RESISTANCE protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 9 - 162 | 3.2e-14 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 232 - 298 | 7.9e-06 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 415 - 434 | 1.3e-06 | Leucine Rich Repeat |
| LRR_13 | PF23286 | 506 - 679 | 5.5e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 748 - 885 | 4.7e-12 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1515 |
| Acc16I | TGCGCA | 1 cut(s) | 71 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2230 |
| AccI | GTMKAC | 3 cut(s) | 591, 1252, 1583 |
| AccII | CGCG | 1 cut(s) | 2954 |
| AccIII | TCCGGA | 1 cut(s) | 1825 |
| AciI | CCGC | 4 cut(s) | 95, 421, 687, 2426 |
| AclI | AACGTT | 2 cut(s) | 884, 2855 |
| AclWI | GGATC | 6 cut(s) | 569, 1441, 2442, 2623, 3085, 3167 |
| AcoI | YGGCCR | 1 cut(s) | 2427 |
| AcsI | RAATTY | 7 cut(s) | 448, 457, 1564, 1931, 1950, 2319, 2354 |
| AcuI | CTGAAG | 1 cut(s) | 1731 |
| AcvI | CACGTG | 1 cut(s) | 1558 |
| AcyI | GRCGYC | 1 cut(s) | 1512 |
| AdeI | CACNNNGTG | 1 cut(s) | 1561 |
| AfaI | GTAC | 8 cut(s) | 513, 668, 1551, 1974, 2473, 2532, 2789, 3437 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 94, 693, 767, 860, 2230, 2429, 3182 |
| AflII | CTTAAG | 3 cut(s) | 359, 785, 2662 |
| AflIII | ACRYGT | 3 cut(s) | 1555, 1812, 2285 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2450 |
| AhlI | ACTAGT | 1 cut(s) | 2276 |
| AjnI | CCWGG | 4 cut(s) | 853, 1293, 3034, 3271 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 663, 695, 971, 1003, 1113, 1145 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3407, 3439 |
| Alw21I | GWGCWC | 2 cut(s) | 255, 2312 |
| Alw26I | GTCTC | 6 cut(s) | 713, 1239, 2260, 2285, 2437, 3237 |
| AlwI | GGATC | 6 cut(s) | 569, 1441, 2442, 2623, 3085, 3167 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2337 |
| Ama87I | CYCGRG | 3 cut(s) | 148, 214, 2552 |
| Aor13HI | TCCGGA | 1 cut(s) | 1825 |
| AoxI | GGCC | 2 cut(s) | 2115, 2427 |
| ApeKI | GCWGC | 2 cut(s) | 5, 973 |
| ApoI | RAATTY | 7 cut(s) | 448, 457, 1564, 1931, 1950, 2319, 2354 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2627, 2659 |
| AspLEI | GCGC | 1 cut(s) | 72 |
| AspS9I | GGNCC | 1 cut(s) | 2115 |
| AsuC2I | CCSGG | 3 cut(s) | 26, 2030, 2431 |
| AsuHPI | GGTGA | 7 cut(s) | 343, 713, 1573, 2374, 3056, 3326, 3347 |
| AvaI | CYCGRG | 3 cut(s) | 148, 214, 2552 |
| BaeI | ACNNNNGTAYC | 8 cut(s) | 634, 667, 1206, 1239, 1707, 1740, 2096, 2129 |
| BanII | GRGCYC | 2 cut(s) | 255, 2312 |
| BauI | CACGAG | 2 cut(s) | 254, 528 |
| BbrPI | CACGTG | 1 cut(s) | 1558 |
| BbsI | GAAGAC | 4 cut(s) | 298, 2245, 2282, 2480 |
| Bbv12I | GWGCWC | 2 cut(s) | 255, 2312 |
| BbvCI | CCTCAGC | 1 cut(s) | 109 |
| BbvI | GCAGC | 2 cut(s) | 17, 960 |
| BceAI | ACGGC | 3 cut(s) | 2609, 2626, 3432 |
| BciT130I | CCWGG | 4 cut(s) | 855, 1295, 3036, 3273 |
| BciVI | GTATCC | 2 cut(s) | 1000, 2089 |
| BcnI | CCSGG | 3 cut(s) | 26, 2030, 2431 |
| BcoDI | GTCTC | 6 cut(s) | 713, 1239, 2260, 2285, 2437, 3237 |
| BcuI | ACTAGT | 1 cut(s) | 2276 |
| BfaI | CTAG | 3 cut(s) | 1352, 2277, 2816 |
| BfmI | CTRYAG | 1 cut(s) | 974 |
| BfrI | CTTAAG | 3 cut(s) | 359, 785, 2662 |
| BfuI | GTATCC | 2 cut(s) | 1000, 2089 |
| BglII | AGATCT | 3 cut(s) | 157, 1609, 2870 |
| BisI | GCNGC | 3 cut(s) | 6, 974, 2427 |
| BlsI | GCNGC | 3 cut(s) | 7, 975, 2428 |
| BmcAI | AGTACT | 1 cut(s) | 513 |
| Bme1390I | CCNGG | 7 cut(s) | 26, 855, 1295, 2030, 2431, 3036, 3273 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2450 |
| BmeT110I | CYCGRG | 3 cut(s) | 148, 214, 2552 |
| BmgT120I | GGNCC | 1 cut(s) | 2115 |
| BmiI | GGNNCC | 2 cut(s) | 3102, 3425 |
| BmrFI | CCNGG | 7 cut(s) | 26, 855, 1295, 2030, 2431, 3036, 3273 |
| BmsI | GCATC | 7 cut(s) | 17, 840, 925, 1279, 1647, 2917, 3382 |
| BpiI | GAAGAC | 4 cut(s) | 298, 2245, 2282, 2480 |
| BpmI | CTGGAG | 4 cut(s) | 595, 2406, 2501, 3030 |
| Bpu10I | CCTNAGC | 1 cut(s) | 109 |
| BpuEI | CTTGAG | 4 cut(s) | 1181, 1480, 2369, 2804 |
| BpuMI | CCSGG | 3 cut(s) | 26, 2030, 2431 |
| BsaAI | YACGTR | 1 cut(s) | 1558 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1011 |
| BsaHI | GRCGYC | 1 cut(s) | 1512 |
| BsaI | GGTCTC | 1 cut(s) | 3237 |
| BsaWI | WCCGGW | 1 cut(s) | 1825 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1965, 1995 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 94, 693, 767, 860, 2230, 2429, 3182 |
| Bse1I | ACTGG | 7 cut(s) | 612, 742, 939, 1991, 2484, 2532, 2841 |
| Bse3DI | GCAATG | 2 cut(s) | 2685, 3206 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1011 |
| BseAI | TCCGGA | 1 cut(s) | 1825 |
| BseBI | CCWGG | 4 cut(s) | 855, 1295, 3036, 3273 |
| BseGI | GGATG | 8 cut(s) | 751, 855, 1063, 1291, 1603, 1995, 2546, 3263 |
| BseJI | GATNNNNATC | 1 cut(s) | 1011 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 94, 693, 767, 860, 2230, 2429, 3182 |
| BseMI | GCAATG | 2 cut(s) | 2685, 3206 |
| BseNI | ACTGG | 7 cut(s) | 612, 742, 939, 1991, 2484, 2532, 2841 |
| BseRI | GAGGAG | 3 cut(s) | 72, 341, 931 |
| BseX3I | CGGCCG | 1 cut(s) | 2427 |
| BseXI | GCAGC | 2 cut(s) | 17, 960 |
| BsgI | GTGCAG | 1 cut(s) | 3165 |
| Bsh1236I | CGCG | 1 cut(s) | 2954 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2430 |
| BshFI | GGCC | 2 cut(s) | 2117, 2429 |
| BsiEI | CGRYCG | 1 cut(s) | 2430 |
| BsiHKAI | GWGCWC | 2 cut(s) | 255, 2312 |
| BsiHKCI | CYCGRG | 3 cut(s) | 148, 214, 2552 |
| BsiSI | CCGG | 4 cut(s) | 26, 1826, 2030, 2430 |
| BslFI | GGGAC | 5 cut(s) | 131, 413, 1211, 2427, 3032 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 94, 693, 767, 860, 2230, 2429, 3182 |
| BsmAI | GTCTC | 6 cut(s) | 713, 1239, 2260, 2285, 2437, 3237 |
| BsmBI | CGTCTC | 2 cut(s) | 713, 2260 |
| BsmFI | GGGAC | 5 cut(s) | 131, 413, 1211, 2427, 3032 |
| BsmI | GAATGC | 1 cut(s) | 2990 |
| BsnI | GGCC | 2 cut(s) | 2117, 2429 |
| Bso31I | GGTCTC | 1 cut(s) | 3237 |
| BsoBI | CYCGRG | 3 cut(s) | 148, 214, 2552 |
| Bsp1286I | GDGCHC | 2 cut(s) | 255, 2312 |
| Bsp13I | TCCGGA | 1 cut(s) | 1825 |
| Bsp1407I | TGTACA | 2 cut(s) | 2471, 3435 |
| Bsp19I | CCATGG | 1 cut(s) | 2000 |
| BspACI | CCGC | 4 cut(s) | 95, 421, 687, 2426 |
| BspANI | GGCC | 2 cut(s) | 2117, 2429 |
| BspEI | TCCGGA | 1 cut(s) | 1825 |
| BspFNI | CGCG | 1 cut(s) | 2954 |
| BspHI | TCATGA | 1 cut(s) | 2733 |
| BspLI | GGNNCC | 2 cut(s) | 3102, 3425 |
| BspMAI | CTGCAG | 1 cut(s) | 978 |
| BspPI | GGATC | 6 cut(s) | 569, 1441, 2442, 2623, 3085, 3167 |
| BspQI | GCTCTTC | 2 cut(s) | 987, 2523 |
| BspTI | CTTAAG | 3 cut(s) | 359, 785, 2662 |
| BspTNI | GGTCTC | 1 cut(s) | 3237 |
| BsrDI | GCAATG | 2 cut(s) | 2685, 3206 |
| BsrGI | TGTACA | 2 cut(s) | 2471, 3435 |
| BsrI | ACTGG | 7 cut(s) | 612, 742, 939, 1991, 2484, 2532, 2841 |
| BssNI | GRCGYC | 1 cut(s) | 1512 |
| BssSI | CACGAG | 2 cut(s) | 254, 528 |
| BssT1I | CCWWGG | 3 cut(s) | 1683, 2000, 3092 |
| Bst2BI | CACGAG | 2 cut(s) | 254, 528 |
| Bst2UI | CCWGG | 4 cut(s) | 855, 1295, 3036, 3273 |
| Bst6I | CTCTTC | 4 cut(s) | 974, 987, 2523, 3240 |
| BstACI | GRCGYC | 1 cut(s) | 1512 |
| BstAFI | CTTAAG | 3 cut(s) | 359, 785, 2662 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1866 |
| BstAUI | TGTACA | 2 cut(s) | 2471, 3435 |
| BstBAI | YACGTR | 1 cut(s) | 1558 |
| BstC8I | GCNNGC | 2 cut(s) | 535, 691 |
| BstDSI | CCRYGG | 2 cut(s) | 2000, 3448 |
| BstF5I | GGATG | 8 cut(s) | 751, 855, 1063, 1291, 1603, 1995, 2546, 3263 |
| BstFNI | CGCG | 1 cut(s) | 2954 |
| BstHHI | GCGC | 1 cut(s) | 72 |
| BstMAI | GTCTC | 6 cut(s) | 713, 1239, 2260, 2285, 2437, 3237 |
| BstMCI | CGRYCG | 1 cut(s) | 2430 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 441, 1361, 1700, 1866, 2218, 2602, 3143 |
| BstNI | CCWGG | 4 cut(s) | 855, 1295, 3036, 3273 |
| BstNSI | RCATGY | 3 cut(s) | 1521, 1816, 2289 |
| BstSCI | CCNGG | 7 cut(s) | 24, 853, 1293, 2028, 2429, 3034, 3271 |
| BstSFI | CTRYAG | 1 cut(s) | 974 |
| BstUI | CGCG | 1 cut(s) | 2954 |
| BstV1I | GCAGC | 2 cut(s) | 17, 960 |
| BstV2I | GAAGAC | 4 cut(s) | 298, 2245, 2282, 2480 |
| BstX2I | RGATCY | 7 cut(s) | 157, 561, 1609, 2434, 2628, 2870, 3172 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 946, 3074, 3449 |
| BstYI | RGATCY | 7 cut(s) | 157, 561, 1609, 2434, 2628, 2870, 3172 |
| BstZI | CGGCCG | 1 cut(s) | 2427 |
| BsuI | GTATCC | 2 cut(s) | 1000, 2089 |
| BsuRI | GGCC | 2 cut(s) | 2117, 2429 |
| BtgI | CCRYGG | 2 cut(s) | 2000, 3448 |
| BtsCI | GGATG | 8 cut(s) | 751, 855, 1063, 1291, 1603, 1995, 2546, 3263 |
| BtsIMutI | CAGTG | 6 cut(s) | 162, 200, 619, 1984, 2338, 2834 |
| Cac8I | GCNNGC | 2 cut(s) | 535, 691 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2337 |
| CciI | TCATGA | 1 cut(s) | 2733 |
| CfoI | GCGC | 1 cut(s) | 72 |
| Cfr13I | GGNCC | 1 cut(s) | 2115 |
| Csp6I | GTAC | 8 cut(s) | 512, 667, 1550, 1973, 2472, 2531, 2788, 3436 |
| CviQI | GTAC | 8 cut(s) | 512, 667, 1550, 1973, 2472, 2531, 2788, 3436 |
| DraIII | CACNNNGTG | 1 cut(s) | 1561 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2450 |
| EaeI | YGGCCR | 1 cut(s) | 2427 |
| EagI | CGGCCG | 1 cut(s) | 2427 |
| Eam1104I | CTCTTC | 4 cut(s) | 974, 987, 2523, 3240 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2450 |
| EarI | CTCTTC | 4 cut(s) | 974, 987, 2523, 3240 |
| Ecl136II | GAGCTC | 2 cut(s) | 253, 2310 |
| EclXI | CGGCCG | 1 cut(s) | 2427 |
| Eco130I | CCWWGG | 3 cut(s) | 1683, 2000, 3092 |
| Eco24I | GRGCYC | 2 cut(s) | 255, 2312 |
| Eco31I | GGTCTC | 1 cut(s) | 3237 |
| Eco32I | GATATC | 4 cut(s) | 1753, 1880, 2759, 3253 |
| Eco52I | CGGCCG | 1 cut(s) | 2427 |
| Eco53kI | GAGCTC | 2 cut(s) | 253, 2310 |
| Eco57I | CTGAAG | 1 cut(s) | 1731 |
| Eco72I | CACGTG | 1 cut(s) | 1558 |
| Eco88I | CYCGRG | 3 cut(s) | 148, 214, 2552 |
| EcoICRI | GAGCTC | 2 cut(s) | 253, 2310 |
| EcoRI | GAATTC | 1 cut(s) | 1564 |
| EcoRII | CCWGG | 4 cut(s) | 853, 1293, 3034, 3271 |
| EcoRV | GATATC | 4 cut(s) | 1753, 1880, 2759, 3253 |
| EcoT14I | CCWWGG | 3 cut(s) | 1683, 2000, 3092 |
| EcoT22I | ATGCAT | 2 cut(s) | 1276, 1662 |
| EcoT38I | GRGCYC | 2 cut(s) | 255, 2312 |
| ErhI | CCWWGG | 3 cut(s) | 1683, 2000, 3092 |
| Esp3I | CGTCTC | 2 cut(s) | 713, 2260 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 428, 460, 1068, 1100 |
| FaqI | GGGAC | 5 cut(s) | 131, 413, 1211, 2427, 3032 |
| FauI | CCCGC | 2 cut(s) | 88, 694 |
| FblI | GTMKAC | 3 cut(s) | 591, 1252, 1583 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 974, 2427 |
| FokI | GGATG | 8 cut(s) | 738, 862, 1070, 1298, 1610, 2002, 2553, 3270 |
| FriOI | GRGCYC | 2 cut(s) | 255, 2312 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 974, 2427 |
| FspBI | CTAG | 3 cut(s) | 1352, 2277, 2816 |
| FspI | TGCGCA | 1 cut(s) | 71 |
| GlaI | GCGC | 1 cut(s) | 71 |
| GluI | GCNGC | 3 cut(s) | 6, 974, 2427 |
| GsuI | CTGGAG | 4 cut(s) | 595, 2406, 2501, 3030 |
| HaeIII | GGCC | 2 cut(s) | 2117, 2429 |
| HapII | CCGG | 4 cut(s) | 26, 1826, 2030, 2430 |
| HhaI | GCGC | 1 cut(s) | 72 |
| Hin1I | GRCGYC | 1 cut(s) | 1512 |
| Hin6I | GCGC | 1 cut(s) | 70 |
| HinP1I | GCGC | 1 cut(s) | 70 |
| HincII | GTYRAC | 3 cut(s) | 2142, 2853, 3475 |
| HindII | GTYRAC | 3 cut(s) | 2142, 2853, 3475 |
| HindIII | AAGCTT | 1 cut(s) | 362 |
| HpaI | GTTAAC | 1 cut(s) | 2853 |
| HpaII | CCGG | 4 cut(s) | 26, 1826, 2030, 2430 |
| HphI | GGTGA | 7 cut(s) | 343, 713, 1573, 2374, 3056, 3326, 3347 |
| Hpy99I | CGWCG | 2 cut(s) | 644, 1517 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 441, 1361, 1700, 1866, 2218, 2602, 3143 |
| Hsp92I | GRCGYC | 1 cut(s) | 1512 |
| HspAI | GCGC | 1 cut(s) | 70 |
| Kpn2I | TCCGGA | 1 cut(s) | 1825 |
| KspAI | GTTAAC | 1 cut(s) | 2853 |
| LguI | GCTCTTC | 2 cut(s) | 987, 2523 |
| LmnI | GCTCC | 5 cut(s) | 59, 98, 1361, 2069, 3011 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 960 |
| LweI | GCATC | 7 cut(s) | 17, 840, 925, 1279, 1647, 2917, 3382 |
| MaeI | CTAG | 3 cut(s) | 1352, 2277, 2816 |
| MaeIII | GTNAC | 4 cut(s) | 1847, 1956, 2333, 3310 |
| MflI | RGATCY | 7 cut(s) | 157, 561, 1609, 2434, 2628, 2870, 3172 |
| MhlI | GDGCHC | 2 cut(s) | 255, 2312 |
| MlyI | GAGTC | 8 cut(s) | 38, 239, 491, 566, 1196, 1589, 2494, 2930 |
| MmeI | TCCRAC | 3 cut(s) | 817, 2588, 3055 |
| Mph1103I | ATGCAT | 2 cut(s) | 1276, 1662 |
| MroI | TCCGGA | 1 cut(s) | 1825 |
| MspA1I | CMGCKG | 2 cut(s) | 113, 2426 |
| MspCI | CTTAAG | 3 cut(s) | 359, 785, 2662 |
| MspI | CCGG | 4 cut(s) | 26, 1826, 2030, 2430 |
| MspR9I | CCNGG | 7 cut(s) | 26, 855, 1295, 2030, 2431, 3036, 3273 |
| Mva1269I | GAATGC | 1 cut(s) | 2990 |
| MvaI | CCWGG | 4 cut(s) | 855, 1295, 3036, 3273 |
| MvnI | CGCG | 1 cut(s) | 2954 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 441, 1361, 1700, 1866, 2218, 2602, 3143 |
| NciI | CCSGG | 3 cut(s) | 26, 2030, 2431 |
| NcoI | CCATGG | 1 cut(s) | 2000 |
| NlaIV | GGNNCC | 2 cut(s) | 3102, 3425 |
| NmuCI | GTSAC | 2 cut(s) | 2333, 3310 |
| NsbI | TGCGCA | 1 cut(s) | 71 |
| NsiI | ATGCAT | 2 cut(s) | 1276, 1662 |
| NspI | RCATGY | 3 cut(s) | 1521, 1816, 2289 |
| PaeR7I | CTCGAG | 2 cut(s) | 214, 2552 |
| PagI | TCATGA | 1 cut(s) | 2733 |
| PasI | CCCWGGG | 1 cut(s) | 1294 |
| PciI | ACATGT | 2 cut(s) | 1812, 2285 |
| PciSI | GCTCTTC | 2 cut(s) | 987, 2523 |
| PctI | GAATGC | 1 cut(s) | 2990 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2230 |
| PfoI | TCCNGGA | 2 cut(s) | 24, 3034 |
| PkrI | GCNGC | 3 cut(s) | 7, 975, 2428 |
| PleI | GAGTC | 8 cut(s) | 37, 238, 491, 566, 1195, 1588, 2493, 2930 |
| PmaCI | CACGTG | 1 cut(s) | 1558 |
| PmlI | CACGTG | 1 cut(s) | 1558 |
| PpsI | GAGTC | 8 cut(s) | 37, 238, 491, 566, 1195, 1588, 2493, 2930 |
| Ppu21I | YACGTR | 1 cut(s) | 1558 |
| PscI | ACATGT | 2 cut(s) | 1812, 2285 |
| Psp124BI | GAGCTC | 2 cut(s) | 255, 2312 |
| Psp1406I | AACGTT | 2 cut(s) | 884, 2855 |
| Psp6I | CCWGG | 4 cut(s) | 853, 1293, 3034, 3271 |
| PspCI | CACGTG | 1 cut(s) | 1558 |
| PspGI | CCWGG | 4 cut(s) | 853, 1293, 3034, 3271 |
| PspN4I | GGNNCC | 2 cut(s) | 3102, 3425 |
| PspPI | GGNCC | 1 cut(s) | 2115 |
| PstI | CTGCAG | 1 cut(s) | 978 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2337 |
| PsuI | RGATCY | 7 cut(s) | 157, 561, 1609, 2434, 2628, 2870, 3172 |
| PvuII | CAGCTG | 1 cut(s) | 113 |
| RsaI | GTAC | 8 cut(s) | 513, 668, 1551, 1974, 2473, 2532, 2789, 3437 |
| RsaNI | GTAC | 8 cut(s) | 512, 667, 1550, 1973, 2472, 2531, 2788, 3436 |
| SacI | GAGCTC | 2 cut(s) | 255, 2312 |
| SapI | GCTCTTC | 2 cut(s) | 987, 2523 |
| SatI | GCNGC | 3 cut(s) | 6, 974, 2427 |
| Sau96I | GGNCC | 1 cut(s) | 2115 |
| ScaI | AGTACT | 1 cut(s) | 513 |
| SchI | GAGTC | 8 cut(s) | 38, 239, 491, 566, 1196, 1589, 2494, 2930 |
| ScrFI | CCNGG | 7 cut(s) | 26, 855, 1295, 2030, 2431, 3036, 3273 |
| SduI | GDGCHC | 2 cut(s) | 255, 2312 |
| SfaNI | GCATC | 7 cut(s) | 17, 840, 925, 1279, 1647, 2917, 3382 |
| SfcI | CTRYAG | 1 cut(s) | 974 |
| Sfr274I | CTCGAG | 2 cut(s) | 214, 2552 |
| SlaI | CTCGAG | 2 cut(s) | 214, 2552 |
| SmlI | CTYRAG | 9 cut(s) | 214, 359, 785, 1196, 1459, 2348, 2552, 2662, 2783 |
| SmoI | CTYRAG | 9 cut(s) | 214, 359, 785, 1196, 1459, 2348, 2552, 2662, 2783 |
| SpeI | ACTAGT | 1 cut(s) | 2276 |
| SsiI | CCGC | 4 cut(s) | 95, 421, 687, 2426 |
| SspI | AATATT | 2 cut(s) | 1636, 2674 |
| SspMI | CTAG | 3 cut(s) | 1352, 2277, 2816 |
| SstI | GAGCTC | 2 cut(s) | 255, 2312 |
| StyD4I | CCNGG | 7 cut(s) | 24, 853, 1293, 2028, 2429, 3034, 3271 |
| StyI | CCWWGG | 3 cut(s) | 1683, 2000, 3092 |
| TaqI | TCGA | 8 cut(s) | 132, 215, 822, 1119, 1648, 1876, 2553, 3060 |
| TatI | WGTACW | 3 cut(s) | 511, 2471, 3435 |
| TauI | GCSGC | 1 cut(s) | 2429 |
| TscAI | CASTG | 6 cut(s) | 169, 207, 619, 1991, 2338, 2841 |
| TseFI | GTSAC | 2 cut(s) | 2333, 3310 |
| TseI | GCWGC | 2 cut(s) | 5, 973 |
| Tsp45I | GTSAC | 2 cut(s) | 2333, 3310 |
| TspGWI | ACGGA | 7 cut(s) | 152, 360, 384, 783, 975, 2582, 3416 |
| TspRI | CASTG | 6 cut(s) | 169, 207, 619, 1991, 2338, 2841 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2230 |
| Vha464I | CTTAAG | 3 cut(s) | 359, 785, 2662 |
| XapI | RAATTY | 7 cut(s) | 448, 457, 1564, 1931, 1950, 2319, 2354 |
| XceI | RCATGY | 3 cut(s) | 1521, 1816, 2289 |
| XhoI | CTCGAG | 2 cut(s) | 214, 2552 |
| XmiI | GTMKAC | 3 cut(s) | 591, 1252, 1583 |
| XspI | CTAG | 3 cut(s) | 1352, 2277, 2816 |
| ZraI | GACGTC | 1 cut(s) | 1513 |
| ZrmI | AGTACT | 1 cut(s) | 513 |
| Zsp2I | ATGCAT | 2 cut(s) | 1276, 1662 |