Rh6CG231400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001143
Physical Location & Seq
Forward (+)
38897056 .. 38905346
8291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG231400.1

Sequence Viewer

Length: 261 bp
ATGGCTAGAGAGAAGAAGGTAGCTGCTCAGCCTCATCCAACCGCTTCAGGGCTTGAAGACTCTTCAACCACAACTTCACCTTCTGCTCCTCGGGAAATTGATGCTCGTCCTCCAGCAAAGAAGGCAGTTTTGGACATATTGTATTATTGTCCTAGAGCGAAGAAGGCAGTTTTGCACATATTATCAAAATCAAACTCTTCCTTCCTTCTGATGCCATTCTCTTCTCCTTTGATCCTTTTGTCAACACCTCGGGGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.26

Weight (kDa)

9.92

Isoelectric Point (pI)

66.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 2 cut(s) 56, 66
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AlwI GGATC 1 cut(s) 226
Ama87I CYCGRG 2 cut(s) 90, 249
ApeKI GCWGC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 69
AvaI CYCGRG 2 cut(s) 90, 249
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 10
BfaI CTAG 2 cut(s) 6, 153
BisI GCNGC 1 cut(s) 24
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 25
BmeT110I CYCGRG 2 cut(s) 90, 249
BmsI GCATC 2 cut(s) 91, 201
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 89, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 89, 248
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 10
BsiHKCI CYCGRG 2 cut(s) 90, 249
BslI CCNNNNNNNGG 1 cut(s) 48
BsoBI CYCGRG 2 cut(s) 90, 249
Bsp143I GATC 1 cut(s) 231
Bsp1720I GCTNAGC 1 cut(s) 27
BspACI CCGC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 40
BspPI GGATC 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 89, 248
BssMI GATC 1 cut(s) 231
Bst6I CTCTTC 3 cut(s) 67, 202, 226
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 122, 164
BstV1I GCAGC 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 34
CviJI RGCY 4 cut(s) 5, 23, 31, 52
CviKI_1 RGCY 4 cut(s) 5, 23, 31, 52
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Eam1104I CTCTTC 3 cut(s) 67, 202, 226
EarI CTCTTC 3 cut(s) 67, 202, 226
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 2 cut(s) 90, 249
FaiI YATR 2 cut(s) 137, 179
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 2 cut(s) 6, 153
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 96
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 6 cut(s) 10, 90, 115, 157, 211, 215
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 164
HpyF3I CTNAG 1 cut(s) 27
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 2 cut(s) 33, 126
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 2 cut(s) 91, 201
MaeI CTAG 2 cut(s) 6, 153
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 6 cut(s) 25, 54, 68, 172, 189, 213
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 4 cut(s) 42, 99, 120, 258
MseI TTAA 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 122, 164
NdeII GATC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 259
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 231
SchI GAGTC 1 cut(s) 53
SetI ASST 4 cut(s) 21, 25, 82, 250
SfaNI GCATC 2 cut(s) 91, 201
SgeI CNNG 8 cut(s) 18, 60, 65, 102, 104, 117, 125, 165
Sse9I AATT 1 cut(s) 96
SsiI CCGC 1 cut(s) 42
SspMI CTAG 2 cut(s) 6, 153
TasI AATT 1 cut(s) 96
Tru1I TTAA 1 cut(s) 259
Tru9I TTAA 1 cut(s) 259
TseI GCWGC 1 cut(s) 23
XspI CTAG 2 cut(s) 6, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.