FvH4_2g07133

Zinc finger BED domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001143
Physical Location & Seq
Reverse (-)
5894749 .. 5895558
810 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07133.t1

Sequence Viewer

Length: 810 bp
ATGGCTAGAGGGAAGAAAACACTGGTTCGTCCTCGACGAAGTGCTTCTGGTCTGCAGGCTTCTTCTAAAGCAACTTCTTCTCAACCGATTGGTCCTTCATCAGCAGCAAGTCGATCAACTCAACCTGCACTTCTCCTACCAGCTGGAAGTCAACCCACTCCTGCAAATCAACTTGATGTGACCCAACCTGATGCAGCCCAACCTGCTGCAAGCCAACCTGCAAGTGAAGCAGTTGCATCTACAGGGGAGATTGATTCTGAAACATCAGGTTTAAAACGAAGCTTTGTTTGGGAACATTTTATAGAGTATGAAAAGATTGAAACTGTGAAAGATGTCAATGGAAAAGATTATCAGATAGTTTATAAGAGGGCTTACTGCAAATATTGTCCTAGGGGAAAGATTGGGGATTATGCTTGTGAAAGTCAGAATGGCATGTCTGGTATGATTAGGCACATTAATCAGAATTGTAGATATTTTCCATCAATTGTCGATAAGTCGCAGAAAAACTTACAAGGTTATAAGACTAGGGCTAATACACTGAGCTTGGTAGTTGTTGACCAAGATGATTATTTAGAAGCTTGTGTAGAGATGGTTGTAATTGATGAGCAGCCATTTAGTTTCGTGGAGAAGAAAGACTTTAAGGGATTTTATGATAGAGTCTATCCTCTGTGTGATGTTCCCTCTAGAAGAAAATTATGTAGAGCCTTTCTAGATATGCAAGGCACCCTGAAAAAGGAGTTGAAAAGGACTTTGAAGAAGTTGAGGGTGAATTTAACCATAGACACTTGGACGAGTGTGCCATTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

270

Amino Acids

30.01

Weight (kDa)

9.17

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 363, 519
Acc36I ACCTGC 3 cut(s) 133, 211, 226
AccB1I GGYRCC 1 cut(s) 722
AcsI RAATTY 1 cut(s) 769
AfiI CCNNNNNNNGG 1 cut(s) 733
AgsI TTSAA 3 cut(s) 320, 742, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 271, 303
AluBI AGCT 4 cut(s) 143, 282, 543, 578
AluI AGCT 4 cut(s) 143, 282, 543, 578
ApeKI GCWGC 4 cut(s) 104, 194, 206, 607
ApoI RAATTY 1 cut(s) 769
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 43
AspA2I CCTAGG 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 778
AvaII GGWCC 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 389
BanI GGYRCC 1 cut(s) 722
BbvI GCAGC 4 cut(s) 116, 193, 206, 619
BccI CCATC 2 cut(s) 487, 583
BfaI CTAG 5 cut(s) 6, 390, 525, 684, 710
BfmI CTRYAG 2 cut(s) 53, 240
BfuAI ACCTGC 3 cut(s) 133, 211, 226
BisI GCNGC 4 cut(s) 105, 195, 207, 608
BlnI CCTAGG 1 cut(s) 389
BlsI GCNGC 4 cut(s) 106, 196, 208, 609
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 724
BmsI GCATC 2 cut(s) 181, 245
BsaJI CCNNGG 1 cut(s) 389
Bsc4I CCNNNNNNNGG 1 cut(s) 733
Bse1I ACTGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 733
BseMII CTCAG 1 cut(s) 530
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 4 cut(s) 116, 193, 206, 619
BsgI GTGCAG 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 722
BslI CCNNNNNNNGG 1 cut(s) 733
Bsp143I GATC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 724
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 3 cut(s) 133, 211, 226
BspT107I GGYRCC 1 cut(s) 722
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 389
Bst4CI ACNGT 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 57, 211
BstDEI CTNAG 1 cut(s) 539
BstENI CCTNNNNNAGG 1 cut(s) 731
BstKTI GATC 1 cut(s) 116
BstMBI GATC 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 203, 227
BstNSI RCATGY 1 cut(s) 436
BstSFI CTRYAG 2 cut(s) 53, 240
BstV1I GCAGC 4 cut(s) 116, 193, 206, 619
BtsIMutI CAGTG 2 cut(s) 20, 536
BveI ACCTGC 3 cut(s) 133, 211, 226
Cac8I GCNNGC 2 cut(s) 57, 211
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 1 cut(s) 433
DdeI CTNAG 1 cut(s) 539
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
DraI TTTAAA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoT14I CCWWGG 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 389
FaeI CATG 1 cut(s) 436
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FatI CATG 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 105, 195, 207, 608
Fsp4HI GCNGC 4 cut(s) 105, 195, 207, 608
FspBI CTAG 5 cut(s) 6, 390, 525, 684, 710
GluI GCNGC 4 cut(s) 105, 195, 207, 608
Hin1II CATG 1 cut(s) 436
HincII GTYRAC 2 cut(s) 152, 556
HindII GTYRAC 2 cut(s) 152, 556
HindIII AAGCTT 2 cut(s) 280, 576
HinfI GANTC 2 cut(s) 254, 657
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 2 cut(s) 152, 556
Hpy188I TCNGA 4 cut(s) 259, 354, 426, 462
Hpy188III TCNNGA 2 cut(s) 684, 710
Hpy8I GTNNAC 2 cut(s) 152, 556
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 9 cut(s) 55, 128, 164, 194, 209, 221, 236, 378, 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 227
HpyF3I CTNAG 1 cut(s) 539
Hsp92II CATG 1 cut(s) 436
Kzo9I GATC 1 cut(s) 113
Lsp1109I GCAGC 4 cut(s) 116, 193, 206, 619
LweI GCATC 2 cut(s) 181, 245
MaeI CTAG 5 cut(s) 6, 390, 525, 684, 710
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 6 cut(s) 25, 54, 69, 640, 699, 766
MfeI CAATTG 1 cut(s) 483
MluCI AATT 5 cut(s) 463, 483, 597, 692, 769
MlyI GAGTC 1 cut(s) 666
MnlI CCTC 5 cut(s) 42, 360, 675, 691, 756
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 5 cut(s) 272, 456, 639, 773, 808
MspA1I CMGCKG 1 cut(s) 143
MunI CAATTG 1 cut(s) 483
MwoI GCNNNNNNNGC 2 cut(s) 203, 227
NdeII GATC 1 cut(s) 113
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 1 cut(s) 724
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 4 cut(s) 106, 196, 208, 609
PleI GAGTC 1 cut(s) 665
PpsI GAGTC 1 cut(s) 665
PshBI ATTAAT 1 cut(s) 456
PsiI TTATAA 2 cut(s) 363, 519
PspN4I GGNNCC 1 cut(s) 724
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 143
SaqAI TTAA 5 cut(s) 272, 456, 639, 773, 808
SatI GCNGC 4 cut(s) 105, 195, 207, 608
Sau3AI GATC 1 cut(s) 113
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 666
SfaNI GCATC 2 cut(s) 181, 245
SfcI CTRYAG 2 cut(s) 53, 240
SinI GGWCC 1 cut(s) 92
Sse9I AATT 5 cut(s) 463, 483, 597, 692, 769
SspI AATATT 1 cut(s) 383
SspMI CTAG 5 cut(s) 6, 390, 525, 684, 710
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 3 cut(s) 34, 112, 489
TasI AATT 5 cut(s) 463, 483, 597, 692, 769
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 5 cut(s) 272, 456, 639, 773, 808
Tru9I TTAA 5 cut(s) 272, 456, 639, 773, 808
TscAI CASTG 2 cut(s) 27, 543
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 4 cut(s) 104, 194, 206, 607
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 87, 324
TspRI CASTG 2 cut(s) 27, 543
VpaK11BI GGWCC 1 cut(s) 92
VspI ATTAAT 1 cut(s) 456
XagI CCTNNNNNAGG 1 cut(s) 731
XapI RAATTY 1 cut(s) 769
XbaI TCTAGA 2 cut(s) 683, 709
XceI RCATGY 1 cut(s) 436
XmaJI CCTAGG 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 5 cut(s) 6, 390, 525, 684, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.