AT4G34790

Auxin-induced protein 15A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0019120
Physical Location & Seq
Forward (+)
16594362 .. 16595153
792 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34790.1

Sequence Viewer

Length: 327 bp
ATGGGTTTAATGAGGTCGATGCTTCCAAATGCAAAGCAAATCTTCAAATCACAATCTATGAGGAACAAGAACGGATCATCCTCACCATCAACAACAACAACAACTTCAGGGCTTGTTCCGAAAGGTCACGTAGCGGTTTACGTTGGAGAACAAATGGAGAAGAAGAGGTTTGTGGTTCCAATATCATACTTGAACCATCCTTTGTTCAGAGAATTTCTTAATCGCGCTGAGGAAGAATGCGGATTTCATCACTCTATGGGTGGCTTGACGATACCTTGTCGAGAAGAGTCGTTTCTTTATCTCATTACTTCTCATCAGCTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

108

Amino Acids

12.21

Weight (kDa)

9.34

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 12 - 103 1.2e-27 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34790 AT4G34800 AT4G34810
fragaria_vesca FvH4_2g02280
malus_domestica MD05G1113700.v1.1
prunus_persica Prupe.8G158200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0245711 RchiOBHm_Chr6g0245761

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 225
AciI CCGC 2 cut(s) 134, 240
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 90
AgsI TTSAA 2 cut(s) 46, 193
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
AlwI GGATC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 212
AspLEI GCGC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 306
BccI CCATC 2 cut(s) 94, 204
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 130
BseGI GGATG 2 cut(s) 77, 196
BseMII CTCAG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 225
BsmI GAATGC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 74
BspACI CCGC 2 cut(s) 134, 240
BspCNI CTCAG 1 cut(s) 220
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 1 cut(s) 82
BssMI GATC 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 158, 279
BstBAI YACGTR 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 77, 196
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 77
BstMBI GATC 1 cut(s) 74
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 306
BtsCI GGATG 2 cut(s) 77, 196
CfoI GCGC 1 cut(s) 227
CviJI RGCY 3 cut(s) 112, 264, 319
CviKI_1 RGCY 3 cut(s) 112, 264, 319
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 158, 279
EarI CTCTTC 2 cut(s) 158, 279
Eco57I CTGAAG 1 cut(s) 90
FaiI YATR 3 cut(s) 59, 187, 257
FalI AAGNNNNNCTT 2 cut(s) 26, 58
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 2 cut(s) 64, 183
Fsp4HI GCNGC 1 cut(s) 320
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 320
HhaI GCGC 1 cut(s) 227
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 1 cut(s) 287
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 120, 209
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4IV ACGT 2 cut(s) 129, 141
HpyCH4V TGCA 2 cut(s) 32, 322
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 2 cut(s) 129, 141
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 74
LpnPI CCDG 1 cut(s) 93
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 1 cut(s) 9
MaeII ACGT 2 cut(s) 129, 141
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 5 cut(s) 34, 172, 175, 245, 296
MluCI AATT 1 cut(s) 212
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 5 cut(s) 6, 54, 91, 159, 223
MseI TTAA 2 cut(s) 8, 219
MspA1I CMGCKG 1 cut(s) 319
Mva1269I GAATGC 1 cut(s) 242
MvnI CGCG 1 cut(s) 225
NdeII GATC 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 125
PctI GAATGC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 319
SaqAI TTAA 2 cut(s) 8, 219
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 1 cut(s) 74
SchI GAGTC 1 cut(s) 296
SetI ASST 7 cut(s) 17, 127, 132, 144, 170, 277, 321
SfaNI GCATC 1 cut(s) 9
SgeI CNNG 9 cut(s) 79, 120, 125, 140, 202, 236, 277, 288, 293
Sse9I AATT 1 cut(s) 212
SsiI CCGC 2 cut(s) 134, 240
TaiI ACGT 2 cut(s) 132, 144
TaqI TCGA 2 cut(s) 17, 280
TasI AATT 1 cut(s) 212
Tru1I TTAA 2 cut(s) 8, 219
Tru9I TTAA 2 cut(s) 8, 219
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 87
XapI RAATTY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.