AT4G38495

YL1 nuclear protein C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012323
Physical Location & Seq
Reverse (-)
18007357 .. 18008071
715 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38495.1

Sequence Viewer

Length: 375 bp
ATGGAGAGAGAGTTGATGGAGGCAGATATAGTGGTGGCGTCGCGATTGAGCTTTAAGAAGAAGCAAGCCTACGAAAAGTACCCAAAAGCACAATCAAGCAGCAGAAGGTGGAAACACCTCAAGCAGATTCTTCAAGCTGAGAACTTCCCAGATCTTCCTCCCGACCTCCCCACTTATGTTAACATTGAATCGCCTCCTTCCACTCAACCATGCAAGAGACTTTGCGATATTACTGGATATGAGGCACCTTATGTGGACCCAAGAACAAACCTCCGCTATGCTAATGCTCATGTTTTCCAGACTGTGAGATCACTTTCTTCCGACCAAGTCCACCAGTATCTCTCCATTCGCAATGCTGCTGTTGTTCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YL1_C

Protein Analysis

124

Amino Acids

14.32

Weight (kDa)

9.3

Isoelectric Point (pI)

60.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YL1_C PF08265 74 - 102 2.6e-14 YL1 nuclear protein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccII CGCG 1 cut(s) 43
AciI CCGC 1 cut(s) 274
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 2 cut(s) 134, 188
AluBI AGCT 2 cut(s) 51, 137
AluI AGCT 2 cut(s) 51, 137
Alw26I GTCTC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 99, 356
AspS9I GGNCC 1 cut(s) 256
AvaII GGWCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 244
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbvI GCAGC 2 cut(s) 111, 343
BccI CCATC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 211
BglII AGATCT 1 cut(s) 151
BisI GCNGC 2 cut(s) 100, 357
BlsI GCNGC 2 cut(s) 101, 358
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 246, 258
BpuEI CTTGAG 2 cut(s) 104, 353
BsaHI GRCGYC 1 cut(s) 38
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 238, 334
Bse3DI GCAATG 1 cut(s) 358
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 238, 334
BseXI GCAGC 2 cut(s) 111, 343
Bsh1236I CGCG 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 151, 308
Bsp68I TCGCGA 1 cut(s) 43
BspACI CCGC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 246, 258
BspT107I GGYRCC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 358
BsrI ACTGG 2 cut(s) 238, 334
BssMI GATC 2 cut(s) 151, 308
BssNI GRCGYC 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 304
BstACI GRCGYC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 43
BstKTI GATC 2 cut(s) 154, 311
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 151, 308
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 111, 343
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BtuMI TCGCGA 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 210, 290
CviJI RGCY 3 cut(s) 51, 68, 137
CviKI_1 RGCY 3 cut(s) 51, 68, 137
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 153, 310
DpnII GATC 2 cut(s) 151, 308
Eco47I GGWCC 1 cut(s) 256
FaeI CATG 2 cut(s) 213, 293
FaiI YATR 7 cut(s) 29, 177, 211, 240, 252, 279, 291
FatI CATG 2 cut(s) 209, 289
Fnu4HI GCNGC 2 cut(s) 100, 357
Fsp4HI GCNGC 2 cut(s) 100, 357
GluI GCNGC 2 cut(s) 100, 357
HgaI GACGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 2 cut(s) 213, 293
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 2 cut(s) 127, 188
HpaI GTTAAC 1 cut(s) 181
Hpy166II GTNNAC 3 cut(s) 181, 256, 331
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 3 cut(s) 42, 161, 298
Hpy8I GTNNAC 3 cut(s) 181, 256, 331
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 99, 207
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 213, 293
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 151, 308
LpnPI CCDG 4 cut(s) 162, 219, 311, 347
Lsp1109I GCAGC 2 cut(s) 111, 343
MalI GATC 2 cut(s) 153, 310
MboI GATC 2 cut(s) 151, 308
MboII GAAGA 4 cut(s) 70, 122, 146, 309
MflI RGATCY 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 7 cut(s) 13, 128, 168, 176, 204, 235, 281
MseI TTAA 2 cut(s) 54, 180
MvnI CGCG 1 cut(s) 43
NdeII GATC 2 cut(s) 151, 308
NlaIII CATG 2 cut(s) 213, 293
NlaIV GGNNCC 2 cut(s) 246, 258
NruI TCGCGA 1 cut(s) 43
PfeI GAWTC 2 cut(s) 127, 188
PflFI GACNNNGTC 1 cut(s) 326
PkrI GCNGC 2 cut(s) 101, 358
PspN4I GGNNCC 2 cut(s) 246, 258
PspPI GGNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 326
RruI TCGCGA 1 cut(s) 43
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 2 cut(s) 54, 180
SatI GCNGC 2 cut(s) 100, 357
Sau3AI GATC 2 cut(s) 151, 308
Sau96I GGNCC 1 cut(s) 256
SetI ASST 7 cut(s) 53, 110, 120, 139, 168, 250, 273
SinI GGWCC 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 119, 368
SmoI CTYRAG 2 cut(s) 119, 368
SsiI CCGC 1 cut(s) 274
TaaI ACNGT 1 cut(s) 304
TfiI GAWTC 2 cut(s) 127, 188
Tru1I TTAA 2 cut(s) 54, 180
Tru9I TTAA 2 cut(s) 54, 180
TseI GCWGC 2 cut(s) 99, 356
Tth111I GACNNNGTC 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.