Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8316865.1

Orthogroup ID

OG0001143

Physical Location & Seq

Genomic Coordinates Forward (+)

65 .. 935

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8316865.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 329 bp

atgaaccacagatccttgaagcaccccaatattgttgaatttaaagaggtcctgctgacaccaactcatctaggtatagtaatggagtatgctgcaggaggagaactgtatgagagaatttgcaaggctggtaaatttagtgagaatgaggcaaggtttttcttccagcaattgatatcaggacttacgtactgtcataaaatgcatatatgtcatagagatcttaagcttgaaaattcactcttagatggcggcacaacacctcgtgtgaaaatatgcgatttcggatactcaaaggtatttcacagaacccatgatctttcaatttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

109

Amino Acids

12.58

Weight (kDa)

8.39

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11373
fragaria_vesca	FvH4_1g22411 FvH4_2g07133 FvH4_3g15421 FvH4_3g19231 FvH4_3g30932 FvH4_4g03321 FvH4_4g06192 FvH4_5g30172 FvH4_6g16042 FvH4_6g40821
malus_domestica	MD17G1275100.v1.1
pyrus_communis	pycom04g00150 pycom10g21350 pycom11g27220 pycom1242g00110 pycom12g10400
rosa_chinensis	RchiOBHm_Chr1g0320071 RchiOBHm_Chr1g0320401 RchiOBHm_Chr2g0096561 RchiOBHm_Chr2g0162861 RchiOBHm_Chr3g0449891 RchiOBHm_Chr5g0023951 RchiOBHm_Chr7g0196761 RchiOBHm_Chr7g0220051
rosa_laevigata	RLG00000029746
rosa_multiflora	Rmu_co8244943.1_g000001 Rmu_co8316865.1_g000001 Rmu_sc0000266.1_g000014 Rmu_sc0000556.1_g000020 Rmu_sc0001043.1_g000011 Rmu_sc0001362.1_g000013 Rmu_sc0003226.1_g000045 Rmu_sc0006536.1_g000001 Rmu_sc0006986.1_g000019 Rmu_sc0007085.1_g000008 Rmu_sc0009431.1_g000007 Rmu_sc0011512.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021980 Rroxscaffold_3G00228880 Rroxscaffold_4G00319880 Rroxscaffold_6G00400050
rosa_rugosa	Rorug04G0051500 Rorug04G0051600 Rorug06G0042300
rosa_samantha	Rh2CG075900 Rh3CG022500 Rh3DG023400 Rh3DG200000 Rh3DG328700 Rh4AG008700 Rh4BG374400 Rh5DG152300 Rh6CG231400 Rh6CG508000 Rh7BG318300 Rh7DG384800
rosa_wichuraiana	Rw0G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	6
AcsI	RAATTY	4 cut(s)	38, 117, 134, 235
AdeI	CACNNNGTG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	191
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	4 cut(s)	19, 38, 233, 324
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
AlwI	GGATC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	4 cut(s)	38, 117, 134, 235
AspS9I	GGNCC	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	49
BauI	CACGAG	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	242
BciVI	GTATCC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	2 cut(s)	93, 253
BlsI	GCNGC	2 cut(s)	94, 254
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	11, 220, 316
BspACI	CCGC	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	6
BspTI	CTTAAG	1 cut(s)	224
BssMI	GATC	3 cut(s)	11, 220, 316
BssSI	CACGAG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	108, 194
BstAFI	CTTAAG	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	244
BstKTI	GATC	3 cut(s)	14, 223, 319
BstMBI	GATC	3 cut(s)	11, 220, 316
BstSFI	CTRYAG	1 cut(s)	93
BstSNI	TACGTA	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	11, 220
BstYI	RGATCY	2 cut(s)	11, 220
BsuI	GTATCC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	2 cut(s)	128, 229
CviKI_1	RGCY	2 cut(s)	128, 229
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	3 cut(s)	13, 222, 318
DpnII	GATC	3 cut(s)	11, 220, 316
DraI	TTTAAA	1 cut(s)	43
DraIII	CACNNNGTG	1 cut(s)	266
Eco105I	TACGTA	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	207
FaeI	CATG	1 cut(s)	317
FatI	CATG	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	93, 253
Fsp4HI	GCNGC	2 cut(s)	93, 253
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	2 cut(s)	93, 253
Hin1II	CATG	1 cut(s)	317
HindIII	AAGCTT	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	1 cut(s)	180
HpyCH4III	ACNGT	2 cut(s)	108, 194
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	3 cut(s)	95, 123, 205
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	317
Kzo9I	GATC	3 cut(s)	11, 220, 316
LpnPI	CCDG	5 cut(s)	65, 81, 114, 165, 179
Lsp1109I	GCAGC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	188
MalI	GATC	3 cut(s)	13, 222, 318
MboI	GATC	3 cut(s)	11, 220, 316
MboII	GAAGA	1 cut(s)	154
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	2 cut(s)	11, 220
MluCI	AATT	6 cut(s)	38, 117, 134, 170, 235, 324
MnlI	CCTC	4 cut(s)	40, 92, 142, 273
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	2 cut(s)	42, 225
MspCI	CTTAAG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	170
NdeII	GATC	3 cut(s)	11, 220, 316
NlaIII	CATG	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	94, 254
Ppu21I	YACGTR	1 cut(s)	189
PpuMI	RGGWCCY	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	11, 220
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	42, 225
SatI	GCNGC	2 cut(s)	93, 253
Sau3AI	GATC	3 cut(s)	11, 220, 316
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	7 cut(s)	51, 76, 158, 191, 231, 265, 300
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SnaBI	TACGTA	1 cut(s)	189
Sse9I	AATT	6 cut(s)	38, 117, 134, 170, 235, 324
SsiI	CCGC	1 cut(s)	252
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	108, 194
TaiI	ACGT	1 cut(s)	191
TasI	AATT	6 cut(s)	38, 117, 134, 170, 235, 324
TauI	GCSGC	1 cut(s)	255
Tru1I	TTAA	2 cut(s)	42, 225
Tru9I	TTAA	2 cut(s)	42, 225
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	4 cut(s)	38, 117, 134, 235
XspI	CTAG	1 cut(s)	71
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.