AT4G34800

Auxin-induced protein 15A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0019120
Physical Location & Seq
Forward (+)
16596640 .. 16597368
729 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34800.1

Sequence Viewer

Length: 285 bp
ATGGCGATTAGATTGTCGCGTGTGATCAACTCTAAACAGTCCCAAAAACAGCAATCTCGAGTCCCGAAAGGACATGTTGCGGTTTATGTCGGAGAAGAGATGGAGAGCAAGAAGAGATTCGTGGTTCCGATTTCGTATTTGAACCATCCTTCATTTCAAGGTTTGCTTAGTAGAGCAGAGGAAGAGTTTGGTTTCAATCATCCAATCGGTGGATTAACGATTCCATGCAGAGAAGAAACATTTGTTGGTCTTTTGAATTCTTATGGTTGTATTGTTTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

94

Amino Acids

10.52

Weight (kDa)

9.1

Isoelectric Point (pI)

56.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 11 - 85 3.6e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34790 AT4G34800 AT4G34810
fragaria_vesca FvH4_2g02280
malus_domestica MD05G1113700.v1.1
prunus_persica Prupe.8G158200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0245711 RchiOBHm_Chr6g0245761

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AccII CGCG 1 cut(s) 19
AciI CCGC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 5 cut(s) 142, 158, 196, 256, 279
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
Ama87I CYCGRG 1 cut(s) 57
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 57
BccI CCATC 2 cut(s) 94, 153
BclI TGATCA 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 145, 199
BseLI CCNNNNNNNGG 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 57
BslFI GGGAC 2 cut(s) 25, 47
BslI CCNNNNNNNGG 1 cut(s) 209
BsmFI GGGAC 2 cut(s) 25, 47
BsoBI CYCGRG 1 cut(s) 57
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 1 cut(s) 80
BspFNI CGCG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 126
BssMI GATC 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 3 cut(s) 90, 107, 177
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 145, 199
BstFNI CGCG 1 cut(s) 19
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 77
BstUI CGCG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 145, 199
CviAII CATG 2 cut(s) 74, 225
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eam1104I CTCTTC 3 cut(s) 90, 107, 177
EarI CTCTTC 3 cut(s) 90, 107, 177
Eco88I CYCGRG 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 256
FaeI CATG 2 cut(s) 77, 228
FaiI YATR 4 cut(s) 75, 87, 226, 264
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 2 cut(s) 25, 47
FatI CATG 2 cut(s) 73, 224
FbaI TGATCA 1 cut(s) 24
FokI GGATG 2 cut(s) 132, 186
Hin1II CATG 2 cut(s) 77, 228
HinfI GANTC 3 cut(s) 60, 117, 220
Hpy188I TCNGA 2 cut(s) 92, 129
Hpy188III TCNNGA 2 cut(s) 57, 64
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 2 cut(s) 77, 228
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 1 cut(s) 24
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 4 cut(s) 107, 124, 194, 245
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 1 cut(s) 215
MvnI CGCG 1 cut(s) 19
NdeII GATC 1 cut(s) 24
NlaIII CATG 2 cut(s) 77, 228
NlaIV GGNNCC 1 cut(s) 126
NspI RCATGY 1 cut(s) 77
PaeR7I CTCGAG 1 cut(s) 57
PciI ACATGT 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 117, 220
PflMI CCANNNNNTGG 1 cut(s) 209
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PscI ACATGT 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 215
Sau3AI GATC 1 cut(s) 24
SchI GAGTC 1 cut(s) 69
SetI ASST 1 cut(s) 163
Sfr274I CTCGAG 1 cut(s) 57
SlaI CTCGAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 1 cut(s) 256
SsiI CCGC 1 cut(s) 80
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 58
TasI AATT 1 cut(s) 256
TfiI GAWTC 2 cut(s) 117, 220
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 209
XapI RAATTY 1 cut(s) 256
XceI RCATGY 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.