FvH4_2g02280

Auxin-induced protein 15A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0019120
Physical Location & Seq
Reverse (-)
1888940 .. 1889311
372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02280.t1

Sequence Viewer

Length: 372 bp
ATGGGTTTACTTCGTCTGCCTTCGTTGATGCACAATGTGAAGCACATTCTGAGAGCCAAGTCCTACAACCATGAAGTTCCGAAAGGGCATGTTGCAATTTATGTGGGAGAGCAAATTGGGAAGAAGAGGTATGTGGTGCCGGTGTCTTACTTGAACCACCCTTCATTCAAGGACCTGCTTAAGAAAGCTGAAGATGAGTTTGGCTTCAATCACCCGATGGGAGGTCTCACAATTCCCTGCAGAGAGGAGACCTTTCTTGATCTTATTGCTTCTGAGCTAGCAGCTGGGATCGGTGATGATCAAATGTTCTACAATTTTGACACTTCTTTTGCTTTAGTTGCTAGGTTAGCCAGTTGGGTTTTAGACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

124

Amino Acids

13.95

Weight (kDa)

6.58

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 90 1.6e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019120)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34790 AT4G34800 AT4G34810
fragaria_vesca FvH4_2g02280
malus_domestica MD05G1113700.v1.1
prunus_persica Prupe.8G158200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0245711 RchiOBHm_Chr6g0245761

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 136
AclWI GGATC 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 221
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 3 cut(s) 154, 169, 208
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 3 cut(s) 188, 277, 284
AluI AGCT 3 cut(s) 188, 277, 284
Alw26I GTCTC 2 cut(s) 230, 242
AlwI GGATC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 203, 305
AsuNHI GCTAGC 1 cut(s) 277
AvaII GGWCC 1 cut(s) 172
BanI GGYRCC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 211
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 230, 242
BfaI CTAG 2 cut(s) 278, 342
BfmI CTRYAG 1 cut(s) 238
BfrI CTTAAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 183
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 1 cut(s) 18
BmtI GCTAGC 1 cut(s) 281
BsaI GGTCTC 2 cut(s) 230, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 351, 371
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 41, 264
BseNI ACTGG 2 cut(s) 351, 371
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 2 cut(s) 230, 242
Bso31I GGTCTC 2 cut(s) 230, 242
Bsp143I GATC 3 cut(s) 259, 288, 298
BspCNI CTCAG 2 cut(s) 42, 265
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 242
BspMI ACCTGC 1 cut(s) 183
BspOI GCTAGC 1 cut(s) 281
BspPI GGATC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 136
BspTI CTTAAG 1 cut(s) 179
BspTNI GGTCTC 2 cut(s) 230, 242
BsrFI RCCGGY 1 cut(s) 139
BsrI ACTGG 2 cut(s) 351, 371
BssAI RCCGGY 1 cut(s) 139
BssMI GATC 3 cut(s) 259, 288, 298
Bst6I CTCTTC 1 cut(s) 119
BstAFI CTTAAG 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 50, 273
BstKTI GATC 3 cut(s) 262, 291, 301
BstMAI GTCTC 2 cut(s) 230, 242
BstMBI GATC 3 cut(s) 259, 288, 298
BstMWI GCNNNNNNNGC 2 cut(s) 338, 347
BstNSI RCATGY 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 293
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 172
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviAII CATG 2 cut(s) 71, 89
CviJI RGCY 6 cut(s) 56, 188, 204, 277, 284, 350
CviKI_1 RGCY 6 cut(s) 56, 188, 204, 277, 284, 350
DdeI CTNAG 2 cut(s) 50, 273
DpnI GATC 3 cut(s) 261, 290, 300
DpnII GATC 3 cut(s) 259, 288, 298
DraIII CACNNNGTG 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco31I GGTCTC 2 cut(s) 230, 242
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 172
FaeI CATG 2 cut(s) 74, 92
FaiI YATR 4 cut(s) 72, 90, 102, 132
FatI CATG 2 cut(s) 70, 88
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 2 cut(s) 278, 342
GluI GCNGC 1 cut(s) 282
GsaI CCCAGC 1 cut(s) 288
HapII CCGG 1 cut(s) 140
Hin1II CATG 2 cut(s) 74, 92
HpaII CCGG 1 cut(s) 140
HphI GGTGA 2 cut(s) 203, 305
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 3 cut(s) 51, 81, 274
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 2 cut(s) 30, 171
HpyCH4V TGCA 3 cut(s) 31, 95, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 347
HpyF3I CTNAG 2 cut(s) 50, 273
Hsp92II CATG 2 cut(s) 74, 92
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 259, 288, 298
LpnPI CCDG 6 cut(s) 153, 188, 250, 270, 352, 364
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 18
MaeI CTAG 2 cut(s) 278, 342
MalI GATC 3 cut(s) 261, 290, 300
MboI GATC 3 cut(s) 259, 288, 298
MboII GAAGA 3 cut(s) 133, 136, 203
MluCI AATT 4 cut(s) 96, 114, 231, 313
MnlI CCTC 3 cut(s) 120, 215, 238
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 284
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 338, 347
NdeII GATC 3 cut(s) 259, 288, 298
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 2 cut(s) 74, 92
NlaIV GGNNCC 1 cut(s) 138
NspI RCATGY 1 cut(s) 92
PkrI GCNGC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 172
PspPPI RGGWCCY 1 cut(s) 172
PstI CTGCAG 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 3 cut(s) 259, 288, 298
Sau96I GGNCC 1 cut(s) 172
SetI ASST 8 cut(s) 131, 177, 190, 226, 254, 279, 286, 347
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 172
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 4 cut(s) 96, 114, 231, 313
SspMI CTAG 2 cut(s) 278, 342
TasI AATT 4 cut(s) 96, 114, 231, 313
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 87, 153
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 172
XceI RCATGY 1 cut(s) 92
XspI CTAG 2 cut(s) 278, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.