Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 19 - 181 | 1.8e-41 | TIR domain |
| TIR_2 | PF13676 | 21 - 116 | 4.9e-10 | TIR domain |
| NB-ARC | PF00931 | 219 - 388 | 1.1e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 458 - 524 | 7.7e-06 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 630 - 649 | 7.3e-06 | Leucine Rich Repeat |
| LRR_14 | PF23598 | 743 - 818 | 4.7e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 977 - 1121 | 2.6e-13 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3311 |
| AatII | GACGTC | 1 cut(s) | 2572 |
| Acc16I | TGCGCA | 1 cut(s) | 1721 |
| Acc36I | ACCTGC | 3 cut(s) | 1914, 2767, 3311 |
| AccI | GTMKAC | 3 cut(s) | 245, 1553, 3133 |
| AccII | CGCG | 3 cut(s) | 221, 1588, 2149 |
| AccIII | TCCGGA | 1 cut(s) | 1795 |
| AclWI | GGATC | 7 cut(s) | 224, 581, 855, 1497, 2970, 2983, 3173 |
| AcsI | RAATTY | 8 cut(s) | 1502, 1739, 1847, 2207, 2348, 2789, 3299, 3525 |
| AcuI | CTGAAG | 5 cut(s) | 636, 1479, 1646, 1697, 3011 |
| AcyI | GRCGYC | 1 cut(s) | 2569 |
| AfaI | GTAC | 5 cut(s) | 612, 1133, 1705, 2946, 3356 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 129, 647, 740, 2985 |
| AflII | CTTAAG | 3 cut(s) | 665, 2578, 2762 |
| AflIII | ACRYGT | 3 cut(s) | 381, 1665, 3128 |
| AhlI | ACTAGT | 2 cut(s) | 758, 3212 |
| AjiI | CACGTC | 1 cut(s) | 2540 |
| AjnI | CCWGG | 4 cut(s) | 204, 733, 2211, 2932 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1676, 1708 |
| AleI | CACNNNNGTG | 1 cut(s) | 3007 |
| Alw21I | GWGCWC | 3 cut(s) | 1932, 2057, 3101 |
| Alw26I | GTCTC | 5 cut(s) | 1113, 1374, 2033, 2138, 3177 |
| Alw44I | GTGCAC | 2 cut(s) | 2053, 3097 |
| AlwI | GGATC | 7 cut(s) | 224, 581, 855, 1497, 2970, 2983, 3173 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2299 |
| Ama87I | CYCGRG | 2 cut(s) | 196, 1004 |
| Aor13HI | TCCGGA | 1 cut(s) | 1795 |
| AoxI | GGCC | 2 cut(s) | 2551, 2754 |
| ApaLI | GTGCAC | 2 cut(s) | 2053, 3097 |
| ApeKI | GCWGC | 4 cut(s) | 52, 620, 2721, 3449 |
| ApoI | RAATTY | 8 cut(s) | 1502, 1739, 1847, 2207, 2348, 2789, 3299, 3525 |
| AseI | ATTAAT | 1 cut(s) | 2547 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 98 |
| AspA2I | CCTAGG | 1 cut(s) | 2353 |
| AspLEI | GCGC | 4 cut(s) | 223, 371, 1624, 1722 |
| AspS9I | GGNCC | 2 cut(s) | 1099, 2755 |
| AsuC2I | CCSGG | 1 cut(s) | 2138 |
| AsuHPI | GGTGA | 8 cut(s) | 425, 906, 1078, 2176, 2227, 2296, 2791, 3335 |
| AvaI | CYCGRG | 2 cut(s) | 196, 1004 |
| AvaII | GGWCC | 1 cut(s) | 1099 |
| AvrII | CCTAGG | 1 cut(s) | 2353 |
| BaeGI | GKGCMC | 2 cut(s) | 2057, 3101 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1687, 1720 |
| BamHI | GGATCC | 1 cut(s) | 2975 |
| BanII | GRGCYC | 1 cut(s) | 1932 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3385, 3417 |
| BauI | CACGAG | 3 cut(s) | 2056, 2076, 2128 |
| BbsI | GAAGAC | 1 cut(s) | 55 |
| Bbv12I | GWGCWC | 3 cut(s) | 1932, 2057, 3101 |
| BbvI | GCAGC | 4 cut(s) | 64, 607, 2708, 3436 |
| BccI | CCATC | 8 cut(s) | 117, 128, 332, 512, 838, 1072, 2243, 3308 |
| BceAI | ACGGC | 2 cut(s) | 1595, 1628 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 295, 329, 2556, 2590 |
| BciT130I | CCWGG | 4 cut(s) | 206, 735, 2213, 2934 |
| BciVI | GTATCC | 2 cut(s) | 697, 1942 |
| BclI | TGATCA | 1 cut(s) | 2595 |
| BcnI | CCSGG | 1 cut(s) | 2138 |
| BcoDI | GTCTC | 5 cut(s) | 1113, 1374, 2033, 2138, 3177 |
| BcuI | ACTAGT | 2 cut(s) | 758, 3212 |
| BfmI | CTRYAG | 1 cut(s) | 1744 |
| BfoI | RGCGCY | 1 cut(s) | 372 |
| BfrI | CTTAAG | 3 cut(s) | 665, 2578, 2762 |
| BfuAI | ACCTGC | 3 cut(s) | 1914, 2767, 3311 |
| BfuI | GTATCC | 2 cut(s) | 697, 1942 |
| BglII | AGATCT | 3 cut(s) | 178, 2521, 2703 |
| BisI | GCNGC | 6 cut(s) | 50, 53, 621, 2722, 2999, 3450 |
| BlnI | CCTAGG | 1 cut(s) | 2353 |
| BlsI | GCNGC | 6 cut(s) | 51, 54, 622, 2723, 3000, 3451 |
| BmcAI | AGTACT | 1 cut(s) | 1133 |
| Bme1390I | CCNGG | 5 cut(s) | 206, 735, 2138, 2213, 2934 |
| Bme18I | GGWCC | 1 cut(s) | 1099 |
| BmeT110I | CYCGRG | 2 cut(s) | 196, 1004 |
| BmgBI | CACGTC | 1 cut(s) | 2540 |
| BmgT120I | GGNCC | 2 cut(s) | 1099, 2755 |
| BmiI | GGNNCC | 4 cut(s) | 1601, 1642, 2977, 3363 |
| BmrFI | CCNGG | 5 cut(s) | 206, 735, 2138, 2213, 2934 |
| BmrI | ACTGGG | 1 cut(s) | 1291 |
| BmuI | ACTGGG | 1 cut(s) | 1291 |
| BpiI | GAAGAC | 1 cut(s) | 55 |
| BpmI | CTGGAG | 3 cut(s) | 134, 1155, 2276 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1944 |
| BpuEI | CTTGAG | 7 cut(s) | 145, 1223, 1826, 1969, 2179, 2390, 3051 |
| BpuMI | CCSGG | 1 cut(s) | 2138 |
| BsaAI | YACGTR | 2 cut(s) | 1429, 2879 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3189 |
| BsaHI | GRCGYC | 1 cut(s) | 2569 |
| BsaJI | CCNNGG | 3 cut(s) | 76, 2353, 2751 |
| BsaWI | WCCGGW | 1 cut(s) | 1795 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 594, 624 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 129, 647, 740, 2985 |
| Bse1I | ACTGG | 5 cut(s) | 1022, 1117, 1172, 1286, 2385 |
| Bse3DI | GCAATG | 3 cut(s) | 2561, 2681, 3444 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3189 |
| BseAI | TCCGGA | 1 cut(s) | 1795 |
| BseBI | CCWGG | 4 cut(s) | 206, 735, 2213, 2934 |
| BseDI | CCNNGG | 3 cut(s) | 76, 2353, 2751 |
| BseJI | GATNNNNATC | 1 cut(s) | 3189 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 129, 647, 740, 2985 |
| BseMI | GCAATG | 3 cut(s) | 2561, 2681, 3444 |
| BseMII | CTCAG | 4 cut(s) | 196, 932, 1094, 2013 |
| BseNI | ACTGG | 5 cut(s) | 1022, 1117, 1172, 1286, 2385 |
| BseRI | GAGGAG | 4 cut(s) | 142, 627, 630, 2081 |
| BseSI | GKGCMC | 2 cut(s) | 2057, 3101 |
| BseXI | GCAGC | 4 cut(s) | 64, 607, 2708, 3436 |
| BseYI | CCCAGC | 1 cut(s) | 3452 |
| BsgI | GTGCAG | 1 cut(s) | 2358 |
| Bsh1236I | CGCG | 3 cut(s) | 221, 1588, 2149 |
| BshFI | GGCC | 2 cut(s) | 2553, 2756 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1932, 2057, 3101 |
| BsiHKCI | CYCGRG | 2 cut(s) | 196, 1004 |
| BsiSI | CCGG | 2 cut(s) | 1796, 2137 |
| BslFI | GGGAC | 4 cut(s) | 1299, 1815, 2479, 3139 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 129, 647, 740, 2985 |
| BsmAI | GTCTC | 5 cut(s) | 1113, 1374, 2033, 2138, 3177 |
| BsmFI | GGGAC | 4 cut(s) | 1299, 1815, 2479, 3139 |
| BsmI | GAATGC | 1 cut(s) | 2199 |
| BsnI | GGCC | 2 cut(s) | 2553, 2756 |
| BsoBI | CYCGRG | 2 cut(s) | 196, 1004 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1932, 2057, 3101 |
| Bsp13I | TCCGGA | 1 cut(s) | 1795 |
| Bsp19I | CCATGG | 1 cut(s) | 2751 |
| BspANI | GGCC | 2 cut(s) | 2553, 2756 |
| BspCNI | CTCAG | 4 cut(s) | 195, 933, 1095, 2014 |
| BspEI | TCCGGA | 1 cut(s) | 1795 |
| BspFNI | CGCG | 3 cut(s) | 221, 1588, 2149 |
| BspHI | TCATGA | 2 cut(s) | 811, 1185 |
| BspLI | GGNNCC | 4 cut(s) | 1601, 1642, 2977, 3363 |
| BspMI | ACCTGC | 3 cut(s) | 1914, 2767, 3311 |
| BspPI | GGATC | 7 cut(s) | 224, 581, 855, 1497, 2970, 2983, 3173 |
| BspQI | GCTCTTC | 1 cut(s) | 1920 |
| BspTI | CTTAAG | 3 cut(s) | 665, 2578, 2762 |
| BsrDI | GCAATG | 3 cut(s) | 2561, 2681, 3444 |
| BsrI | ACTGG | 5 cut(s) | 1022, 1117, 1172, 1286, 2385 |
| BssECI | CCNNGG | 3 cut(s) | 76, 2353, 2751 |
| BssNAI | GTATAC | 3 cut(s) | 246, 1554, 3134 |
| BssNI | GRCGYC | 1 cut(s) | 2569 |
| BssSI | CACGAG | 3 cut(s) | 2056, 2076, 2128 |
| BssT1I | CCWWGG | 2 cut(s) | 2353, 2751 |
| Bst1107I | GTATAC | 3 cut(s) | 246, 1554, 3134 |
| Bst2BI | CACGAG | 3 cut(s) | 2056, 2076, 2128 |
| Bst2UI | CCWGG | 4 cut(s) | 206, 735, 2213, 2934 |
| Bst4CI | ACNGT | 6 cut(s) | 98, 1474, 1551, 2740, 3083, 3392 |
| Bst6I | CTCTTC | 5 cut(s) | 672, 861, 1281, 1920, 3406 |
| BstACI | GRCGYC | 1 cut(s) | 2569 |
| BstAFI | CTTAAG | 3 cut(s) | 665, 2578, 2762 |
| BstBAI | YACGTR | 2 cut(s) | 1429, 2879 |
| BstC8I | GCNNGC | 6 cut(s) | 225, 1301, 1498, 2444, 2867, 2926 |
| BstDSI | CCRYGG | 1 cut(s) | 2751 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 127 |
| BstFNI | CGCG | 3 cut(s) | 221, 1588, 2149 |
| BstH2I | RGCGCY | 1 cut(s) | 372 |
| BstHHI | GCGC | 4 cut(s) | 223, 371, 1624, 1722 |
| BstMAI | GTCTC | 5 cut(s) | 1113, 1374, 2033, 2138, 3177 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 486, 495, 1214, 2097, 2773, 2995, 3041, 3441 |
| BstNI | CCWGG | 4 cut(s) | 206, 735, 2213, 2934 |
| BstNSI | RCATGY | 4 cut(s) | 244, 1401, 1669, 3132 |
| BstSCI | CCNGG | 5 cut(s) | 204, 733, 2136, 2211, 2932 |
| BstSFI | CTRYAG | 1 cut(s) | 1744 |
| BstSLI | GKGCMC | 2 cut(s) | 2057, 3101 |
| BstUI | CGCG | 3 cut(s) | 221, 1588, 2149 |
| BstV1I | GCAGC | 4 cut(s) | 64, 607, 2708, 3436 |
| BstV2I | GAAGAC | 1 cut(s) | 55 |
| BstX2I | RGATCY | 5 cut(s) | 178, 1489, 2521, 2703, 2975 |
| BstYI | RGATCY | 5 cut(s) | 178, 1489, 2521, 2703, 2975 |
| BstZ17I | GTATAC | 3 cut(s) | 246, 1554, 3134 |
| BsuI | GTATCC | 2 cut(s) | 697, 1942 |
| BsuRI | GGCC | 2 cut(s) | 2553, 2756 |
| BtgI | CCRYGG | 1 cut(s) | 2751 |
| BtgZI | GCGATG | 2 cut(s) | 504, 2905 |
| BtrI | CACGTC | 1 cut(s) | 2540 |
| BtsIMutI | CAGTG | 3 cut(s) | 1179, 1279, 1455 |
| BveI | ACCTGC | 3 cut(s) | 1914, 2767, 3311 |
| Cac8I | GCNNGC | 6 cut(s) | 225, 1301, 1498, 2444, 2867, 2926 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2299 |
| CciI | TCATGA | 2 cut(s) | 811, 1185 |
| CfoI | GCGC | 4 cut(s) | 223, 371, 1624, 1722 |
| Cfr13I | GGNCC | 2 cut(s) | 1099, 2755 |
| CseI | GACGC | 1 cut(s) | 2733 |
| Csp6I | GTAC | 5 cut(s) | 611, 1132, 1704, 2945, 3355 |
| CviQI | GTAC | 5 cut(s) | 611, 1132, 1704, 2945, 3355 |
| DraI | TTTAAA | 1 cut(s) | 444 |
| Eam1104I | CTCTTC | 5 cut(s) | 672, 861, 1281, 1920, 3406 |
| EarI | CTCTTC | 5 cut(s) | 672, 861, 1281, 1920, 3406 |
| EciI | GGCGGA | 2 cut(s) | 36, 1539 |
| Ecl136II | GAGCTC | 1 cut(s) | 1930 |
| Eco130I | CCWWGG | 2 cut(s) | 2353, 2751 |
| Eco24I | GRGCYC | 1 cut(s) | 1932 |
| Eco47I | GGWCC | 1 cut(s) | 1099 |
| Eco53kI | GAGCTC | 1 cut(s) | 1930 |
| Eco57I | CTGAAG | 5 cut(s) | 636, 1479, 1646, 1697, 3011 |
| Eco88I | CYCGRG | 2 cut(s) | 196, 1004 |
| EcoICRI | GAGCTC | 1 cut(s) | 1930 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 127 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1099 |
| EcoRI | GAATTC | 1 cut(s) | 2348 |
| EcoRII | CCWGG | 4 cut(s) | 204, 733, 2211, 2932 |
| EcoT14I | CCWWGG | 2 cut(s) | 2353, 2751 |
| EcoT22I | ATGCAT | 1 cut(s) | 1542 |
| EcoT38I | GRGCYC | 1 cut(s) | 1932 |
| ErhI | CCWWGG | 2 cut(s) | 2353, 2751 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 452, 484, 1278, 1310 |
| FaqI | GGGAC | 4 cut(s) | 1299, 1815, 2479, 3139 |
| FauI | CCCGC | 1 cut(s) | 1335 |
| FauNDI | CATATG | 1 cut(s) | 1093 |
| FbaI | TGATCA | 1 cut(s) | 2595 |
| FblI | GTMKAC | 3 cut(s) | 245, 1553, 3133 |
| Fnu4HI | GCNGC | 6 cut(s) | 50, 53, 621, 2722, 2999, 3450 |
| FriOI | GRGCYC | 1 cut(s) | 1932 |
| Fsp4HI | GCNGC | 6 cut(s) | 50, 53, 621, 2722, 2999, 3450 |
| FspI | TGCGCA | 1 cut(s) | 1721 |
| GlaI | GCGC | 4 cut(s) | 222, 370, 1623, 1721 |
| GluI | GCNGC | 6 cut(s) | 50, 53, 621, 2722, 2999, 3450 |
| GsaI | CCCAGC | 1 cut(s) | 3456 |
| GsuI | CTGGAG | 3 cut(s) | 134, 1155, 2276 |
| HaeII | RGCGCY | 1 cut(s) | 372 |
| HaeIII | GGCC | 2 cut(s) | 2553, 2756 |
| HapII | CCGG | 2 cut(s) | 1796, 2137 |
| HgaI | GACGC | 1 cut(s) | 2733 |
| HhaI | GCGC | 4 cut(s) | 223, 371, 1624, 1722 |
| Hin1I | GRCGYC | 1 cut(s) | 2569 |
| Hin6I | GCGC | 4 cut(s) | 221, 369, 1622, 1720 |
| HinP1I | GCGC | 4 cut(s) | 221, 369, 1622, 1720 |
| HincII | GTYRAC | 1 cut(s) | 298 |
| HindII | GTYRAC | 1 cut(s) | 298 |
| HindIII | AAGCTT | 5 cut(s) | 438, 461, 1160, 2765, 2910 |
| HpaII | CCGG | 2 cut(s) | 1796, 2137 |
| HphI | GGTGA | 8 cut(s) | 425, 906, 1078, 2176, 2227, 2296, 2791, 3335 |
| Hpy99I | CGWCG | 2 cut(s) | 2571, 2749 |
| HpyAV | CCTTC | 8 cut(s) | 488, 871, 922, 1717, 2042, 2768, 2958, 3236 |
| HpyCH4III | ACNGT | 6 cut(s) | 98, 1474, 1551, 2740, 3083, 3392 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 486, 495, 1214, 2097, 2773, 2995, 3041, 3441 |
| Hsp92I | GRCGYC | 1 cut(s) | 2569 |
| HspAI | GCGC | 4 cut(s) | 221, 369, 1622, 1720 |
| Kpn2I | TCCGGA | 1 cut(s) | 1795 |
| Ksp22I | TGATCA | 1 cut(s) | 2595 |
| LguI | GCTCTTC | 1 cut(s) | 1920 |
| LmnI | GCTCC | 8 cut(s) | 628, 852, 1255, 1640, 2295, 2773, 3317, 3398 |
| Lsp1109I | GCAGC | 4 cut(s) | 64, 607, 2708, 3436 |
| MaeIII | GTNAC | 7 cut(s) | 185, 377, 1451, 1829, 3011, 3049, 3206 |
| MfeI | CAATTG | 3 cut(s) | 671, 2188, 2259 |
| MflI | RGATCY | 5 cut(s) | 178, 1489, 2521, 2703, 2975 |
| MhlI | GDGCHC | 3 cut(s) | 1932, 2057, 3101 |
| MlyI | GAGTC | 7 cut(s) | 218, 260, 623, 1270, 2035, 2140, 3179 |
| MmeI | TCCRAC | 5 cut(s) | 620, 666, 1797, 3143, 3406 |
| Mph1103I | ATGCAT | 1 cut(s) | 1542 |
| MroI | TCCGGA | 1 cut(s) | 1795 |
| MroXI | GAANNNNTTC | 1 cut(s) | 98 |
| MslI | CAYNNNNRTG | 7 cut(s) | 533, 1377, 1715, 2247, 2881, 3007, 3009 |
| MspCI | CTTAAG | 3 cut(s) | 665, 2578, 2762 |
| MspI | CCGG | 2 cut(s) | 1796, 2137 |
| MspR9I | CCNGG | 5 cut(s) | 206, 735, 2138, 2213, 2934 |
| MunI | CAATTG | 3 cut(s) | 671, 2188, 2259 |
| Mva1269I | GAATGC | 1 cut(s) | 2199 |
| MvaI | CCWGG | 4 cut(s) | 206, 735, 2213, 2934 |
| MvnI | CGCG | 3 cut(s) | 221, 1588, 2149 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 486, 495, 1214, 2097, 2773, 2995, 3041, 3441 |
| NciI | CCSGG | 1 cut(s) | 2138 |
| NcoI | CCATGG | 1 cut(s) | 2751 |
| NdeI | CATATG | 1 cut(s) | 1093 |
| NlaIV | GGNNCC | 4 cut(s) | 1601, 1642, 2977, 3363 |
| NmuCI | GTSAC | 3 cut(s) | 1451, 3011, 3049 |
| NsbI | TGCGCA | 1 cut(s) | 1721 |
| NsiI | ATGCAT | 1 cut(s) | 1542 |
| NspI | RCATGY | 4 cut(s) | 244, 1401, 1669, 3132 |
| OliI | CACNNNNGTG | 1 cut(s) | 3007 |
| PaeR7I | CTCGAG | 1 cut(s) | 196 |
| PagI | TCATGA | 2 cut(s) | 811, 1185 |
| PaqCI | CACCTGC | 1 cut(s) | 3311 |
| PciI | ACATGT | 2 cut(s) | 1665, 3128 |
| PciSI | GCTCTTC | 1 cut(s) | 1920 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 150, 159, 1759 |
| PctI | GAATGC | 1 cut(s) | 2199 |
| PdmI | GAANNNNTTC | 1 cut(s) | 98 |
| PflFI | GACNNNGTC | 1 cut(s) | 350 |
| PfoI | TCCNGGA | 2 cut(s) | 204, 2932 |
| PkrI | GCNGC | 6 cut(s) | 51, 54, 622, 2723, 3000, 3451 |
| PleI | GAGTC | 7 cut(s) | 217, 259, 623, 1270, 2034, 2139, 3178 |
| PpsI | GAGTC | 7 cut(s) | 217, 259, 623, 1270, 2034, 2139, 3178 |
| Ppu21I | YACGTR | 2 cut(s) | 1429, 2879 |
| PpuMI | RGGWCCY | 1 cut(s) | 1099 |
| PscI | ACATGT | 2 cut(s) | 1665, 3128 |
| PshBI | ATTAAT | 1 cut(s) | 2547 |
| Psp124BI | GAGCTC | 1 cut(s) | 1932 |
| Psp5II | RGGWCCY | 1 cut(s) | 1099 |
| Psp6I | CCWGG | 4 cut(s) | 204, 733, 2211, 2932 |
| PspFI | CCCAGC | 1 cut(s) | 3452 |
| PspGI | CCWGG | 4 cut(s) | 204, 733, 2211, 2932 |
| PspN4I | GGNNCC | 4 cut(s) | 1601, 1642, 2977, 3363 |
| PspPI | GGNCC | 2 cut(s) | 1099, 2755 |
| PspPPI | RGGWCCY | 1 cut(s) | 1099 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2299 |
| PsuI | RGATCY | 5 cut(s) | 178, 1489, 2521, 2703, 2975 |
| PsyI | GACNNNGTC | 1 cut(s) | 350 |
| RsaI | GTAC | 5 cut(s) | 612, 1133, 1705, 2946, 3356 |
| RsaNI | GTAC | 5 cut(s) | 611, 1132, 1704, 2945, 3355 |
| RseI | CAYNNNNRTG | 7 cut(s) | 533, 1377, 1715, 2247, 2881, 3007, 3009 |
| SacI | GAGCTC | 1 cut(s) | 1932 |
| SapI | GCTCTTC | 1 cut(s) | 1920 |
| SatI | GCNGC | 6 cut(s) | 50, 53, 621, 2722, 2999, 3450 |
| Sau96I | GGNCC | 2 cut(s) | 1099, 2755 |
| ScaI | AGTACT | 1 cut(s) | 1133 |
| SchI | GAGTC | 7 cut(s) | 218, 260, 623, 1270, 2035, 2140, 3179 |
| ScrFI | CCNGG | 5 cut(s) | 206, 735, 2138, 2213, 2934 |
| SduI | GDGCHC | 3 cut(s) | 1932, 2057, 3101 |
| SfcI | CTRYAG | 1 cut(s) | 1744 |
| Sfr274I | CTCGAG | 1 cut(s) | 196 |
| SinI | GGWCC | 1 cut(s) | 1099 |
| SlaI | CTCGAG | 1 cut(s) | 196 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 533, 1377, 1715, 2247, 2881, 3007, 3009 |
| SpeI | ACTAGT | 2 cut(s) | 758, 3212 |
| SstI | GAGCTC | 1 cut(s) | 1932 |
| StyD4I | CCNGG | 5 cut(s) | 204, 733, 2136, 2211, 2932 |
| StyI | CCWWGG | 2 cut(s) | 2353, 2751 |
| TaaI | ACNGT | 6 cut(s) | 98, 1474, 1551, 2740, 3083, 3392 |
| TaqI | TCGA | 9 cut(s) | 153, 197, 212, 423, 1071, 1762, 2613, 3168, 3297 |
| TatI | WGTACW | 1 cut(s) | 1131 |
| TauI | GCSGC | 2 cut(s) | 52, 3001 |
| TscAI | CASTG | 3 cut(s) | 1179, 1286, 1462 |
| TseFI | GTSAC | 3 cut(s) | 1451, 3011, 3049 |
| TseI | GCWGC | 4 cut(s) | 52, 620, 2721, 3449 |
| Tsp45I | GTSAC | 3 cut(s) | 1451, 3011, 3049 |
| TspGWI | ACGGA | 6 cut(s) | 22, 263, 809, 1803, 3299, 3412 |
| TspRI | CASTG | 3 cut(s) | 1179, 1286, 1462 |
| Tth111I | GACNNNGTC | 1 cut(s) | 350 |
| Vha464I | CTTAAG | 3 cut(s) | 665, 2578, 2762 |
| VneI | GTGCAC | 2 cut(s) | 2053, 3097 |
| VpaK11BI | GGWCC | 1 cut(s) | 1099 |
| VspI | ATTAAT | 1 cut(s) | 2547 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 127 |
| XapI | RAATTY | 8 cut(s) | 1502, 1739, 1847, 2207, 2348, 2789, 3299, 3525 |
| XbaI | TCTAGA | 5 cut(s) | 562, 1196, 2510, 2698, 3238 |
| XceI | RCATGY | 4 cut(s) | 244, 1401, 1669, 3132 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 331 |
| XhoI | CTCGAG | 1 cut(s) | 196 |
| XmaJI | CCTAGG | 1 cut(s) | 2353 |
| XmiI | GTMKAC | 3 cut(s) | 245, 1553, 3133 |
| XmnI | GAANNNNTTC | 1 cut(s) | 98 |
| ZraI | GACGTC | 1 cut(s) | 2570 |
| ZrmI | AGTACT | 1 cut(s) | 1133 |
| Zsp2I | ATGCAT | 1 cut(s) | 1542 |