transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 190 | 1.9e-31 | TIR domain |
| TIR_2 | PF13676 | 13 - 111 | 9.6e-12 | TIR domain |
| NB-ARC | PF00931 | 221 - 386 | 6e-16 | NB-ARC domain |
| AAA_14 | PF13173 | 239 - 359 | 6.2e-06 | AAA domain |
| NACHT | PF05729 | 240 - 382 | 4.1e-09 | NACHT domain |
| LRR_14 | PF23598 | 749 - 809 | 3.5e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 966 - 1106 | 3e-12 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 953 |
| AatII | GACGTC | 2 cut(s) | 21, 2539 |
| Acc36I | ACCTGC | 1 cut(s) | 2923 |
| Acc65I | GGTACC | 1 cut(s) | 1746 |
| AccB1I | GGYRCC | 1 cut(s) | 1746 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1950, 2300, 2938 |
| AccI | GTMKAC | 3 cut(s) | 515, 1741, 1758 |
| AccII | CGCG | 3 cut(s) | 108, 1257, 1460 |
| AccIII | TCCGGA | 1 cut(s) | 2860 |
| AclWI | GGATC | 5 cut(s) | 122, 390, 663, 856, 2950 |
| AcoI | YGGCCR | 1 cut(s) | 1554 |
| AcuI | CTGAAG | 4 cut(s) | 350, 2000, 2624, 2651 |
| AcvI | CACGTG | 1 cut(s) | 3069 |
| AcyI | GRCGYC | 2 cut(s) | 18, 2536 |
| AdeI | CACNNNGTG | 1 cut(s) | 1861 |
| AfaI | GTAC | 8 cut(s) | 221, 455, 1748, 1960, 2692, 2890, 3262, 3554 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 404, 566, 590, 746, 1010, 1950, 2300, 2938 |
| AflII | CTTAAG | 5 cut(s) | 665, 785, 1007, 2134, 2545 |
| AflIII | ACRYGT | 4 cut(s) | 529, 1683, 2592, 3068 |
| AjiI | CACGTC | 1 cut(s) | 3538 |
| AjnI | CCWGG | 4 cut(s) | 1108, 1870, 2955, 3096 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 758, 790, 1272, 1304, 3552, 3584 |
| AleI | CACNNNNGTG | 1 cut(s) | 235 |
| Alw21I | GWGCWC | 2 cut(s) | 1140, 3068 |
| Alw44I | GTGCAC | 1 cut(s) | 3064 |
| AlwI | GGATC | 5 cut(s) | 122, 390, 663, 856, 2950 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 491 |
| Ama87I | CYCGRG | 2 cut(s) | 1232, 2002 |
| Aor13HI | TCCGGA | 1 cut(s) | 2860 |
| AoxI | GGCC | 1 cut(s) | 1554 |
| ApaLI | GTGCAC | 1 cut(s) | 3064 |
| ApeKI | GCWGC | 6 cut(s) | 632, 1363, 2070, 2208, 2412, 2508 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3034, 3066 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 773 |
| Asp718I | GGTACC | 1 cut(s) | 1746 |
| AsuC2I | CCSGG | 4 cut(s) | 399, 741, 2901, 3603 |
| AsuHPI | GGTGA | 8 cut(s) | 16, 293, 355, 1873, 2245, 2921, 3298, 3422 |
| AvaI | CYCGRG | 2 cut(s) | 1232, 2002 |
| BaeGI | GKGCMC | 1 cut(s) | 3068 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3069, 3102 |
| BalI | TGGCCA | 1 cut(s) | 1556 |
| BanI | GGYRCC | 1 cut(s) | 1746 |
| BanII | GRGCYC | 2 cut(s) | 1140, 1150 |
| BauI | CACGAG | 1 cut(s) | 1212 |
| BbrPI | CACGTG | 1 cut(s) | 3069 |
| BbsI | GAAGAC | 2 cut(s) | 1844, 2195 |
| Bbv12I | GWGCWC | 2 cut(s) | 1140, 3068 |
| BbvI | GCAGC | 6 cut(s) | 644, 1375, 2057, 2195, 2399, 2520 |
| BceAI | ACGGC | 3 cut(s) | 1144, 2284, 2460 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 896, 930, 2523, 2557 |
| BciT130I | CCWGG | 4 cut(s) | 1110, 1872, 2957, 3098 |
| BciVI | GTATCC | 1 cut(s) | 3097 |
| BclI | TGATCA | 1 cut(s) | 1642 |
| BcnI | CCSGG | 4 cut(s) | 399, 741, 2901, 3603 |
| BfaI | CTAG | 6 cut(s) | 251, 674, 1191, 2249, 2351, 2783 |
| BfmI | CTRYAG | 3 cut(s) | 860, 1578, 1759 |
| BfrI | CTTAAG | 5 cut(s) | 665, 785, 1007, 2134, 2545 |
| BfuAI | ACCTGC | 1 cut(s) | 2923 |
| BfuI | GTATCC | 1 cut(s) | 3097 |
| BisI | GCNGC | 8 cut(s) | 560, 633, 1364, 2071, 2206, 2209, 2413, 2509 |
| BlsI | GCNGC | 8 cut(s) | 561, 634, 1365, 2072, 2207, 2210, 2414, 2510 |
| BmcAI | AGTACT | 1 cut(s) | 455 |
| Bme1390I | CCNGG | 8 cut(s) | 399, 741, 1110, 1872, 2901, 2957, 3098, 3603 |
| BmeT110I | CYCGRG | 2 cut(s) | 1232, 2002 |
| BmgBI | CACGTC | 1 cut(s) | 3538 |
| BmiI | GGNNCC | 1 cut(s) | 1748 |
| BmrFI | CCNGG | 8 cut(s) | 399, 741, 1110, 1872, 2901, 2957, 3098, 3603 |
| BmrI | ACTGGG | 3 cut(s) | 1285, 1867, 2948 |
| BmsI | GCATC | 5 cut(s) | 278, 726, 1363, 1521, 2132 |
| BmuI | ACTGGG | 3 cut(s) | 1285, 1867, 2948 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2586 |
| BpiI | GAAGAC | 2 cut(s) | 1844, 2195 |
| BpmI | CTGGAG | 3 cut(s) | 409, 2277, 3423 |
| Bpu10I | CCTNAGC | 3 cut(s) | 545, 606, 1225 |
| BpuEI | CTTGAG | 6 cut(s) | 941, 1134, 2197, 2633, 2952, 3112 |
| BpuMI | CCSGG | 4 cut(s) | 399, 741, 2901, 3603 |
| Bsa29I | ATCGAT | 2 cut(s) | 1914, 2851 |
| BsaAI | YACGTR | 1 cut(s) | 3069 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1049 |
| BsaHI | GRCGYC | 2 cut(s) | 18, 2536 |
| BsaI | GGTCTC | 2 cut(s) | 1476, 3030 |
| BsaJI | CCNNGG | 8 cut(s) | 52, 474, 1108, 1109, 1458, 1557, 1871, 3356 |
| BsaWI | WCCGGW | 2 cut(s) | 2860, 3381 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 404, 566, 590, 746, 1010, 1950, 2300, 2938 |
| Bse1I | ACTGG | 8 cut(s) | 204, 496, 1028, 1280, 1302, 1862, 2943, 3406 |
| Bse3DI | GCAATG | 2 cut(s) | 706, 3423 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1049 |
| BseAI | TCCGGA | 1 cut(s) | 2860 |
| BseBI | CCWGG | 4 cut(s) | 1110, 1872, 2957, 3098 |
| BseCI | ATCGAT | 2 cut(s) | 1914, 2851 |
| BseDI | CCNNGG | 8 cut(s) | 52, 474, 1108, 1109, 1458, 1557, 1871, 3356 |
| BseGI | GGATG | 6 cut(s) | 293, 741, 1378, 2147, 2909, 3366 |
| BseJI | GATNNNNATC | 1 cut(s) | 1049 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 404, 566, 590, 746, 1010, 1950, 2300, 2938 |
| BseMI | GCAATG | 2 cut(s) | 706, 3423 |
| BseMII | CTCAG | 4 cut(s) | 475, 1068, 1782, 2008 |
| BseNI | ACTGG | 8 cut(s) | 204, 496, 1028, 1280, 1302, 1862, 2943, 3406 |
| BseRI | GAGGAG | 2 cut(s) | 69, 582 |
| BseSI | GKGCMC | 1 cut(s) | 3068 |
| BseXI | GCAGC | 6 cut(s) | 644, 1375, 2057, 2195, 2399, 2520 |
| BsgI | GTGCAG | 3 cut(s) | 1632, 2056, 3080 |
| Bsh1236I | CGCG | 3 cut(s) | 108, 1257, 1460 |
| Bsh1285I | CGRYCG | 3 cut(s) | 370, 409, 522 |
| BshFI | GGCC | 1 cut(s) | 1556 |
| BshNI | GGYRCC | 1 cut(s) | 1746 |
| BshVI | ATCGAT | 2 cut(s) | 1914, 2851 |
| BsiEI | CGRYCG | 3 cut(s) | 370, 409, 522 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1140, 3068 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1232, 2002 |
| BsiSI | CCGG | 7 cut(s) | 398, 424, 741, 2861, 2900, 3382, 3603 |
| BslFI | GGGAC | 5 cut(s) | 1076, 1091, 1306, 1888, 2497 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 404, 566, 590, 746, 1010, 1950, 2300, 2938 |
| BsmBI | CGTCTC | 2 cut(s) | 1119, 3656 |
| BsmFI | GGGAC | 5 cut(s) | 1076, 1091, 1306, 1888, 2497 |
| BsmI | GAATGC | 2 cut(s) | 1306, 2806 |
| BsnI | GGCC | 1 cut(s) | 1556 |
| Bso31I | GGTCTC | 2 cut(s) | 1476, 3030 |
| BsoBI | CYCGRG | 2 cut(s) | 1232, 2002 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1140, 1150, 3068 |
| Bsp13I | TCCGGA | 1 cut(s) | 2860 |
| BspANI | GGCC | 1 cut(s) | 1556 |
| BspCNI | CTCAG | 4 cut(s) | 474, 1069, 1783, 2007 |
| BspDI | ATCGAT | 2 cut(s) | 1914, 2851 |
| BspEI | TCCGGA | 1 cut(s) | 2860 |
| BspFNI | CGCG | 3 cut(s) | 108, 1257, 1460 |
| BspLI | GGNNCC | 1 cut(s) | 1748 |
| BspMAI | CTGCAG | 1 cut(s) | 1582 |
| BspMI | ACCTGC | 1 cut(s) | 2923 |
| BspPI | GGATC | 5 cut(s) | 122, 390, 663, 856, 2950 |
| BspT107I | GGYRCC | 1 cut(s) | 1746 |
| BspTI | CTTAAG | 5 cut(s) | 665, 785, 1007, 2134, 2545 |
| BspTNI | GGTCTC | 2 cut(s) | 1476, 3030 |
| BsrDI | GCAATG | 2 cut(s) | 706, 3423 |
| BsrI | ACTGG | 8 cut(s) | 204, 496, 1028, 1280, 1302, 1862, 2943, 3406 |
| BssECI | CCNNGG | 8 cut(s) | 52, 474, 1108, 1109, 1458, 1557, 1871, 3356 |
| BssNI | GRCGYC | 2 cut(s) | 18, 2536 |
| BssSI | CACGAG | 1 cut(s) | 1212 |
| BssT1I | CCWWGG | 3 cut(s) | 474, 1557, 3356 |
| Bst2BI | CACGAG | 1 cut(s) | 1212 |
| Bst2UI | CCWGG | 4 cut(s) | 1110, 1872, 2957, 3098 |
| Bst4CI | ACNGT | 8 cut(s) | 343, 1746, 1763, 2707, 2774, 3151, 3206, 3213 |
| Bst6I | CTCTTC | 7 cut(s) | 495, 779, 860, 1648, 2364, 2394, 2649 |
| BstACI | GRCGYC | 2 cut(s) | 18, 2536 |
| BstAFI | CTTAAG | 5 cut(s) | 665, 785, 1007, 2134, 2545 |
| BstBAI | YACGTR | 1 cut(s) | 3069 |
| BstC8I | GCNNGC | 2 cut(s) | 2713, 2717 |
| BstDSI | CCRYGG | 1 cut(s) | 1458 |
| BstEII | GGTNACC | 1 cut(s) | 1923 |
| BstF5I | GGATG | 6 cut(s) | 293, 741, 1378, 2147, 2909, 3366 |
| BstFNI | CGCG | 3 cut(s) | 108, 1257, 1460 |
| BstMCI | CGRYCG | 3 cut(s) | 370, 409, 522 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2214, 3102 |
| BstNI | CCWGG | 4 cut(s) | 1110, 1872, 2957, 3098 |
| BstNSI | RCATGY | 3 cut(s) | 533, 1687, 2596 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2586 |
| BstPI | GGTNACC | 1 cut(s) | 1923 |
| BstSCI | CCNGG | 8 cut(s) | 397, 739, 1108, 1870, 2899, 2955, 3096, 3601 |
| BstSFI | CTRYAG | 3 cut(s) | 860, 1578, 1759 |
| BstSLI | GKGCMC | 1 cut(s) | 3068 |
| BstUI | CGCG | 3 cut(s) | 108, 1257, 1460 |
| BstV1I | GCAGC | 6 cut(s) | 644, 1375, 2057, 2195, 2399, 2520 |
| BstV2I | GAAGAC | 2 cut(s) | 1844, 2195 |
| BstX2I | RGATCY | 1 cut(s) | 382 |
| BstYI | RGATCY | 1 cut(s) | 382 |
| Bsu15I | ATCGAT | 2 cut(s) | 1914, 2851 |
| BsuI | GTATCC | 1 cut(s) | 3097 |
| BsuRI | GGCC | 1 cut(s) | 1556 |
| BsuTUI | ATCGAT | 2 cut(s) | 1914, 2851 |
| BtgI | CCRYGG | 1 cut(s) | 1458 |
| BtgZI | GCGATG | 2 cut(s) | 123, 3150 |
| BtrI | CACGTC | 1 cut(s) | 3538 |
| BtsCI | GGATG | 6 cut(s) | 293, 741, 1378, 2147, 2909, 3366 |
| BtsI | GCAGTG | 1 cut(s) | 3068 |
| BtsIMutI | CAGTG | 8 cut(s) | 197, 1089, 1273, 1295, 1855, 2675, 2936, 3068 |
| BveI | ACCTGC | 1 cut(s) | 2923 |
| Cac8I | GCNNGC | 2 cut(s) | 2713, 2717 |
| CaiI | CAGNNNCTG | 1 cut(s) | 491 |
| Cfr42I | CCGCGG | 1 cut(s) | 1461 |
| ClaI | ATCGAT | 2 cut(s) | 1914, 2851 |
| Csp6I | GTAC | 8 cut(s) | 220, 454, 1747, 1959, 2691, 2889, 3261, 3553 |
| CviQI | GTAC | 8 cut(s) | 220, 454, 1747, 1959, 2691, 2889, 3261, 3553 |
| DraI | TTTAAA | 3 cut(s) | 2082, 2328, 3397 |
| DraIII | CACNNNGTG | 1 cut(s) | 1861 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 953 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 953 |
| EaeI | YGGCCR | 1 cut(s) | 1554 |
| Eam1104I | CTCTTC | 7 cut(s) | 495, 779, 860, 1648, 2364, 2394, 2649 |
| EarI | CTCTTC | 7 cut(s) | 495, 779, 860, 1648, 2364, 2394, 2649 |
| Ecl136II | GAGCTC | 1 cut(s) | 1138 |
| Eco130I | CCWWGG | 3 cut(s) | 474, 1557, 3356 |
| Eco24I | GRGCYC | 2 cut(s) | 1140, 1150 |
| Eco31I | GGTCTC | 2 cut(s) | 1476, 3030 |
| Eco32I | GATATC | 1 cut(s) | 996 |
| Eco53kI | GAGCTC | 1 cut(s) | 1138 |
| Eco57I | CTGAAG | 4 cut(s) | 350, 2000, 2624, 2651 |
| Eco72I | CACGTG | 1 cut(s) | 3069 |
| Eco88I | CYCGRG | 2 cut(s) | 1232, 2002 |
| Eco91I | GGTNACC | 1 cut(s) | 1923 |
| EcoICRI | GAGCTC | 1 cut(s) | 1138 |
| EcoO65I | GGTNACC | 1 cut(s) | 1923 |
| EcoRI | GAATTC | 6 cut(s) | 184, 506, 1238, 2014, 2179, 2977 |
| EcoRII | CCWGG | 4 cut(s) | 1108, 1870, 2955, 3096 |
| EcoRV | GATATC | 1 cut(s) | 996 |
| EcoT14I | CCWWGG | 3 cut(s) | 474, 1557, 3356 |
| EcoT22I | ATGCAT | 1 cut(s) | 1536 |
| EcoT38I | GRGCYC | 2 cut(s) | 1140, 1150 |
| ErhI | CCWWGG | 3 cut(s) | 474, 1557, 3356 |
| Esp3I | CGTCTC | 2 cut(s) | 1119, 3656 |
| FaqI | GGGAC | 5 cut(s) | 1076, 1091, 1306, 1888, 2497 |
| FauI | CCCGC | 2 cut(s) | 1250, 2724 |
| FbaI | TGATCA | 1 cut(s) | 1642 |
| FblI | GTMKAC | 3 cut(s) | 515, 1741, 1758 |
| Fnu4HI | GCNGC | 8 cut(s) | 560, 633, 1364, 2071, 2206, 2209, 2413, 2509 |
| FokI | GGATG | 6 cut(s) | 300, 748, 1385, 2154, 2916, 3373 |
| FriOI | GRGCYC | 2 cut(s) | 1140, 1150 |
| Fsp4HI | GCNGC | 8 cut(s) | 560, 633, 1364, 2071, 2206, 2209, 2413, 2509 |
| FspBI | CTAG | 6 cut(s) | 251, 674, 1191, 2249, 2351, 2783 |
| GluI | GCNGC | 8 cut(s) | 560, 633, 1364, 2071, 2206, 2209, 2413, 2509 |
| GsuI | CTGGAG | 3 cut(s) | 409, 2277, 3423 |
| HaeIII | GGCC | 1 cut(s) | 1556 |
| HapII | CCGG | 7 cut(s) | 398, 424, 741, 2861, 2900, 3382, 3603 |
| Hin1I | GRCGYC | 2 cut(s) | 18, 2536 |
| HincII | GTYRAC | 1 cut(s) | 3209 |
| HindII | GTYRAC | 1 cut(s) | 3209 |
| HindIII | AAGCTT | 4 cut(s) | 782, 2215, 2970, 3103 |
| HpaII | CCGG | 7 cut(s) | 398, 424, 741, 2861, 2900, 3382, 3603 |
| HphI | GGTGA | 8 cut(s) | 16, 293, 355, 1873, 2245, 2921, 3298, 3422 |
| Hpy166II | GTNNAC | 9 cut(s) | 222, 516, 1433, 1742, 1759, 2872, 3066, 3078, 3209 |
| Hpy8I | GTNNAC | 9 cut(s) | 222, 516, 1433, 1742, 1759, 2872, 3066, 3078, 3209 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 2538 |
| HpyCH4III | ACNGT | 8 cut(s) | 343, 1746, 1763, 2707, 2774, 3151, 3206, 3213 |
| HpyCH4IV | ACGT | 6 cut(s) | 18, 1422, 2536, 2817, 3068, 3537 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2214, 3102 |
| HpySE526I | ACGT | 6 cut(s) | 18, 1422, 2536, 2817, 3068, 3537 |
| Hsp92I | GRCGYC | 2 cut(s) | 18, 2536 |
| Kpn2I | TCCGGA | 1 cut(s) | 2860 |
| KpnI | GGTACC | 1 cut(s) | 1750 |
| Ksp22I | TGATCA | 1 cut(s) | 1642 |
| KspI | CCGCGG | 1 cut(s) | 1461 |
| LmnI | GCTCC | 8 cut(s) | 247, 593, 841, 1038, 1183, 1249, 1953, 2377 |
| Lsp1109I | GCAGC | 6 cut(s) | 644, 1375, 2057, 2195, 2399, 2520 |
| LweI | GCATC | 5 cut(s) | 278, 726, 1363, 1521, 2132 |
| MaeI | CTAG | 6 cut(s) | 251, 674, 1191, 2249, 2351, 2783 |
| MaeII | ACGT | 6 cut(s) | 18, 1422, 2536, 2817, 3068, 3537 |
| MflI | RGATCY | 1 cut(s) | 382 |
| MhlI | GDGCHC | 3 cut(s) | 1140, 1150, 3068 |
| MlsI | TGGCCA | 1 cut(s) | 1556 |
| MluNI | TGGCCA | 1 cut(s) | 1556 |
| MlyI | GAGTC | 6 cut(s) | 125, 236, 2185, 2261, 2350, 3164 |
| MmeI | TCCRAC | 4 cut(s) | 39, 1340, 3458, 3658 |
| Mox20I | TGGCCA | 1 cut(s) | 1556 |
| Mph1103I | ATGCAT | 1 cut(s) | 1536 |
| MroI | TCCGGA | 1 cut(s) | 2860 |
| MroXI | GAANNNNTTC | 1 cut(s) | 773 |
| MscI | TGGCCA | 1 cut(s) | 1556 |
| MslI | CAYNNNNRTG | 1 cut(s) | 235 |
| Msp20I | TGGCCA | 1 cut(s) | 1556 |
| MspA1I | CMGCKG | 4 cut(s) | 839, 1460, 2846, 3443 |
| MspCI | CTTAAG | 5 cut(s) | 665, 785, 1007, 2134, 2545 |
| MspI | CCGG | 7 cut(s) | 398, 424, 741, 2861, 2900, 3382, 3603 |
| MspR9I | CCNGG | 8 cut(s) | 399, 741, 1110, 1872, 2901, 2957, 3098, 3603 |
| Mva1269I | GAATGC | 2 cut(s) | 1306, 2806 |
| MvaI | CCWGG | 4 cut(s) | 1110, 1872, 2957, 3098 |
| MvnI | CGCG | 3 cut(s) | 108, 1257, 1460 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2214, 3102 |
| NciI | CCSGG | 4 cut(s) | 399, 741, 2901, 3603 |
| NlaIV | GGNNCC | 1 cut(s) | 1748 |
| NmuCI | GTSAC | 8 cut(s) | 4, 228, 980, 1087, 1404, 2588, 2774, 3250 |
| NsiI | ATGCAT | 1 cut(s) | 1536 |
| NspI | RCATGY | 3 cut(s) | 533, 1687, 2596 |
| OliI | CACNNNNGTG | 1 cut(s) | 235 |
| PaeR7I | CTCGAG | 2 cut(s) | 1232, 2002 |
| PasI | CCCWGGG | 1 cut(s) | 1109 |
| PciI | ACATGT | 3 cut(s) | 529, 1683, 2592 |
| PctI | GAATGC | 2 cut(s) | 1306, 2806 |
| PdmI | GAANNNNTTC | 1 cut(s) | 773 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1950, 2300, 2938 |
| PfoI | TCCNGGA | 3 cut(s) | 2899, 2955, 3601 |
| PkrI | GCNGC | 8 cut(s) | 561, 634, 1365, 2072, 2207, 2210, 2414, 2510 |
| Ple19I | CGATCG | 1 cut(s) | 522 |
| PleI | GAGTC | 6 cut(s) | 125, 235, 2185, 2260, 2350, 3163 |
| PmaCI | CACGTG | 1 cut(s) | 3069 |
| PmlI | CACGTG | 1 cut(s) | 3069 |
| PpsI | GAGTC | 6 cut(s) | 125, 235, 2185, 2260, 2350, 3163 |
| Ppu21I | YACGTR | 1 cut(s) | 3069 |
| PscI | ACATGT | 3 cut(s) | 529, 1683, 2592 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2586 |
| Psp124BI | GAGCTC | 1 cut(s) | 1140 |
| Psp6I | CCWGG | 4 cut(s) | 1108, 1870, 2955, 3096 |
| PspCI | CACGTG | 1 cut(s) | 3069 |
| PspEI | GGTNACC | 1 cut(s) | 1923 |
| PspGI | CCWGG | 4 cut(s) | 1108, 1870, 2955, 3096 |
| PspN4I | GGNNCC | 1 cut(s) | 1748 |
| PspXI | VCTCGAGB | 1 cut(s) | 2002 |
| PstI | CTGCAG | 1 cut(s) | 1582 |
| PstNI | CAGNNNCTG | 1 cut(s) | 491 |
| PsuI | RGATCY | 1 cut(s) | 382 |
| PvuI | CGATCG | 1 cut(s) | 522 |
| PvuII | CAGCTG | 1 cut(s) | 2846 |
| RsaI | GTAC | 8 cut(s) | 221, 455, 1748, 1960, 2692, 2890, 3262, 3554 |
| RsaNI | GTAC | 8 cut(s) | 220, 454, 1747, 1959, 2691, 2889, 3261, 3553 |
| RseI | CAYNNNNRTG | 1 cut(s) | 235 |
| SacI | GAGCTC | 1 cut(s) | 1140 |
| SacII | CCGCGG | 1 cut(s) | 1461 |
| SatI | GCNGC | 8 cut(s) | 560, 633, 1364, 2071, 2206, 2209, 2413, 2509 |
| ScaI | AGTACT | 1 cut(s) | 455 |
| SchI | GAGTC | 6 cut(s) | 125, 236, 2185, 2261, 2350, 3164 |
| ScrFI | CCNGG | 8 cut(s) | 399, 741, 1110, 1872, 2901, 2957, 3098, 3603 |
| SduI | GDGCHC | 3 cut(s) | 1140, 1150, 3068 |
| SfaNI | GCATC | 5 cut(s) | 278, 726, 1363, 1521, 2132 |
| SfcI | CTRYAG | 3 cut(s) | 860, 1578, 1759 |
| Sfr274I | CTCGAG | 2 cut(s) | 1232, 2002 |
| Sfr303I | CCGCGG | 1 cut(s) | 1461 |
| SgrBI | CCGCGG | 1 cut(s) | 1461 |
| SlaI | CTCGAG | 2 cut(s) | 1232, 2002 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 235 |
| SspI | AATATT | 3 cut(s) | 1165, 1840, 1939 |
| SspMI | CTAG | 6 cut(s) | 251, 674, 1191, 2249, 2351, 2783 |
| SstI | GAGCTC | 1 cut(s) | 1140 |
| StyD4I | CCNGG | 8 cut(s) | 397, 739, 1108, 1870, 2899, 2955, 3096, 3601 |
| StyI | CCWWGG | 3 cut(s) | 474, 1557, 3356 |
| TaaI | ACNGT | 8 cut(s) | 343, 1746, 1763, 2707, 2774, 3151, 3206, 3213 |
| TaiI | ACGT | 6 cut(s) | 21, 1425, 2539, 2820, 3071, 3540 |
| TaqII | GACCGA | 1 cut(s) | 356 |
| TatI | WGTACW | 4 cut(s) | 453, 1958, 2690, 3552 |
| TauI | GCSGC | 2 cut(s) | 562, 2208 |
| TscAI | CASTG | 8 cut(s) | 204, 1096, 1280, 1302, 1862, 2675, 2943, 3068 |
| TseFI | GTSAC | 8 cut(s) | 4, 228, 980, 1087, 1404, 2588, 2774, 3250 |
| TseI | GCWGC | 6 cut(s) | 632, 1363, 2070, 2208, 2412, 2508 |
| Tsp45I | GTSAC | 8 cut(s) | 4, 228, 980, 1087, 1404, 2588, 2774, 3250 |
| TspGWI | ACGGA | 1 cut(s) | 239 |
| TspRI | CASTG | 8 cut(s) | 204, 1096, 1280, 1302, 1862, 2675, 2943, 3068 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1950, 2300, 2938 |
| Vha464I | CTTAAG | 5 cut(s) | 665, 785, 1007, 2134, 2545 |
| VneI | GTGCAC | 1 cut(s) | 3064 |
| XbaI | TCTAGA | 2 cut(s) | 1190, 2248 |
| XceI | RCATGY | 3 cut(s) | 533, 1687, 2596 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3170 |
| XhoI | CTCGAG | 2 cut(s) | 1232, 2002 |
| XmiI | GTMKAC | 3 cut(s) | 515, 1741, 1758 |
| XmnI | GAANNNNTTC | 1 cut(s) | 773 |
| XspI | CTAG | 6 cut(s) | 251, 674, 1191, 2249, 2351, 2783 |
| ZraI | GACGTC | 2 cut(s) | 19, 2537 |
| ZrmI | AGTACT | 1 cut(s) | 455 |
| Zsp2I | ATGCAT | 1 cut(s) | 1536 |