s)	255, 414, 483, 597, 612
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	281
NspI	RCATGY	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	4 cut(s)	103, 145, 187, 190
PleI	GAGTC	2 cut(s)	199, 735
PpsI	GAGTC	2 cut(s)	199, 735
PsiI	TTATAA	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	328
SaqAI	TTAA	5 cut(s)	255, 414, 483, 597, 612
SatI	GCNGC	4 cut(s)	102, 144, 186, 189
Sau3AI	GATC	1 cut(s)	32
SchI	GAGTC	2 cut(s)	199, 736
SduI	GDGCHC	1 cut(s)	328
SfaNI	GCATC	4 cut(s)	28, 200, 277, 342
SfcI	CTRYAG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	124, 479, 650
SspMI	CTAG	3 cut(s)	6, 345, 642
SstI	GAGCTC	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	3 cut(s)	78, 341, 505
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	3 cut(s)	25, 31, 96
TasI	AATT	3 cut(s)	124, 479, 650
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	5 cut(s)	255, 414, 483, 597, 612
Tru9I	TTAA	5 cut(s)	255, 414, 483, 597, 612
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	4 cut(s)	101, 143, 185, 188
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	96
XapI	RAATTY	2 cut(s)	124, 479
XbaI	TCTAGA	1 cut(s)	641
XceI	RCATGY	1 cut(s)	281
XmaJI	CCTAGG	1 cut(s)	344
XspI	CTAG	3 cut(s)	6, 345, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.