Rh5DG152300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
15481834 .. 15484675
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG152300.1

Sequence Viewer

Length: 309 bp
ATGGCTAGAGCGAAGAAGGTAGCTGCTCGGCCTCATCCAACAGCTTCGGGGCTTGAAGACTCTTCAACCGCAACTTCACCTTCTGCTCCTCGGGAAATTGAAGCTCTTCCTCCAGCAAGTTCAACCGAGCAAGCTCTTACGGGTTCAAACCAGCAAGTTCCTACTCCTGCAAGTGATGAAGCTCCTGCACAAGTTCCTACTACTGCAACTCAAAGTCAGAATTCTAATCCGACTTTAATTTCTTGTTTAAGACCTGCTGGACTTTTTGTTGAATTCATGAATTGGTTTATGTGTTTATTCATTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.79

Weight (kDa)

5.16

Isoelectric Point (pI)

67.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AciI CCGC 1 cut(s) 69
AcsI RAATTY 2 cut(s) 220, 272
AgsI TTSAA 6 cut(s) 56, 66, 101, 123, 147, 272
AluBI AGCT 5 cut(s) 23, 44, 104, 134, 182
AluI AGCT 5 cut(s) 23, 44, 104, 134, 182
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 2 cut(s) 220, 272
Asp700I GAANNNNTTC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 10
BfaI CTAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 262
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 90
BsnI GGCC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 90
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 31
BspHI TCATGA 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 67, 111
BstC8I GCNNGC 1 cut(s) 132
BstF5I GGATG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 276
CviAII CATG 1 cut(s) 277
CviJI RGCY 8 cut(s) 5, 23, 31, 44, 52, 104, 134, 182
CviKI_1 RGCY 8 cut(s) 5, 23, 31, 44, 52, 104, 134, 182
Eam1104I CTCTTC 2 cut(s) 67, 111
EarI CTCTTC 2 cut(s) 67, 111
Eco88I CYCGRG 1 cut(s) 90
EcoRI GAATTC 2 cut(s) 220, 272
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 278, 290
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 31
Hin1II CATG 1 cut(s) 280
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 219, 231
Hpy188III TCNNGA 2 cut(s) 92, 277
HpyAV CCTTC 2 cut(s) 10, 90
HpyCH4V TGCA 3 cut(s) 170, 188, 206
Hsp92II CATG 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 91, 187
LpnPI CCDG 6 cut(s) 126, 164, 180, 198, 243, 267
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 1 cut(s) 6
MboII GAAGA 4 cut(s) 25, 54, 68, 98
MluCI AATT 5 cut(s) 96, 220, 237, 272, 280
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 62, 254
MnlI CCTC 3 cut(s) 42, 99, 120
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 2 cut(s) 236, 248
NlaIII CATG 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 7
PagI TCATGA 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 236, 248
SatI GCNGC 1 cut(s) 24
SchI GAGTC 1 cut(s) 53
SetI ASST 8 cut(s) 21, 25, 46, 82, 106, 136, 184, 256
Sse9I AATT 5 cut(s) 96, 220, 237, 272, 280
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 6
TasI AATT 5 cut(s) 96, 220, 237, 272, 280
Tru1I TTAA 2 cut(s) 236, 248
Tru9I TTAA 2 cut(s) 236, 248
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 4 cut(s) 192, 265, 289, 293
XapI RAATTY 2 cut(s) 220, 272
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.